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PMC:7558333 / 4541-5756 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 414-420 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T11 674-680 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T12 691-695 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T13 910-915 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T14 926-931 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 951-956 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T16 1084-1089 Body_part denotes Organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 414-420 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T8 674-680 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T9 910-915 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 926-931 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 951-956 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 1084-1089 Body_part denotes Organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 105-113 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 347-355 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 603-611 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T39 613-649 Disease denotes hypertension, cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0001302
T40 613-625 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T41 627-649 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T42 651-668 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T43 674-688 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T29 102-103 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 195-196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 674-680 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T32 674-680 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T33 674-680 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T34 899-900 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 910-915 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T36 910-915 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 944-949 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T38 951-956 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T39 1084-1089 http://purl.obolibrary.org/obo/UBERON_0003103 denotes Organ

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 613-625 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T3 627-649 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T4 674-688 Phenotype denotes kidney disease http://purl.obolibrary.org/obo/HP_0000112
T5 1069-1075 Phenotype denotes Sepsis http://purl.obolibrary.org/obo/HP_0100806

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 448-469 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T3 456-469 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T36 0-4 Sentence denotes 2.1.
T37 5-27 Sentence denotes Population of Patients
T38 28-241 Sentence denotes Forty-five intubated and mechanically ventilated patients hospitalized in a “COVID-19 ICU” of Rennes teaching hospital were screened for this study and benefited from a systematic monitoring to detect Aspergillus.
T39 242-330 Sentence denotes The hospital’s ethics committee (N 20-56 obtained the 30 April 2020) approved the study.
T40 331-513 Sentence denotes The presence of SARS-CoV-2 in respiratory specimens (nasal and pharyngeal swabs or sputum) was detected by real time reverse transcription-polymerase chain reaction (RT-PCR) methods.
T41 514-854 Sentence denotes The following data were recorded: age, patient’s preexisting condition (current smoking, diabetes, hypertension, cardiovascular disease, pulmonary disease, and kidney disease), body mass index, ICU length of stay, duration of mechanical ventilation, ventilator-free days at day 28, need for prone position ventilation, and death in the ICU.
T42 855-950 Sentence denotes Initial clinical laboratory workup included a complete blood count and serum biochemical tests.
T43 951-1012 Sentence denotes Chest CT scans were performed during the ICU hospitalization.
T44 1013-1215 Sentence denotes The Simplified Acute Physiology Score (SAPS II) and the Sepsis-Related Organ Failure Assessment (SOFA) score at admission in ICU, at day 7 and 14 days after admission were used to assess severity [7,8].

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
121 77-85 Species denotes patients Tax:9606
122 229-240 Species denotes Aspergillus Tax:746128
123 105-113 Disease denotes COVID-19 MESH:C000657245
125 347-357 Species denotes SARS-CoV-2 Tax:2697049
134 553-560 Species denotes patient Tax:9606
135 603-611 Disease denotes diabetes MESH:D003920
136 613-625 Disease denotes hypertension MESH:D006973
137 627-649 Disease denotes cardiovascular disease MESH:D002318
138 651-668 Disease denotes pulmonary disease MESH:D008171
139 674-688 Disease denotes kidney disease MESH:D007674
140 837-842 Disease denotes death MESH:D003643
141 1069-1097 Disease denotes Sepsis-Related Organ Failure MESH:D009102

2_test

Id Subject Object Predicate Lexical cue
32664423-8254858-60101695 1210-1211 8254858 denotes 7
32664423-31775846-60101696 1212-1213 31775846 denotes 8