> top > docs > PMC:7558333 > spans > 2626-4122 > annotations

PMC:7558333 / 2626-4122 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 284-293 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T5 1173-1181 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T6 1277-1282 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T7 1343-1346 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 1277-1282 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 7-15 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 40-75 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T22 46-75 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T23 77-81 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T24 152-154 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T25 418-431 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T26 432-440 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 527-529 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T28 695-703 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 725-738 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T30 740-744 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T31 973-981 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1061-1076 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T33 1067-1076 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T21 398-410 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T22 780-787 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T23 1277-1282 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T24 1277-1282 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 46-66 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1061-1076 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 761-774 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 776-778 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 1129-1142 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T5 1144-1146 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 1302-1304 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T24 0-294 Sentence denotes During COVID-19, patients presenting an acute respiratory distress syndrome (ARDS) shared risk factors and underlying diseases classically reported for IA, such as intubation and mechanical ventilation, corticosteroid therapy, immunological storm with high production of inflammatory cytokines.
T25 295-484 Sentence denotes Warnings following preliminary cohort studies from various countries prompted the monitoring of fungal colonization and co-infections in SARS-CoV-2-infected patients hospitalized in an ICU.
T26 485-642 Sentence denotes However, the entry criterion for putative IA, according to Blot et al., is an Aspergillus-positive culture endotracheal aspirate, which may lack specificity.
T27 643-885 Sentence denotes In the recent review by Arastehfar et al. [6], many COVID-19-associated pulmonary aspergillosis (CAPA) benefited from galactomannan (GM) testing of bronchoalveolar fluid (BALF) or even of tracheal aspirates (not approved by the manufacturer).
T28 886-1077 Sentence denotes However, some laboratories, such as ours, have stopped various manipulations of highly SARS-CoV-2-infected samples in order to limit the exposure of laboratory technicians to viral infection.
T29 1078-1254 Sentence denotes Then, direct examination of respiratory samples or galactomannan (GM) determination in broncho-alveolar lavage have thus been replaced by the systematic use of molecular tools.
T30 1255-1496 Sentence denotes While performances of blood biomarkers such as GM, (1-3)β-d-glucan (BDG) or Aspergillus DNA detection are well evaluated in neutropenic patients, their clinical value is far less known in other conditions and still need evaluation in an ICU.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 17-25 Species denotes patients Tax:9606
83 452-460 Species denotes patients Tax:9606
84 1391-1399 Species denotes patients Tax:9606
85 563-574 Species denotes Aspergillus Tax:746128
86 1331-1342 Species denotes Aspergillus Tax:746128
87 761-774 Chemical denotes galactomannan MESH:C012990
88 776-778 Chemical denotes GM MESH:C012990
89 1129-1142 Chemical denotes galactomannan MESH:C012990
90 1144-1146 Chemical denotes GM MESH:C012990
91 1302-1304 Chemical denotes GM MESH:C012990
92 1311-1321 Chemical denotes β-d-glucan
93 1323-1326 Chemical denotes BDG MESH:C480180
94 7-15 Disease denotes COVID-19 MESH:C000657245
95 40-75 Disease denotes acute respiratory distress syndrome MESH:D012128
96 77-81 Disease denotes ARDS MESH:D012128
97 415-428 Disease denotes co-infections MESH:D060085
98 432-451 Disease denotes SARS-CoV-2-infected MESH:C000657245
99 695-703 Disease denotes COVID-19 MESH:C000657245
100 715-738 Disease denotes pulmonary aspergillosis MESH:D055732
101 973-992 Disease denotes SARS-CoV-2-infected MESH:C000657245
102 1061-1076 Disease denotes viral infection MESH:D001102
103 1379-1390 Disease denotes neutropenic MESH:D009503