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PMC:7558333 / 24421-26543 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 91-103 Body_part denotes Colonization http://purl.org/sig/ont/fma/fma14543
T55 856-862 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T56 1003-1008 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T57 1161-1177 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T58 1173-1177 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 1258-1268 Body_part denotes Neutrophil http://purl.org/sig/ont/fma/fma62860
T60 1349-1359 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T61 1450-1460 Body_part denotes Hemoglobin http://purl.org/sig/ont/fma/fma62293
T62 1537-1545 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T63 1807-1814 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T37 856-862 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T38 1003-1008 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T39 1167-1172 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T136 55-68 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T137 131-153 Disease denotes Invasive Aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T138 140-153 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T139 527-535 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T140 582-594 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T141 647-653 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T142 731-753 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T143 795-832 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T144 815-832 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T145 848-870 Disease denotes Chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T146 856-870 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T170 47-49 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T171 91-103 http://purl.obolibrary.org/obo/UBERON_0001155 denotes Colonization
T172 190-192 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T173 214-216 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T174 331-333 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T175 365-367 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T176 766-773 http://purl.obolibrary.org/obo/CLO_0054060 denotes (10) 2
T177 856-862 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T178 856-862 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T179 856-862 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T180 1003-1008 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T181 1003-1008 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T182 1003-1008 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T183 1003-1008 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T184 1036-1038 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T185 1064-1067 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T186 1102-1104 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T187 1150-1153 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T188 1167-1172 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T189 1173-1177 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T190 1516-1518 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T191 1606-1609 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T192 1683-1687 http://purl.obolibrary.org/obo/CLO_0001442 denotes 6–12
T193 1690-1692 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T194 1745-1748 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T195 1751-1753 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T196 1864-1867 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T197 1926-1929 http://purl.obolibrary.org/obo/CLO_0054057 denotes 181
T198 1952-1954 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T199 2016-2018 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T200 2044-2046 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T201 2083-2085 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 582-594 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T12 647-653 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T13 731-753 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T14 795-832 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T15 848-870 Phenotype denotes Chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T191 0-170 Sentence denotes Demographic Characteristics All Patients (n = 45) No Aspergillosis (n = 30) Aspergillus Colonization (n = 8) Putative/Probable Invasive Aspergillosis (n = 7) p Value
T192 171-235 Sentence denotes Age, years 60 (53–71) 59 (54–68) 53 (51–71) 70 (63–75) 0.14
T193 236-325 Sentence denotes SexMen Women 32 (71.1)13 (28.9) 21 (70)9 (30) 7 (87.5)1 (12.5) 4 (57.1)3 (42.8) 0.42
T194 326-403 Sentence denotes BMI 27 (24.4–31.4) 27.5 (24.7–32.3) 27 (25.2–30.7) 25.2 (23.2–26.4) 0.99
T195 404-456 Sentence denotes Current smoking 3 (6.7) 2 (4.4) 0 1 (12.5) 0.54
T196 457-478 Sentence denotes Coexisting conditions
T197 479-526 Sentence denotes Any 31 (68.9) 19 (63) 6 (75) 6 (85.7) 0.47
T198 527-581 Sentence denotes Diabetes 17 (37.8) 12 (40) 3 (37.5) 2 (28.6) 0.74
T199 582-640 Sentence denotes Hypertension 15 (33.3) 7 (23.3) 5 (62.5) 3 (42.9) 0.1
T200 641-683 Sentence denotes Solid cancer 1 (2.2) 1 (3.3) 0 0 0.77
T201 684-730 Sentence denotes Hemopathy 2 (4.4) 1 (3.3) 0 1 (14.3) 0.54
T202 731-794 Sentence denotes Cardiovascular disease 3 (6.7) 3 (10) 2 (25) 2 (28.6) 0.34
T203 795-847 Sentence denotes Chronic obstructive pulmonary disease 0 0 0 0 -
T204 848-914 Sentence denotes Chronic kidney disease 4 (8.9) 2 (6.7) 1 (12.5) 1 (14.3) 0.83
T205 915-1002 Sentence denotes Temperature (°C) 38 (37–38.9) 37.5 (337–38.4) 38.2 (37.9–39) 38.2 (37.7–38.8) 0.29
T206 1003-1082 Sentence denotes Heart rate (/min) 100 (80–110) 94 (80–110) 104 (100–110) 102 (85–119) 0.63
T207 1083-1160 Sentence denotes Systolic pressure 94 (87–107) 93 (85–105) 103 (100–109) 90 (82–102) 0.34
T208 1161-1257 Sentence denotes White blood cell count (109/L) 9.8 (6.8–12.9) 9.7 (6.9–13) 9.9 (7–10.7) 9.9 (6.7–12.9) 0.97
T209 1258-1348 Sentence denotes Neutrophil count (109/L) 7.9 (4.5–10.8) 7 (4.9–10.5) 8.5 (5.2–8.6) 5.6 (3.5–10.4) 0.8
T210 1349-1449 Sentence denotes Lymphocyte count (109/L) 0.81 (0.58–1.11) 0.83 (0.53–1.14) 0.7 (0.63–1.1) 0.72 (0.58–0.81) 0.87
T211 1450-1536 Sentence denotes Hemoglobin (g/L) 10.8 (9.5–12.5) 10 (9.4–12) 11.8 (10.6–13.6) 11 (10.5–13.6) 0.12
T212 1537-1625 Sentence denotes Platelet count (109/L) 264 (194–357) 282 (220–364) 244 (184–347) 162 (129–262) 0.12
T213 1626-1716 Sentence denotes Total bilirubin concentration (µmol/L) 8 (5.5–12) 8.5 (6–12) 11 (9–13) 7 (5.5–8) 0.72
T214 1717-1795 Sentence denotes Creatinine (µmol/L) 81 (53–162) 71 (51–109) 81 (73–173) 101 (82–184) 0.15
T215 1796-1893 Sentence denotes C-reactive protein (CRP) (mg/L) 157 (112–263) 155 (112–265) 112 (102–131) 112 (109–178) 0.03
T216 1894-1979 Sentence denotes Ratio of PaO2 to FiO2 152 (100–181) 164 (107–214) 120 (94–214) 136 (72–155) 0.25
T217 1980-2056 Sentence denotes SAPS II score on day 1 42 (31–57) 35 (30–58) 42 (21–55) 43 (35–82) 0.55
T218 2057-2122 Sentence denotes SOFA score on day 1 7 (2–11) 7 (4–10) 5 (2–10) 9 (2–12) 0.76

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
598 1796-1814 Gene denotes C-reactive protein Gene:1401
599 1816-1819 Gene denotes CRP Gene:1401
600 33-41 Species denotes Patients Tax:9606
601 243-248 Species denotes Women Tax:9606
602 79-90 Species denotes Aspergillus Tax:746128
603 1717-1727 Chemical denotes Creatinine MESH:D003404
604 131-153 Disease denotes Invasive Aspergillosis MESH:D055744
605 527-535 Disease denotes Diabetes MESH:D003920
606 582-594 Disease denotes Hypertension MESH:D006973
607 647-653 Disease denotes cancer MESH:D009369
608 684-693 Disease denotes Hemopathy
609 731-753 Disease denotes Cardiovascular disease MESH:D002318
610 795-832 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
611 848-870 Disease denotes Chronic kidney disease MESH:D051436