PMC:7558333 / 22776-23719 JSONTXT

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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T51","span":{"begin":720,"end":728},"obj":"Body_part"}],"attributes":[{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma62871"}],"text":"Definition of putative IA \u003e1 criterion among: 1. Aspergillus-positive culture endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy"}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T126","span":{"begin":23,"end":25},"obj":"Disease"}],"attributes":[{"id":"A126","pred":"mondo_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"}],"text":"Definition of putative IA \u003e1 criterion among: 1. Aspergillus-positive culture endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy"}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T164","span":{"begin":729,"end":736},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"text":"Definition of putative IA \u003e1 criterion among: 1. Aspergillus-positive culture endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy"}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T161","span":{"begin":0,"end":46},"obj":"Sentence"},{"id":"T162","span":{"begin":47,"end":49},"obj":"Sentence"},{"id":"T163","span":{"begin":50,"end":103},"obj":"Sentence"},{"id":"T164","span":{"begin":104,"end":132},"obj":"Sentence"},{"id":"T165","span":{"begin":133,"end":190},"obj":"Sentence"},{"id":"T166","span":{"begin":191,"end":215},"obj":"Sentence"},{"id":"T167","span":{"begin":216,"end":324},"obj":"Sentence"},{"id":"T168","span":{"begin":325,"end":327},"obj":"Sentence"},{"id":"T169","span":{"begin":328,"end":385},"obj":"Sentence"},{"id":"T170","span":{"begin":386,"end":414},"obj":"Sentence"},{"id":"T171","span":{"begin":415,"end":472},"obj":"Sentence"},{"id":"T172","span":{"begin":473,"end":497},"obj":"Sentence"},{"id":"T173","span":{"begin":498,"end":610},"obj":"Sentence"},{"id":"T174","span":{"begin":611,"end":613},"obj":"Sentence"},{"id":"T175","span":{"begin":614,"end":739},"obj":"Sentence"},{"id":"T176","span":{"begin":740,"end":768},"obj":"Sentence"},{"id":"T177","span":{"begin":769,"end":826},"obj":"Sentence"},{"id":"T178","span":{"begin":827,"end":851},"obj":"Sentence"},{"id":"T179","span":{"begin":852,"end":943},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Definition of putative IA \u003e1 criterion among: 1. Aspergillus-positive culture endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy"}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"565","span":{"begin":50,"end":61},"obj":"Species"},{"id":"566","span":{"begin":233,"end":244},"obj":"Species"},{"id":"567","span":{"begin":328,"end":339},"obj":"Species"},{"id":"568","span":{"begin":515,"end":526},"obj":"Species"},{"id":"569","span":{"begin":614,"end":625},"obj":"Species"},{"id":"570","span":{"begin":708,"end":719},"obj":"Species"},{"id":"571","span":{"begin":869,"end":880},"obj":"Species"}],"attributes":[{"id":"A565","pred":"tao:has_database_id","subj":"565","obj":"Tax:746128"},{"id":"A566","pred":"tao:has_database_id","subj":"566","obj":"Tax:746128"},{"id":"A567","pred":"tao:has_database_id","subj":"567","obj":"Tax:746128"},{"id":"A568","pred":"tao:has_database_id","subj":"568","obj":"Tax:746128"},{"id":"A569","pred":"tao:has_database_id","subj":"569","obj":"Tax:746128"},{"id":"A570","pred":"tao:has_database_id","subj":"570","obj":"Tax:746128"},{"id":"A571","pred":"tao:has_database_id","subj":"571","obj":"Tax:746128"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Definition of putative IA \u003e1 criterion among: 1. Aspergillus-positive culture endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy \u003e1 criterion among: 1. Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2. Compatible clinical signs 3. Abnormal thoracic medical imaging on CT scan or X-ray 4a. Host risk factors Or 4b. Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy"}