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PMC:7558333 / 10771-12074 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T28 115-118 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T29 901-906 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T19 901-906 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T71 173-174 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 357-358 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T73 479-480 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T74 577-578 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 635-636 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 853-854 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 901-906 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T78 901-906 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T79 935-936 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 959-960 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 989-990 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 1016-1017 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 1064-1065 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 1266-1267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T12 1027-1029 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T85 0-4 Sentence denotes 3.3.
T86 5-36 Sentence denotes Concordance of Diagnostic Tools
T87 37-114 Sentence denotes Table 4 gathers the results of the techniques used for Aspergillus detection.
T88 115-257 Sentence denotes DNA detection by PCR showed the highest sensitivity, with a number of positive respiratory samples near twice higher, compared to the culture.
T89 258-492 Sentence denotes Only one sample grew in culture, whereas PCR was negative, but the species obtained in culture was A. tubingensis (Nigri complex species), which is theoretically not amplified when using the 28S-targeted PCR specific for A. fumigatus.
T90 493-752 Sentence denotes Interestingly, the correlation between cultural and molecular quantification showed a significant difference between the two techniques, with a mean Cq threshold of 32.6 ± 0.7 when cultures were negative, highlighting the higher sensitivity of PCR (Figure 1).
T91 753-890 Sentence denotes Overall, the concordance coefficient between PCR and culture on respiratory samples was 90.52% with a Cohen’s Kappa coefficient of 0.588.
T92 891-980 Sentence denotes Regarding blood samples, three patients had a positive detection of a systemic biomarker:
T93 981-1040 Sentence denotes 3/3 had a positive PCR and 2/3 had a positive GM (Table 5).
T94 1041-1165 Sentence denotes All three patients had a simultaneous detection of Aspergillus in respiratory samples by culture (n = 2) and/or PCR (n = 3).
T95 1166-1303 Sentence denotes Overall, the concordance coefficient between PCR and culture on respiratory samples was 93.75% with a Cohen’s Kappa coefficient of 0.632.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
233 357-371 Species denotes A. tubingensis Tax:5068
234 479-491 Species denotes A. fumigatus Tax:746128
235 92-103 Species denotes Aspergillus Tax:746128
240 922-930 Species denotes patients Tax:9606
241 1051-1059 Species denotes patients Tax:9606
242 1092-1103 Species denotes Aspergillus Tax:746128
243 1027-1029 Chemical denotes GM MESH:C012990