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PMC:7556165 / 63126-63571 JSONTXT

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LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T175 37-44 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T176 84-91 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T177 111-118 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T178 159-166 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T378 0-445 Sentence denotes One common PRR is NOD-like receptors protein 3 (NLRP3), which forms together with a protein caspase activating protein (ASC or apoptosis-associated speck-like protein containing a caspase recruitment domain) and pro-caspase 1, the inflammasome unit capable of recruiting proinflammatory cytokines and inducing cell lysis with further inflammation signals (Fernandes-Alnemri et al., 2007; Schroder and Tschopp, 2010; Wree et al., 2014; Figure 9).

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
1727 48-53 Gene denotes NLRP3 Gene:114548
1728 216-225 Gene denotes caspase 1 Gene:834
1731 334-346 Disease denotes inflammation MESH:D007249

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T5874 37-46 Protein denotes protein 3 https://www.uniprot.org/uniprot/Q9JGT9|https://www.uniprot.org/uniprot/Q98663|https://www.uniprot.org/uniprot/Q8V3T9|https://www.uniprot.org/uniprot/Q6UBL8|https://www.uniprot.org/uniprot/Q6Q1S1|https://www.uniprot.org/uniprot/Q6E0W9|https://www.uniprot.org/uniprot/Q68Y30|https://www.uniprot.org/uniprot/Q5GA88|https://www.uniprot.org/uniprot/Q3LZX0|https://www.uniprot.org/uniprot/Q3I5J4|https://www.uniprot.org/uniprot/Q12988|https://www.uniprot.org/uniprot/Q0Q474|https://www.uniprot.org/uniprot/Q02967|https://www.uniprot.org/uniprot/Q00967|https://www.uniprot.org/uniprot/P09522|https://www.uniprot.org/uniprot/P05398|https://www.uniprot.org/uniprot/P03553|https://www.uniprot.org/uniprot/P03552|https://www.uniprot.org/uniprot/P03551
T5893 82-91 Protein denotes a protein https://www.uniprot.org/uniprot/Q38365|https://www.uniprot.org/uniprot/P25244|https://www.uniprot.org/uniprot/P25243|https://www.uniprot.org/uniprot/P15966|https://www.uniprot.org/uniprot/P09676|https://www.uniprot.org/uniprot/P07394|https://www.uniprot.org/uniprot/P03632|https://www.uniprot.org/uniprot/P03610|https://www.uniprot.org/uniprot/O64306
T5902 92-99 Protein denotes caspase https://www.uniprot.org/uniprot/Q9VAH1|https://www.uniprot.org/uniprot/O01382
T5904 120-123 Protein denotes ASC https://www.uniprot.org/uniprot/P50427|https://www.uniprot.org/uniprot/P15589|https://www.uniprot.org/uniprot/P08842|https://www.uniprot.org/uniprot/B2RA47
T5908 180-187 Protein denotes caspase https://www.uniprot.org/uniprot/Q9VAH1|https://www.uniprot.org/uniprot/O01382
T5910 216-225 Protein denotes caspase 1 https://www.uniprot.org/uniprot/Q9W1N0|https://www.uniprot.org/uniprot/Q9UCN3|https://www.uniprot.org/uniprot/Q9TV13|https://www.uniprot.org/uniprot/Q9N2I1|https://www.uniprot.org/uniprot/Q9MZV7|https://www.uniprot.org/uniprot/Q9MZV6|https://www.uniprot.org/uniprot/Q6PI75|https://www.uniprot.org/uniprot/Q6GSS3|https://www.uniprot.org/uniprot/Q6DMQ1|https://www.uniprot.org/uniprot/Q53EY6|https://www.uniprot.org/uniprot/P89116|https://www.uniprot.org/uniprot/P43527|https://www.uniprot.org/uniprot/P29466|https://www.uniprot.org/uniprot/P29452|https://www.uniprot.org/uniprot/O02002|https://www.uniprot.org/uniprot/B5MDZ1

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T254 310-314 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T423 37-44 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T424 84-91 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T425 111-118 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T426 159-166 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T427 287-296 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T428 310-314 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T368 18-21 Disease denotes NOD http://purl.obolibrary.org/obo/MONDO_0007435
T369 120-123 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T370 334-346 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T126 92-110 http://purl.obolibrary.org/obo/GO_0006919 denotes caspase activating
T127 127-136 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T128 127-136 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T129 315-320 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis
T130 334-346 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T127 92-110 http://purl.obolibrary.org/obo/GO_0006919 denotes caspase activating
T128 127-136 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T129 127-136 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T130 315-320 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis
T131 334-346 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1727 48-53 Gene denotes NLRP3 Gene:114548
1728 216-225 Gene denotes caspase 1 Gene:834
1731 334-346 Disease denotes inflammation MESH:D007249

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T378 0-445 Sentence denotes One common PRR is NOD-like receptors protein 3 (NLRP3), which forms together with a protein caspase activating protein (ASC or apoptosis-associated speck-like protein containing a caspase recruitment domain) and pro-caspase 1, the inflammasome unit capable of recruiting proinflammatory cytokines and inducing cell lysis with further inflammation signals (Fernandes-Alnemri et al., 2007; Schroder and Tschopp, 2010; Wree et al., 2014; Figure 9).