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PMC:7556165 / 45859-46256 JSONTXT

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LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T81 0-5 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes X-ray http://purl.bioontology.org/ontology/MEDDRA/10048064

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T156 344-353 Chemical denotes disulfide http://purl.obolibrary.org/obo/CHEBI_48343

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T221 34-44 Species denotes SARS-CoV-2 NCBItxid:2697049
T222 34-38 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T283 0-397 Sentence denotes X-ray crystallography showed that SARS-CoV-2 RBD folds into two structural domains (Figure 8): (1) the core subdomain with five antiparallel β-strands (β1, β2, β3, β4, β7), (2) the external subdomain, which inserts between β4 and β7, and it is characterized by the two small β5 and β6 strands [β1’ and β2’ in Wang et al. (2020)] connected by a disulfide bond (Lan et al., 2020; Wang et al., 2020).

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
1248 152-154 Gene denotes β1 Gene:597
1249 156-158 Gene denotes β2 Gene:170589
1250 160-162 Gene denotes β3 Gene:28883
1251 164-166 Gene denotes β4 Gene:28898
1252 168-170 Gene denotes β7 Gene:28885
1253 223-225 Gene denotes β4 Gene:28898
1254 302-305 Gene denotes β2’ Gene:170589
1255 294-297 Gene denotes β1’ Gene:597
1256 282-284 Gene denotes β6 Gene:28873
1257 275-277 Gene denotes β5 Gene:28884
1258 230-232 Gene denotes β7 Gene:28885
1260 34-44 Species denotes SARS-CoV-2 Tax:2697049
1263 344-353 Chemical denotes disulfide MESH:D004220

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T5055 45-48 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T201 34-44 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T202 34-38 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1248 152-154 Gene denotes β1 Gene:597
1249 156-158 Gene denotes β2 Gene:170589
1250 160-162 Gene denotes β3 Gene:28883
1251 164-166 Gene denotes β4 Gene:28898
1252 168-170 Gene denotes β7 Gene:28885
1253 223-225 Gene denotes β4 Gene:28898
1254 302-305 Gene denotes β2’ Gene:170589
1255 294-297 Gene denotes β1’ Gene:597
1256 282-284 Gene denotes β6 Gene:28873
1257 275-277 Gene denotes β5 Gene:28884
1258 230-232 Gene denotes β7 Gene:28885
1260 34-44 Species denotes SARS-CoV-2 Tax:2697049
1263 344-353 Chemical denotes disulfide MESH:D004220

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T283 0-397 Sentence denotes X-ray crystallography showed that SARS-CoV-2 RBD folds into two structural domains (Figure 8): (1) the core subdomain with five antiparallel β-strands (β1, β2, β3, β4, β7), (2) the external subdomain, which inserts between β4 and β7, and it is characterized by the two small β5 and β6 strands [β1’ and β2’ in Wang et al. (2020)] connected by a disulfide bond (Lan et al., 2020; Wang et al., 2020).