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PMC:7556165 / 34340-34996 JSONTXT

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LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T107 126-131 Species denotes human NCBItxid:9606
T108 318-328 Species denotes SARS-CoV-2 NCBItxid:2697049
T109 318-322 Species denotes SARS NCBItxid:694009
T110 362-370 Species denotes SARS-CoV NCBItxid:694009
T111 362-366 Species denotes SARS NCBItxid:694009
T112 418-426 Species denotes COVID-19 NCBItxid:2697049
T113 428-452 Species denotes COronaVIrus Disease 2019 NCBItxid:2697049
T114 503-513 Species denotes SARS-CoV-2 NCBItxid:2697049
T115 503-507 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T211 79-275 Sentence denotes In late 2019, another coronavirus emerged as a human pathogen in the city of Wuhan in China, producing symptoms such as fever, severe respiratory impairment, and pneumonia (Petersen et al., 2020).
T212 276-454 Sentence denotes This new coronavirus has been denominated SARS-CoV-2 for its genetic resemblance with SARS-CoV (∼80%), and its related disease has been named COVID-19 (COronaVIrus Disease 2019).
T213 455-615 Sentence denotes Owing to its high reproduction number R0 (2–3), SARS-CoV-2 has rapidly diffused in several countries and is currently posing a significant global health threat.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
979 101-112 Species denotes coronavirus Tax:11118
980 126-131 Species denotes human Tax:9606
981 281-296 Species denotes new coronavirus Tax:2697049
982 318-328 Species denotes SARS-CoV-2 Tax:2697049
983 362-370 Species denotes SARS-CoV Tax:694009
984 503-513 Species denotes SARS-CoV-2 Tax:2697049
987 36-46 Disease denotes infections MESH:D007239
988 199-204 Disease denotes fever MESH:D005334
989 213-235 Disease denotes respiratory impairment MESH:D012131
990 241-250 Disease denotes pneumonia MESH:D011014
991 428-452 Disease denotes COronaVIrus Disease 2019 MESH:C000657245

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T111 36-46 http://purl.obolibrary.org/obo/IDO_0000586 denotes infections
T112 132-140 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogen
T113 182-190 http://purl.obolibrary.org/obo/OGMS_0000020 denotes symptoms
T114 395-402 http://purl.obolibrary.org/obo/OGMS_0000031 denotes disease
T115 440-447 http://purl.obolibrary.org/obo/OGMS_0000031 denotes Disease
T116 473-485 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T106 36-46 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T107 241-250 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T108 318-328 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T109 318-322 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T110 362-370 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T111 362-366 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 418-426 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 428-452 Disease denotes COronaVIrus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T114 503-513 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T115 503-507 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T88 473-485 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T39 199-204 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T40 213-235 Phenotype denotes respiratory impairment http://purl.obolibrary.org/obo/HP_0002093
T41 241-250 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T91 473-485 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T42 199-204 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T43 213-235 Phenotype denotes respiratory impairment http://purl.obolibrary.org/obo/HP_0002093
T44 241-250 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
979 101-112 Species denotes coronavirus Tax:11118
980 126-131 Species denotes human Tax:9606
981 281-296 Species denotes new coronavirus Tax:2697049
982 318-328 Species denotes SARS-CoV-2 Tax:2697049
983 362-370 Species denotes SARS-CoV Tax:694009
984 503-513 Species denotes SARS-CoV-2 Tax:2697049
987 36-46 Disease denotes infections MESH:D007239
988 199-204 Disease denotes fever MESH:D005334
989 213-235 Disease denotes respiratory impairment MESH:D012131
990 241-250 Disease denotes pneumonia MESH:D011014
991 428-452 Disease denotes COronaVIrus Disease 2019 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T211 79-275 Sentence denotes In late 2019, another coronavirus emerged as a human pathogen in the city of Wuhan in China, producing symptoms such as fever, severe respiratory impairment, and pneumonia (Petersen et al., 2020).
T212 276-454 Sentence denotes This new coronavirus has been denominated SARS-CoV-2 for its genetic resemblance with SARS-CoV (∼80%), and its related disease has been named COVID-19 (COronaVIrus Disease 2019).
T213 455-615 Sentence denotes Owing to its high reproduction number R0 (2–3), SARS-CoV-2 has rapidly diffused in several countries and is currently posing a significant global health threat.