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PMC:7556165 / 11239-13124 JSONTXT

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LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T51 225-234 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes estradiol http://purl.bioontology.org/ontology/MEDDRA/10030227
T52 920-923 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes ACE http://purl.bioontology.org/ontology/MEDDRA/10050289
T53 963-968 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes renin http://purl.bioontology.org/ontology/MEDDRA/10038555
T54 1193-1196 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes ACE http://purl.bioontology.org/ontology/MEDDRA/10050289

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T59 225-234 Chemical denotes estradiol http://purl.obolibrary.org/obo/CHEBI_23965
T60 262-269 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T61 529-533 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T62 924-931 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T63 969-980 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T36 112-117 Species denotes human NCBItxid:9606
T37 634-642 Species denotes COVID-19 NCBItxid:2697049
T38 677-687 Species denotes SARS-CoV-2 NCBItxid:2697049
T39 677-681 Species denotes SARS NCBItxid:694009
T40 730-738 Species denotes COVID-19 NCBItxid:2697049
T41 852-857 Species denotes human NCBItxid:9606

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T77 0-152 Sentence denotes A growing number of recent findings point to an important role of epigenetic mechanisms associated with several human diseases (Surguchov et al., 2017).
T78 153-327 Sentence denotes In this context, several authors highlighted the regulatory role of 17β-estradiol (E2), a primary female sex steroid, in the expression of ACE2 in a tissue-dependent fashion.
T79 328-476 Sentence denotes Liu et al. (2010) and Stelzig et al. (2020) found out that E2 downregulates ACE2 in kidney and differentiated airway epithelial cells, respectively.
T80 477-759 Sentence denotes The latter result is particularly important, as the male-bias of ACE2 expression in the lung could account for the alleged higher susceptibility of males to COVID-19 symptoms following ACE2-dependent SARS-CoV-2 infection (section Links Between ACE2 and COVID-19) (Jin et al., 2020).
T81 760-932 Sentence denotes Yet, Bukowska et al. (2017) observed that E2 increases ACE2 transcription and expression in human atrial tissue, while at the same time depressing the level of ACE protein.
T82 933-1144 Sentence denotes This mechanism attenuates the renin-angiotensin system and, in tandem with anti-inflammatory and anti-oxidative effects, enables a stronger response to myocardial stress and contributes to antiarhythmic effects.
T83 1145-1291 Sentence denotes The upregulation of ACE2 (and downregulation of ACE) was clearly linked to binding of E2 to Estrogen Receptor alpha (ERα) (Bukowska et al., 2017).
T84 1292-1532 Sentence denotes The E2-ERα complex might migrate to the nucleus to bind to estrogen response elements, although the actual mechanism is still obscure and should likely involve other co-factors to take into account the observed tissue bias of E2 regulation.
T85 1533-1782 Sentence denotes Nonetheless, it was demonstrated that the Estrogen Related Receptor alpha (ERRα), which likewise ERα recognizes the estrogen response element in target genes, binds to ACE2 promoter to repress transcription (Tremblay et al., 2010; Lee et al., 2012).
T86 1783-1885 Sentence denotes Hopefully, future studies will shed more light on the intriguing role of estrogens in ACE2 regulation.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 302-308 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T16 412-418 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T17 565-569 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 865-871 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T19 963-987 Body_part denotes renin-angiotensin system http://purl.obolibrary.org/obo/UBERON_0018229
T20 1503-1509 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
369 292-296 Gene denotes ACE2 Gene:59272
370 404-408 Gene denotes ACE2 Gene:59272
371 542-546 Gene denotes ACE2 Gene:59272
372 662-666 Gene denotes ACE2 Gene:59272
373 721-725 Gene denotes ACE2 Gene:59272
374 815-819 Gene denotes ACE2 Gene:59272
375 920-923 Gene denotes ACE Gene:1636
376 963-968 Gene denotes renin Gene:5972
377 1165-1169 Gene denotes ACE2 Gene:59272
378 1193-1196 Gene denotes ACE Gene:1636
379 1262-1289 Gene denotes ERα) (Bukowska et al., 2017 Gene:2099
380 1575-1606 Gene denotes Estrogen Related Receptor alpha Gene:2101
381 1608-1612 Gene denotes ERRα Gene:2101
382 1630-1633 Gene denotes ERα Gene:2099
383 1701-1705 Gene denotes ACE2 Gene:59272
384 1869-1873 Gene denotes ACE2 Gene:59272
385 112-117 Species denotes human Tax:9606
386 852-857 Species denotes human Tax:9606
387 1299-1302 Gene denotes ERα Gene:2099
388 221-234 Chemical denotes 17β-estradiol MESH:D004958
389 236-238 Chemical denotes E2 MESH:D004958
390 262-269 Chemical denotes steroid MESH:D013256
391 387-389 Chemical denotes E2 MESH:D004958
392 802-804 Chemical denotes E2 MESH:D004958
393 1231-1233 Chemical denotes E2 MESH:D004958
394 634-642 Disease denotes COVID-19 MESH:C000657245
395 677-697 Disease denotes SARS-CoV-2 infection MESH:C000657245
396 730-738 Disease denotes COVID-19 MESH:C000657245
397 1085-1102 Disease denotes myocardial stress MESH:D000079225
940 721-725 Gene denotes ACE2 Gene:59272
941 730-738 Disease denotes COVID-19 MESH:C000657245

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1555 292-296 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1556 404-408 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1557 542-546 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1558 662-666 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1559 721-725 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1560 815-819 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1561 920-923 Protein denotes ACE https://www.uniprot.org/uniprot/Q9GLN7|https://www.uniprot.org/uniprot/Q9GLN6|https://www.uniprot.org/uniprot/Q9EQM9|https://www.uniprot.org/uniprot/Q8CFN1|https://www.uniprot.org/uniprot/Q7TMC6|https://www.uniprot.org/uniprot/Q7M4L4|https://www.uniprot.org/uniprot/Q6GTS2|https://www.uniprot.org/uniprot/Q59GY8|https://www.uniprot.org/uniprot/Q53YX9|https://www.uniprot.org/uniprot/Q50JE5|https://www.uniprot.org/uniprot/Q10751|https://www.uniprot.org/uniprot/Q0GA41|https://www.uniprot.org/uniprot/P47820|https://www.uniprot.org/uniprot/P22968|https://www.uniprot.org/uniprot/P22967|https://www.uniprot.org/uniprot/P22966|https://www.uniprot.org/uniprot/P12822|https://www.uniprot.org/uniprot/P12821|https://www.uniprot.org/uniprot/P12820|https://www.uniprot.org/uniprot/P09470|https://www.uniprot.org/uniprot/O02852|https://www.uniprot.org/uniprot/E7EU16|https://www.uniprot.org/uniprot/B4DXI3|https://www.uniprot.org/uniprot/B0LPF0|https://www.uniprot.org/uniprot/Q9VJV3
T1586 963-968 Protein denotes renin https://www.uniprot.org/uniprot/Q9TSZ1|https://www.uniprot.org/uniprot/Q6T5C2|https://www.uniprot.org/uniprot/Q6FI38|https://www.uniprot.org/uniprot/Q6DYE7|https://www.uniprot.org/uniprot/Q6DLW5|https://www.uniprot.org/uniprot/Q6DLS0|https://www.uniprot.org/uniprot/Q63497|https://www.uniprot.org/uniprot/P60016|https://www.uniprot.org/uniprot/P52115|https://www.uniprot.org/uniprot/P08424|https://www.uniprot.org/uniprot/P00797
T1597 969-980 Protein denotes angiotensin https://www.uniprot.org/uniprot/Q10757
T1598 1165-1169 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1599 1193-1196 Protein denotes ACE https://www.uniprot.org/uniprot/Q9GLN7|https://www.uniprot.org/uniprot/Q9GLN6|https://www.uniprot.org/uniprot/Q9EQM9|https://www.uniprot.org/uniprot/Q8CFN1|https://www.uniprot.org/uniprot/Q7TMC6|https://www.uniprot.org/uniprot/Q7M4L4|https://www.uniprot.org/uniprot/Q6GTS2|https://www.uniprot.org/uniprot/Q59GY8|https://www.uniprot.org/uniprot/Q53YX9|https://www.uniprot.org/uniprot/Q50JE5|https://www.uniprot.org/uniprot/Q10751|https://www.uniprot.org/uniprot/Q0GA41|https://www.uniprot.org/uniprot/P47820|https://www.uniprot.org/uniprot/P22968|https://www.uniprot.org/uniprot/P22967|https://www.uniprot.org/uniprot/P22966|https://www.uniprot.org/uniprot/P12822|https://www.uniprot.org/uniprot/P12821|https://www.uniprot.org/uniprot/P12820|https://www.uniprot.org/uniprot/P09470|https://www.uniprot.org/uniprot/O02852|https://www.uniprot.org/uniprot/E7EU16|https://www.uniprot.org/uniprot/B4DXI3|https://www.uniprot.org/uniprot/B0LPF0|https://www.uniprot.org/uniprot/Q9VJV3
T1624 1237-1254 Protein denotes Estrogen Receptor https://www.uniprot.org/uniprot/Q9YHZ7|https://www.uniprot.org/uniprot/Q9YHT3|https://www.uniprot.org/uniprot/Q9YH33|https://www.uniprot.org/uniprot/Q9YGE6|https://www.uniprot.org/uniprot/Q9UIS7|https://www.uniprot.org/uniprot/Q9UDZ7|https://www.uniprot.org/uniprot/Q9TV98|https://www.uniprot.org/uniprot/Q9QZJ5|https://www.uniprot.org/uniprot/Q9QZG6|https://www.uniprot.org/uniprot/Q9QY52|https://www.uniprot.org/uniprot/Q9QY51|https://www.uniprot.org/uniprot/Q9PWP6|https://www.uniprot.org/uniprot/Q9PVZ9|https://www.uniprot.org/uniprot/Q9PSZ9|https://www.uniprot.org/uniprot/Q9PSZ8|https://www.uniprot.org/uniprot/Q9NU51|https://www.uniprot.org/uniprot/Q9JJT5|https://www.uniprot.org/uniprot/Q98SM9|https://www.uniprot.org/uniprot/Q95131|https://www.uniprot.org/uniprot/Q91424|https://www.uniprot.org/uniprot/Q91250|https://www.uniprot.org/uniprot/Q6QIS5|https://www.uniprot.org/uniprot/Q6MZQ9|https://www.uniprot.org/uniprot/Q5T5H7|https://www.uniprot.org/uniprot/Q53AD2|https://www.uniprot.org/uniprot/Q29040|https://www.uniprot.org/uniprot/Q14276|https://www.uniprot.org/uniprot/Q13511|https://www.uniprot.org/uniprot/P81559|https://www.uniprot.org/uniprot/P57753|https://www.uniprot.org/uniprot/P57717|https://www.uniprot.org/uniprot/P50242|https://www.uniprot.org/uniprot/P50241|https://www.uniprot.org/uniprot/P50240|https://www.uniprot.org/uniprot/P49886|https://www.uniprot.org/uniprot/P49885|https://www.uniprot.org/uniprot/P49884|https://www.uniprot.org/uniprot/P19785|https://www.uniprot.org/uniprot/P16058|https://www.uniprot.org/uniprot/P06212|https://www.uniprot.org/uniprot/P06211|https://www.uniprot.org/uniprot/P03372|https://www.uniprot.org/uniprot/O42174|https://www.uniprot.org/uniprot/O42132
T1668 1255-1260 Protein denotes alpha https://www.uniprot.org/uniprot/Q66765|https://www.uniprot.org/uniprot/Q66764|https://www.uniprot.org/uniprot/Q2V6G9|https://www.uniprot.org/uniprot/Q155Z9|https://www.uniprot.org/uniprot/P32540|https://www.uniprot.org/uniprot/P17594|https://www.uniprot.org/uniprot/P17593|https://www.uniprot.org/uniprot/P12296|https://www.uniprot.org/uniprot/P03304|https://www.uniprot.org/uniprot/C0MHL9|https://www.uniprot.org/uniprot/B8XTP8
T1679 1575-1606 Protein denotes Estrogen Related Receptor alpha https://www.uniprot.org/uniprot/Q6QMY5|https://www.uniprot.org/uniprot/Q5QJV7|https://www.uniprot.org/uniprot/Q3U110|https://www.uniprot.org/uniprot/Q3MHT1|https://www.uniprot.org/uniprot/Q14514|https://www.uniprot.org/uniprot/P11474|https://www.uniprot.org/uniprot/O08580|https://www.uniprot.org/uniprot/B2RRU9
T1687 1608-1611 Protein denotes ERR https://www.uniprot.org/uniprot/Q09143|https://www.uniprot.org/uniprot/P30824
T1689 1701-1705 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1690 1869-1873 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T28 118-126 http://purl.obolibrary.org/obo/OGMS_0000031 denotes diseases
T29 456-461 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T30 607-621 http://purl.obolibrary.org/obo/IDO_0000467 denotes susceptibility
T31 643-651 http://purl.obolibrary.org/obo/OGMS_0000020 denotes symptoms
T32 688-697 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T48 302-308 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T49 412-418 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T50 445-461 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T51 456-461 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T52 565-569 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T53 865-871 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T54 924-931 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T55 1237-1245 Body_part denotes Estrogen http://purl.org/sig/ont/fma/fma83376
T56 1351-1359 Body_part denotes estrogen http://purl.org/sig/ont/fma/fma83376
T57 1503-1509 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T58 1575-1583 Body_part denotes Estrogen http://purl.org/sig/ont/fma/fma83376
T59 1649-1657 Body_part denotes estrogen http://purl.org/sig/ont/fma/fma83376
T60 1856-1865 Body_part denotes estrogens http://purl.org/sig/ont/fma/fma83376

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T43 634-642 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 677-687 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T45 677-681 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 688-697 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 730-738 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T17 412-418 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney
T18 529-533 http://purl.obolibrary.org/obo/MAT_0000029 denotes male
T19 565-569 http://purl.obolibrary.org/obo/MAT_0000135 denotes lung
T20 625-630 http://purl.obolibrary.org/obo/MAT_0000029 denotes males

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T18 820-833 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T19 1521-1531 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T20 1726-1739 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T21 1874-1884 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T18 820-833 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T19 1521-1531 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T20 1726-1739 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T21 1874-1884 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
369 292-296 Gene denotes ACE2 Gene:59272
370 404-408 Gene denotes ACE2 Gene:59272
371 542-546 Gene denotes ACE2 Gene:59272
372 662-666 Gene denotes ACE2 Gene:59272
373 721-725 Gene denotes ACE2 Gene:59272
374 815-819 Gene denotes ACE2 Gene:59272
375 920-923 Gene denotes ACE Gene:1636
376 963-968 Gene denotes renin Gene:5972
377 1165-1169 Gene denotes ACE2 Gene:59272
378 1193-1196 Gene denotes ACE Gene:1636
379 1262-1265 Gene denotes ERα Gene:2099
380 1575-1606 Gene denotes Estrogen Related Receptor alpha Gene:2101
381 1608-1612 Gene denotes ERRα Gene:2101
382 1630-1633 Gene denotes ERα Gene:2099
383 1701-1705 Gene denotes ACE2 Gene:59272
384 1869-1873 Gene denotes ACE2 Gene:59272
385 112-117 Species denotes human Tax:9606
386 852-857 Species denotes human Tax:9606
387 1299-1302 Gene denotes ERα Gene:2099
388 221-234 Chemical denotes 17β-estradiol MESH:D004958
389 236-238 Chemical denotes E2 MESH:D004958
390 262-269 Chemical denotes steroid MESH:D013256
391 387-389 Chemical denotes E2 MESH:D004958
392 802-804 Chemical denotes E2 MESH:D004958
393 1231-1233 Chemical denotes E2 MESH:D004958
394 634-642 Disease denotes COVID-19 MESH:C000657245
395 677-697 Disease denotes SARS-CoV-2 infection MESH:C000657245
396 730-738 Disease denotes COVID-19 MESH:C000657245
397 1085-1102 Disease denotes myocardial stress MESH:D000079225

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T77 0-152 Sentence denotes A growing number of recent findings point to an important role of epigenetic mechanisms associated with several human diseases (Surguchov et al., 2017).
T78 153-327 Sentence denotes In this context, several authors highlighted the regulatory role of 17β-estradiol (E2), a primary female sex steroid, in the expression of ACE2 in a tissue-dependent fashion.
T79 328-476 Sentence denotes Liu et al. (2010) and Stelzig et al. (2020) found out that E2 downregulates ACE2 in kidney and differentiated airway epithelial cells, respectively.
T80 477-759 Sentence denotes The latter result is particularly important, as the male-bias of ACE2 expression in the lung could account for the alleged higher susceptibility of males to COVID-19 symptoms following ACE2-dependent SARS-CoV-2 infection (section Links Between ACE2 and COVID-19) (Jin et al., 2020).
T81 760-932 Sentence denotes Yet, Bukowska et al. (2017) observed that E2 increases ACE2 transcription and expression in human atrial tissue, while at the same time depressing the level of ACE protein.
T82 933-1144 Sentence denotes This mechanism attenuates the renin-angiotensin system and, in tandem with anti-inflammatory and anti-oxidative effects, enables a stronger response to myocardial stress and contributes to antiarhythmic effects.
T83 1145-1291 Sentence denotes The upregulation of ACE2 (and downregulation of ACE) was clearly linked to binding of E2 to Estrogen Receptor alpha (ERα) (Bukowska et al., 2017).
T84 1292-1532 Sentence denotes The E2-ERα complex might migrate to the nucleus to bind to estrogen response elements, although the actual mechanism is still obscure and should likely involve other co-factors to take into account the observed tissue bias of E2 regulation.
T85 1533-1782 Sentence denotes Nonetheless, it was demonstrated that the Estrogen Related Receptor alpha (ERRα), which likewise ERα recognizes the estrogen response element in target genes, binds to ACE2 promoter to repress transcription (Tremblay et al., 2010; Lee et al., 2012).
T86 1783-1885 Sentence denotes Hopefully, future studies will shed more light on the intriguing role of estrogens in ACE2 regulation.