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PMC:7555630 / 3948-6148 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 137-155 Disease denotes Movement Disorders http://purl.obolibrary.org/obo/MONDO_0005395
T43 277-294 Disease denotes Parkinson disease http://purl.obolibrary.org/obo/MONDO_0005180
T44 305-323 Disease denotes movement disorders http://purl.obolibrary.org/obo/MONDO_0005395
T45 417-419 Disease denotes PD http://purl.obolibrary.org/obo/MONDO_0005180
T46 476-494 Disease denotes movement disorders http://purl.obolibrary.org/obo/MONDO_0005395
T47 560-568 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 658-666 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 751-759 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 1283-1300 Disease denotes Parkinson disease http://purl.obolibrary.org/obo/MONDO_0005180
T51 1323-1331 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T52 1422-1430 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 1466-1484 Disease denotes movement disorders http://purl.obolibrary.org/obo/MONDO_0005395
T54 1527-1535 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 1653-1661 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 336-339 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T13 540-546 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T14 989-990 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1390-1391 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1615-1620 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T17 1859-1860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2046-2049 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 417-419 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T4 1635-1647 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T5 1643-1647 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 137-155 Phenotype denotes Movement Disorders http://purl.obolibrary.org/obo/HP_0100022
T22 277-286 Phenotype denotes Parkinson http://purl.obolibrary.org/obo/HP_0001300
T23 305-323 Phenotype denotes movement disorders http://purl.obolibrary.org/obo/HP_0100022
T24 424-436 Phenotype denotes parkinsonism http://purl.obolibrary.org/obo/HP_0001300
T25 476-494 Phenotype denotes movement disorders http://purl.obolibrary.org/obo/HP_0100022
T26 1283-1292 Phenotype denotes Parkinson http://purl.obolibrary.org/obo/HP_0001300
T27 1466-1484 Phenotype denotes movement disorders http://purl.obolibrary.org/obo/HP_0100022

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1566-1579 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 1566-1579 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T22 0-2 Sentence denotes 2.
T23 3-24 Sentence denotes Materials and Methods
T24 25-83 Sentence denotes The cohort consists of two overlapping groups of patients.
T25 84-324 Sentence denotes First, we are including patients of the Chase Family Movement Disorders Center (CFMDC), an ambulatory program affiliated with Hartford HealthCare (HHC), specializing in the care of people with Parkinson disease and other movement disorders.
T26 325-495 Sentence denotes The Center has three locations throughout Connecticut, attending to over 3000 patients with PD and parkinsonism, and over 8900 total patients with all movement disorders.
T27 496-700 Sentence denotes We gathered information on our patients who tested positive for COVID-19 from 8 March 2020 through 6 June 2020, spanning ninety days from the time that the first COVID-19 case was reported in Connecticut.
T28 701-974 Sentence denotes The Center was alerted of patients who contracted COVID-19 by family members, caregivers, extended care facility staff, and physicians at other practices and regional hospitals, or when our own staff and clinicians called the patient for their follow-up telemedicine visit.
T29 975-1040 Sentence denotes We did not do a complete survey of our entire patient population.
T30 1041-1210 Sentence denotes We then conducted telephone interviews and reviewed medical charts from the hospital electronic health record systems (EHRs) to obtain all pertinent data for this paper.
T31 1211-1485 Sentence denotes Second, we reviewed Hartford HealthCare’s EHR to identify patients with Parkinson disease who were admitted for COVID-19 to any of our six affiliate hospitals across the state as a way to estimate the burden of COVID-19 on the population of patients with movement disorders.
T32 1486-1690 Sentence denotes In each of these cases, the diagnosis of COVID-19 was established using reverse transcriptase polymerase chain reaction (rt-PCR) tests that detected nucleic acid from SARS-CoV-2 from respiratory specimen.
T33 1691-2020 Sentence denotes By including patients who were identified through routine telemedicine visits, self-reporting, and inpatient registry review of the HHC EHR, we captured information on a broad spectrum of the population and minimized selection bias that can occur when conducting an exclusively community-based or inpatient hospital-based review.
T34 2021-2109 Sentence denotes This retrospective study has been approved by Hartford HealthCare’s IRB (HHC-2020-0179).
T35 2110-2200 Sentence denotes All relevant de-identified data will be available to qualified investigators upon request.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
153 74-82 Species denotes patients Tax:9606
154 108-116 Species denotes patients Tax:9606
155 265-271 Species denotes people Tax:9606
156 403-411 Species denotes patients Tax:9606
157 458-466 Species denotes patients Tax:9606
158 527-535 Species denotes patients Tax:9606
159 727-735 Species denotes patients Tax:9606
160 927-934 Species denotes patient Tax:9606
161 1021-1028 Species denotes patient Tax:9606
162 1269-1277 Species denotes patients Tax:9606
163 1452-1460 Species denotes patients Tax:9606
164 1653-1663 Species denotes SARS-CoV-2 Tax:2697049
165 1704-1712 Species denotes patients Tax:9606
166 137-155 Disease denotes Movement Disorders MESH:D009069
167 277-294 Disease denotes Parkinson disease MESH:D010300
168 305-323 Disease denotes movement disorders MESH:D009069
169 417-419 Disease denotes PD MESH:D010300
170 424-436 Disease denotes parkinsonism MESH:D010302
171 476-494 Disease denotes movement disorders MESH:D009069
172 560-568 Disease denotes COVID-19 MESH:C000657245
173 658-666 Disease denotes COVID-19 MESH:C000657245
174 751-759 Disease denotes COVID-19 MESH:C000657245
175 1283-1300 Disease denotes Parkinson disease MESH:D010300
176 1323-1331 Disease denotes COVID-19 MESH:C000657245
177 1422-1430 Disease denotes COVID-19 MESH:C000657245
178 1466-1484 Disease denotes movement disorders MESH:D009069
179 1527-1535 Disease denotes COVID-19 MESH:C000657245