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PMC:7553147 / 9060-9915 JSONTXT

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LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 580-585 Body_part denotes shell http://purl.obolibrary.org/obo/UBERON_0006612

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T51 42-43 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 97-98 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 142-143 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 169-173 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T55 267-271 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T56 461-462 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 540-541 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T58 674-678 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T59 721-722 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T57 0-23 Sentence denotes (iv) 3D reconstruction.
T58 24-177 Sentence denotes We then performed a cryoSPARC non-uniform 3D reconstruction, followed by a local angular refinement using RELION with a 3D mask (Zivanov et al., 2018 ▸).
T59 178-438 Sentence denotes Particle images were subjected to CTF refinement and Bayesian polishing (Zivanov et al., 2018 ▸), before performing another two rounds of CTF refinement and local angular refinement in RELION, where we improved the resolution versus the first local refinement.
T60 439-499 Sentence denotes Finally, we performed a non-uniform refinement in cryoSPARC.
T61 500-623 Sentence denotes The reported nominal resolution of 2.96 Å is based on the gold-standard Fourier shell correlation (FSC) of 0.143 criterion.
T62 624-855 Sentence denotes Actually, by using Xmipp Highres (Sorzano et al., 2018 ▸) we could improve the resolution to 2.2 Å in the central region of the volume (the region that is not flexible), but at the expense of reducing it more in the flexible areas.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue
69 643-648 Chemical denotes Xmipp