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PMC:7546716 / 9727-10947 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T173 28-32 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T174 198-213 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T175 208-213 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T176 293-304 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T177 309-320 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T178 367-371 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T179 464-472 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T180 477-487 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T181 630-634 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T182 635-646 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T183 691-699 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T184 711-722 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T185 749-754 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T186 825-830 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T187 836-846 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T188 934-942 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T189 951-962 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T190 1010-1021 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T191 1130-1136 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 28-32 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 630-634 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 1130-1136 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T65 62-70 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 71-80 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T67 160-169 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T68 341-349 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 1182-1190 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T142 28-32 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T143 28-32 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T144 185-213 http://purl.obolibrary.org/obo/CL_0000784 denotes lymphoid and dendritic cells
T145 365-371 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T146 464-472 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T147 630-634 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T148 630-634 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T149 701-702 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T150 825-830 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T151 934-942 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T152 1054-1056 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T153 1054-1056 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T154 1097-1098 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T155 1104-1105 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T143 394-399 Chemical denotes CXCL9 http://purl.obolibrary.org/obo/CHEBI_138154
T144 401-407 Chemical denotes CXCL10 http://purl.obolibrary.org/obo/CHEBI_138157
T145 528-532 Chemical denotes CCL7 http://purl.obolibrary.org/obo/CHEBI_138183
T146 749-754 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T147 817-819 Chemical denotes M2 http://purl.obolibrary.org/obo/CHEBI_34827|http://purl.obolibrary.org/obo/CHEBI_51112
T149 1054-1056 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T153 1100-1102 Chemical denotes NF http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 28-44 Phenotype denotes lung infiltrates http://purl.obolibrary.org/obo/HP_0002113
T12 71-80 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 160-169 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T25 749-764 http://purl.obolibrary.org/obo/GO_0006629 denotes lipid metabolic

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T55 0-121 Sentence denotes The cellular composition of lung infiltrates in patients with COVID-19 pneumonia changes with the progression of disease.
T56 122-681 Sentence denotes Infiltrates in patients with moderate pneumonia include mainly lymphoid and dendritic cells; whereas, severe forms of disease are characterised by massive infiltration of macrophages and neutrophils.15 In patients with COVID-19, expression of T-cell chemoattractants (eg, CXCL9, CXCL10) and their receptors (eg, CXCR3) precedes expression of monocyte and neutrophil chemoattractants (eg, CCL2, CCL3, CCL4, CCL7, CXCL8) and their corresponding receptors (eg, CCR1, CXCR2).15 The composition and phenotypes of lung macrophages also change with disease severity.
T57 682-1220 Sentence denotes Resident alveolar (A-FABP4+) macrophages, which show scavenger and lipid metabolic functions typical of anti-inflammatory or resolving M2-like cells (eg, macrophage receptor MARCO, PPAR-γ, Apo-CI), predominate in mild and moderate forms, whereas CD14+ monocyte-derived macrophages (FCN1high) and chemoattractant (FCN1lowSPP-1+) macrophages, which show highly inflammatory M1-like profiles (eg, nuclear factor-kappa B [NF-κB], CCL2, CCL3), dominate tissue specimens from patients with severe forms of COVID-19 and who are critically ill.15

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
413 394-399 Gene denotes CXCL9 Gene:4283
414 401-407 Gene denotes CXCL10 Gene:3627
415 434-439 Gene denotes CXCR3 Gene:2833
416 510-514 Gene denotes CCL2 Gene:6347
417 516-520 Gene denotes CCL3 Gene:6348
418 522-526 Gene denotes CCL4 Gene:6351
419 528-532 Gene denotes CCL7 Gene:6354
420 534-539 Gene denotes CXCL8 Gene:3576
421 580-584 Gene denotes CCR1 Gene:1230
422 586-591 Gene denotes CXCR2 Gene:3579
423 836-861 Gene denotes macrophage receptor MARCO Gene:8685
424 863-869 Gene denotes PPAR-γ Gene:5468
425 871-877 Gene denotes Apo-CI Gene:341
426 1076-1098 Gene denotes nuclear factor-kappa B Gene:4790
427 1100-1105 Gene denotes NF-κB Gene:4790
428 1108-1112 Gene denotes CCL2 Gene:6347
429 1114-1118 Gene denotes CCL3 Gene:6348
430 832-834 Gene denotes eg Gene:50512
431 576-578 Gene denotes eg Gene:50512
432 506-508 Gene denotes eg Gene:50512
433 430-432 Gene denotes eg Gene:50512
434 390-392 Gene denotes eg Gene:50512
435 48-56 Species denotes patients Tax:9606
436 137-145 Species denotes patients Tax:9606
437 327-335 Species denotes patients Tax:9606
438 1152-1160 Species denotes patients Tax:9606
439 62-80 Disease denotes COVID-19 pneumonia MESH:C000657245
440 160-169 Disease denotes pneumonia MESH:D011014
441 341-349 Disease denotes COVID-19 MESH:C000657245
442 1182-1190 Disease denotes COVID-19 MESH:C000657245
443 1203-1217 Disease denotes critically ill MESH:D016638

2_test

Id Subject Object Predicate Lexical cue
33073244-32398875-66244538 321-323 32398875 denotes 15
33073244-32398875-66244539 593-595 32398875 denotes 15
33073244-32398875-66244540 1218-1220 32398875 denotes 15