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PMC:7546716 / 868-2160 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 2-6 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T17 52-63 Body_part denotes granulocyte http://purl.org/sig/ont/fma/fma62854
T18 64-74 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T19 114-119 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T20 250-252 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T21 299-313 Body_part denotes myofibroblasts http://purl.org/sig/ont/fma/fma0326458
T22 464-466 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T23 508-513 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T24 522-526 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T25 539-547 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T26 848-852 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T27 1141-1151 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T28 1241-1250 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 848-852 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 197-207 Disease denotes thromboses http://purl.obolibrary.org/obo/MONDO_0000831
T9 240-248 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 268-286 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T11 636-644 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 656-703 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T13 656-689 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 705-713 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 848-860 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T16 877-885 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 924-932 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 952-964 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T19 983-1018 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T20 989-1018 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T21 1024-1036 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T22 1075-1120 Disease denotes secondary haemophagocytic lymphohistiocytosis http://purl.obolibrary.org/obo/MONDO_0015542
T23 1141-1171 Disease denotes macrophage activation syndrome http://purl.obolibrary.org/obo/MONDO_0015545
T24 1173-1176 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T25 1269-1272 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 112-119 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T11 318-328 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T12 480-483 http://purl.obolibrary.org/obo/CLO_0051025 denotes ST2
T13 506-513 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T14 522-526 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T15 848-852 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T16 848-852 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T17 1124-1129 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 1152-1162 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T19 1200-1207 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 128-137 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T10 138-148 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T11 250-252 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T13 464-466 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T15 804-813 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 268-286 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T3 848-860 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T4 989-1009 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T5 1024-1036 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 318-351 http://purl.obolibrary.org/obo/GO_0001837 denotes epithelial–mesenchymal transition
T2 952-964 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T3 1141-1162 http://purl.obolibrary.org/obo/GO_0042116 denotes macrophage activation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 209-352 Sentence denotes In patients who survive severe COVID-19, IL-33 might drive pulmonary fibrosis by inducing myofibroblasts and epithelial–mesenchymal transition.
T9 353-556 Sentence denotes We discuss the therapeutic implications of these hypothetical pathways, including use of therapies that target IL-33 (eg, anti-ST2), T helper 17-like γδ T cells, immune cell homing, and cytokine balance.
T10 558-570 Sentence denotes Introduction
T11 571-746 Sentence denotes Intensive efforts are underway to unravel the immunopathology of COVID-19, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and to control the pandemic.
T12 747-1178 Sentence denotes Given the public health emergency, scarcity of effective antiviral therapies, and rapid evolution of lung disease associated with COVID-19, patients who are critically ill with COVID-19 and have exuberant inflammation, life-threatening acute respiratory distress syndrome, and coagulopathy, are basically treated as if they had secondary haemophagocytic lymphohistiocytosis or virus-associated macrophage activation syndrome (MAS).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
28 52-100 Gene denotes granulocyte–macrophage colony-stimulating factor Gene:1437
29 250-255 Gene denotes IL-33 Gene:90865
30 464-469 Gene denotes IL-33 Gene:90865
31 480-483 Gene denotes ST2 Gene:6761
32 471-473 Gene denotes eg Gene:50512
34 212-220 Species denotes patients Tax:9606
40 240-248 Disease denotes COVID-19 MESH:C000657245
41 268-286 Disease denotes pulmonary fibrosis MESH:D011658
70 656-703 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
71 705-715 Species denotes SARS-CoV-2 Tax:2697049
72 887-895 Species denotes patients Tax:9606
73 636-644 Disease denotes COVID-19 MESH:C000657245
74 848-860 Disease denotes lung disease MESH:D008171
75 877-885 Disease denotes COVID-19 MESH:C000657245
76 904-918 Disease denotes critically ill MESH:D016638
77 924-932 Disease denotes COVID-19 MESH:C000657245
78 952-964 Disease denotes inflammation MESH:D007249
79 983-1018 Disease denotes acute respiratory distress syndrome MESH:D012128
80 1024-1036 Disease denotes coagulopathy MESH:D001778
81 1075-1120 Disease denotes secondary haemophagocytic lymphohistiocytosis MESH:D060085
82 1141-1171 Disease denotes macrophage activation syndrome MESH:D055501