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PMC:7546716 / 5392-6466 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T76 40-45 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T77 129-138 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T78 172-176 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T79 340-345 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T80 351-353 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T81 368-376 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T82 395-400 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T83 446-451 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T84 487-491 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T85 535-537 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T86 592-597 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T87 605-607 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T88 673-678 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T89 755-763 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T90 811-816 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T91 856-858 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T92 915-917 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T93 929-931 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T94 975-979 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T95 980-984 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T96 992-997 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 172-176 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 487-491 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T53 172-184 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T54 492-504 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T55 1015-1023 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 1064-1073 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 21-26 http://purl.obolibrary.org/obo/CLO_0053477 denotes GATA3
T61 28-33 http://purl.obolibrary.org/obo/PR_000001350 denotes Foxp3
T62 35-39 http://purl.obolibrary.org/obo/CL_0000792 denotes Treg
T63 40-45 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T64 172-176 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T65 172-176 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T66 306-309 http://purl.obolibrary.org/obo/CLO_0051025 denotes ST2
T67 324-345 http://purl.obolibrary.org/obo/CL_0001065 denotes innate lymphoid cells
T68 395-400 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T69 430-451 http://purl.obolibrary.org/obo/CL_0001065 denotes innate lymphoid cells
T70 487-491 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T71 487-491 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T72 590-597 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T73 598-600 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T74 671-678 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T75 689-690 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 735-736 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 809-816 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T78 948-949 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 973-979 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T80 992-997 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T58 351-353 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T60 535-537 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T62 605-607 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T64 705-713 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T65 856-858 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T67 915-917 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T69 929-931 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 172-184 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T10 1064-1073 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T12 109-118 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T13 492-504 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T14 714-720 http://purl.obolibrary.org/obo/GO_0007613 denotes memory

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-1074 Sentence denotes The dysregulation of GATA3+ Foxp3+ Treg cells might result in impaired immunological tolerance and increased secretion of type 2 cytokines, thus promoting autoinflammatory lung disease.16 TGFβ2, which is also increased in the bronchoalveolar lavage fluid of patients with COVID-19,11 might further enhance ST2 expression in innate lymphoid cells, and IL-33 is the key cytokine that drives these cells to differentiate into type 2 innate lymphoid cells (ILC2).17 ILC2 subsequently elicit lung inflammation by releasing large amounts of IL-9, which promotes their own survival and expands γδ T cells.18, 19 IL-9 is known to stimulate proliferation and expansion of Vγ9Vδ2+ T cells that have a predominantly effector memory phenotype and a combined Th1–Th17 cytokine response profile.19 When exposed to TGFβ, γδ T cells can also become an important source of IL-9.20 By acting in both autocrine and paracrine manners, IL-33-induced IL-9 might sustain a proinflammatory ILC2–γδT cell axis in the lungs of patients with COVID-19, thus initiating mild–moderate forms of pneumonia.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
218 21-26 Gene denotes GATA3 Gene:2625
219 28-33 Gene denotes Foxp3 Gene:50943
220 188-193 Gene denotes TGFβ2 Gene:7042
221 306-309 Gene denotes ST2 Gene:6761
222 351-356 Gene denotes IL-33 Gene:90865
223 535-539 Gene denotes IL-9 Gene:3578
224 605-609 Gene denotes IL-9 Gene:3578
225 800-804 Gene denotes TGFβ Gene:7039
226 856-860 Gene denotes IL-9 Gene:3578
227 915-920 Gene denotes IL-33 Gene:90865
228 929-933 Gene denotes IL-9 Gene:3578
230 258-266 Species denotes patients Tax:9606
231 1001-1009 Species denotes patients Tax:9606
234 62-94 Disease denotes impaired immunological tolerance MESH:D018149
235 155-184 Disease denotes autoinflammatory lung disease MESH:D008171
236 272-280 Disease denotes COVID-19 MESH:C000657245
237 487-504 Disease denotes lung inflammation MESH:D011014
238 1015-1023 Disease denotes COVID-19 MESH:C000657245
239 1064-1073 Disease denotes pneumonia MESH:D011014

2_test

Id Subject Object Predicate Lexical cue
33073244-28196763-66244519 185-187 28196763 denotes 16
33073244-32228226-66244520 281-283 32228226 denotes 11
33073244-31911623-66244521 459-461 31911623 denotes 17
33073244-26129648-66244522 598-600 26129648 denotes 18
33073244-27543964-66244523 602-604 27543964 denotes 19
33073244-27543964-66244524 781-783 27543964 denotes 19
33073244-27791087-66244525 861-863 27791087 denotes 20