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PMC:7546716 / 30511-31355 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T576 0-2 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T577 188-193 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T578 259-261 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T579 276-285 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T580 297-299 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T581 308-318 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T582 485-487 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T583 604-612 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T584 640-650 Body_part denotes fibroblast http://purl.org/sig/ont/fma/fma63877
T585 763-768 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T586 799-816 Body_part denotes connective tissue http://purl.org/sig/ont/fma/fma9640

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T39 188-193 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T40 799-816 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T41 810-816 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T180 51-69 Disease denotes systemic sclerosis http://purl.obolibrary.org/obo/MONDO_0005100
T181 105-123 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T182 143-172 Disease denotes idiopathic pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0008345
T183 154-172 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T184 349-367 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T185 420-428 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T186 535-543 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T423 220-223 http://purl.obolibrary.org/obo/CLO_0051025 denotes ST2
T424 437-439 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T425 640-650 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblast
T426 761-768 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T427 799-816 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T428 799-816 http://www.ebi.ac.uk/efo/EFO_0000952 denotes connective tissue

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T448 0-2 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T450 259-261 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T452 297-299 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T454 485-487 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T52 105-123 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T53 154-172 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T54 349-367 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T83 545-551 http://purl.obolibrary.org/obo/GO_0040007 denotes Growth
T84 589-595 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T85 621-627 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T86 651-657 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T87 817-823 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T131 0-544 Sentence denotes IL-33 concentrations are elevated in patients with systemic sclerosis and correlate with the severity of pulmonary fibrosis, and patients with idiopathic pulmonary fibrosis show increased serum concentrations of soluble ST2 when the disease is exacerbated.82 IL-33 can induce cytokines (eg, TGFβ, IL-13) and chemokines (eg, CCL2, CXCL6) involved in pulmonary fibrosis, which are also increased in patients infected with SARS-CoV-2,6, 9, 11, 15, 26 thus suggesting additional roles for IL-33 in driving the post-acute fibrotic phase of COVID-19.
T132 545-844 Sentence denotes Growth factors such as vascular endothelial growth factor, platelet-derived growth factor, and fibroblast growth factor are all involved in fibrotic processes and are overexpressed in patients with COVID-19,9 and γδ T cells exposed to TGFβ might produce connective tissue growth factor (figure 2).83

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1299 0-5 Gene denotes IL-33 Gene:90865
1300 220-223 Gene denotes ST2 Gene:6761
1301 259-264 Gene denotes IL-33 Gene:90865
1302 291-295 Gene denotes TGFβ Gene:7039
1303 297-302 Gene denotes IL-13 Gene:3596
1304 324-328 Gene denotes CCL2 Gene:6347
1305 330-335 Gene denotes CXCL6 Gene:6372
1306 485-490 Gene denotes IL-33 Gene:90865
1307 568-602 Gene denotes vascular endothelial growth factor Gene:7422
1308 780-784 Gene denotes TGFβ Gene:7039
1309 320-322 Gene denotes eg Gene:50512
1310 287-289 Gene denotes eg Gene:50512
1311 37-45 Species denotes patients Tax:9606
1312 129-137 Species denotes patients Tax:9606
1313 397-405 Species denotes patients Tax:9606
1314 420-430 Species denotes SARS-CoV-2 Tax:2697049
1315 729-737 Species denotes patients Tax:9606
1316 799-831 Gene denotes connective tissue growth factor Gene:1490
1317 51-69 Disease denotes systemic sclerosis MESH:D012595
1318 105-123 Disease denotes pulmonary fibrosis MESH:D011658
1319 143-172 Disease denotes idiopathic pulmonary fibrosis MESH:D054990
1320 349-367 Disease denotes pulmonary fibrosis MESH:D011658
1321 406-414 Disease denotes infected MESH:D007239
1322 535-543 Disease denotes COVID-19 MESH:C000657245
1323 743-751 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
33073244-30308508-66244631 256-258 30308508 denotes 82
33073244-31986264-66244632 434-435 31986264 denotes 9
33073244-32228226-66244633 437-439 32228226 denotes 11
33073244-32398875-66244634 441-443 32398875 denotes 15
33073244-32407669-66244635 445-447 32407669 denotes 26
33073244-31986264-66244636 752-753 31986264 denotes 9
33073244-12496395-66244637 842-844 12496395 denotes 83