PMC:7546716 / 12446-12966 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7546716","sourcedb":"PMC","sourceid":"7546716","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7546716","text":"Lymphocyte impairment in COVID-19 resembles the cytotoxic dysfunction of CD8+ cytotoxic T lymphocytes and natural killer cells observed in familial haemophagocytic lymphohistiocytosis, in which T cell dysfunction is the result of heterozygous mutations in genes affecting the expression of perforin or other proteins involved in the trafficking and docking of cytolytic granules,1 and in patients who are predisposed to MAS, in whom IL-6 overexpression can reduce perforin and granzyme B concentration inside granules.31","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T218","span":{"begin":0,"end":10},"obj":"Body_part"},{"id":"T219","span":{"begin":78,"end":101},"obj":"Body_part"},{"id":"T220","span":{"begin":106,"end":126},"obj":"Body_part"},{"id":"T221","span":{"begin":121,"end":126},"obj":"Body_part"},{"id":"T222","span":{"begin":196,"end":200},"obj":"Body_part"},{"id":"T223","span":{"begin":308,"end":316},"obj":"Body_part"},{"id":"T224","span":{"begin":433,"end":435},"obj":"Body_part"}],"attributes":[{"id":"A218","pred":"fma_id","subj":"T218","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A219","pred":"fma_id","subj":"T219","obj":"http://purl.org/sig/ont/fma/fma70573"},{"id":"A220","pred":"fma_id","subj":"T220","obj":"http://purl.org/sig/ont/fma/fma63147"},{"id":"A221","pred":"fma_id","subj":"T221","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A222","pred":"fma_id","subj":"T222","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A223","pred":"fma_id","subj":"T223","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A224","pred":"fma_id","subj":"T224","obj":"http://purl.org/sig/ont/fma/fma86578"},{"subj":"T218","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T219","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T220","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T221","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T222","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T223","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T224","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T77","span":{"begin":25,"end":33},"obj":"Disease"},{"id":"T78","span":{"begin":420,"end":423},"obj":"Disease"}],"attributes":[{"id":"A77","pred":"mondo_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A78","pred":"mondo_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/MONDO_0015545"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T177","span":{"begin":73,"end":76},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T178","span":{"begin":106,"end":126},"obj":"http://purl.obolibrary.org/obo/CL_0000623"},{"id":"T179","span":{"begin":194,"end":200},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T180","span":{"begin":256,"end":261},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T181","span":{"begin":486,"end":487},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"}],"attributes":[{"subj":"T177","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T178","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T179","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T180","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T181","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T164","span":{"begin":308,"end":316},"obj":"Chemical"},{"id":"T165","span":{"begin":433,"end":435},"obj":"Chemical"}],"attributes":[{"id":"A164","pred":"chebi_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A165","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A166","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"subj":"T164","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T165","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T16","span":{"begin":194,"end":212},"obj":"Phenotype"}],"attributes":[{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0005435"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T60","span":{"begin":0,"end":520},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T60","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"501","span":{"begin":73,"end":76},"obj":"Gene"},{"id":"502","span":{"begin":433,"end":437},"obj":"Gene"},{"id":"503","span":{"begin":477,"end":487},"obj":"Gene"},{"id":"504","span":{"begin":388,"end":396},"obj":"Species"},{"id":"505","span":{"begin":25,"end":33},"obj":"Disease"},{"id":"506","span":{"begin":48,"end":69},"obj":"Disease"},{"id":"507","span":{"begin":139,"end":183},"obj":"Disease"}],"attributes":[{"id":"A501","pred":"tao:has_database_id","subj":"501","obj":"Gene:925"},{"id":"A502","pred":"tao:has_database_id","subj":"502","obj":"Gene:3569"},{"id":"A503","pred":"tao:has_database_id","subj":"503","obj":"Gene:3002"},{"id":"A504","pred":"tao:has_database_id","subj":"504","obj":"Tax:9606"},{"id":"A505","pred":"tao:has_database_id","subj":"505","obj":"MESH:C000657245"},{"id":"A506","pred":"tao:has_database_id","subj":"506","obj":"MESH:D064420"},{"id":"A507","pred":"tao:has_database_id","subj":"507","obj":"MESH:D051359"},{"subj":"501","pred":"source","obj":"LitCovid-PubTator"},{"subj":"502","pred":"source","obj":"LitCovid-PubTator"},{"subj":"503","pred":"source","obj":"LitCovid-PubTator"},{"subj":"504","pred":"source","obj":"LitCovid-PubTator"},{"subj":"505","pred":"source","obj":"LitCovid-PubTator"},{"subj":"506","pred":"source","obj":"LitCovid-PubTator"},{"subj":"507","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"2_test","denotations":[{"id":"33073244-30774631-66244547","span":{"begin":379,"end":380},"obj":"30774631"},{"id":"33073244-26251193-66244548","span":{"begin":518,"end":520},"obj":"26251193"}],"attributes":[{"subj":"33073244-30774631-66244547","pred":"source","obj":"2_test"},{"subj":"33073244-26251193-66244548","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#cf93ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#93ecb5"},{"id":"LitCovid-PD-CLO","color":"#ec9b93"},{"id":"LitCovid-PD-CHEBI","color":"#93a5ec"},{"id":"LitCovid-PD-HP","color":"#bfec93"},{"id":"LitCovid-sentences","color":"#ec93d9"},{"id":"LitCovid-PubTator","color":"#93ece5"},{"id":"2_test","color":"#eccb93"}]}]}}