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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 0-5 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T2 312-324 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T3 333-348 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T4 605-608 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 629-648 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T6 837-859 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T7 1255-1260 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T8 2173-2179 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T9 2855-2859 Body_part denotes Eyes http://purl.org/sig/ont/fma/fma54448
T10 2917-2926 Body_part denotes brainstem http://purl.org/sig/ont/fma/fma79876
T11 3400-3405 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T12 3589-3601 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T13 3619-3646 Body_part denotes body of the corpus callosum http://purl.org/sig/ont/fma/fma61947
T14 3631-3646 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T15 3701-3706 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T16 3878-3887 Body_part denotes meningeal http://purl.org/sig/ont/fma/fma231572
T17 3901-3920 Body_part denotes Cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T18 3922-3925 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T19 3971-3979 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T20 4003-4010 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T21 4015-4025 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T22 4030-4045 Body_part denotes red blood cells http://purl.org/sig/ont/fma/fma62845
T23 4040-4045 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T24 4047-4050 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T25 4051-4056 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T26 4093-4096 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T27 4097-4102 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T28 4103-4119 Body_part denotes immunoglobulin G http://purl.org/sig/ont/fma/fma62872
T29 4121-4124 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T30 4161-4164 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T31 4185-4188 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T32 4571-4587 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T33 4583-4587 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T34 4640-4647 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 4735-4750 Body_part denotes (interleukin)-6 http://purl.org/sig/ont/fma/fma264829
T36 4736-4747 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T37 5924-5927 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T38 6017-6029 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T39 6038-6065 Body_part denotes genu of the corpus callosum http://purl.org/sig/ont/fma/fma61946
T40 6050-6065 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T41 6261-6288 Body_part denotes genu of the corpus callosum http://purl.org/sig/ont/fma/fma61946
T42 6273-6288 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T43 6323-6335 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T44 6477-6486 Body_part denotes meningeal http://purl.org/sig/ont/fma/fma231572
T45 6587-6592 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T46 6843-6848 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T47 6857-6860 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T48 6887-6890 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T49 7006-7011 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T50 7084-7089 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T51 7314-7336 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T52 7593-7608 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T53 7968-7976 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T54 8018-8027 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T55 8254-8269 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T56 8479-8494 Body_part denotes corpus callosum http://purl.org/sig/ont/fma/fma86464
T57 8771-8776 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T58 8777-8783 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T59 8941-8946 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T60 9546-9555 Body_part denotes meningeal http://purl.org/sig/ont/fma/fma231572
T61 9642-9645 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T62 9664-9667 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T63 9737-9745 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T64 9772-9775 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T65 9893-9914 Body_part denotes capillary endothelium http://purl.org/sig/ont/fma/fma62114
T66 9922-9927 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T67 9928-9933 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T68 10050-10053 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T69 10061-10064 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T70 10222-10225 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T71 10285-10290 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T72 10291-10296 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T73 10483-10488 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T74 10607-10610 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T75 10799-10809 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T76 10958-10963 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T77 11010-11032 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T78 11558-11569 Body_part denotes endothelium http://purl.org/sig/ont/fma/fma63916

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 0-5 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T2 312-324 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T3 333-348 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T4 333-339 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T5 629-648 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T6 837-859 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T7 845-859 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T8 1255-1260 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T9 2173-2179 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T10 2917-2926 Body_part denotes brainstem http://purl.obolibrary.org/obo/UBERON_0002298
T11 3400-3405 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T12 3589-3601 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T13 3619-3646 Body_part denotes body of the corpus callosum http://purl.obolibrary.org/obo/UBERON_0015510
T14 3631-3646 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T15 3631-3637 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T16 3701-3706 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T17 3901-3920 Body_part denotes Cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T18 4034-4039 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 4051-4056 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T20 4097-4102 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T21 4577-4582 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T22 6017-6029 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T23 6038-6065 Body_part denotes genu of the corpus callosum http://purl.obolibrary.org/obo/UBERON_0015599
T24 6050-6065 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T25 6050-6056 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T26 6261-6288 Body_part denotes genu of the corpus callosum http://purl.obolibrary.org/obo/UBERON_0015599
T27 6273-6288 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T28 6273-6279 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T29 6323-6335 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T30 6587-6592 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T31 6843-6848 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T32 7006-7011 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T33 7084-7089 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T34 7314-7336 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T35 7322-7336 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T36 7593-7608 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T37 7593-7599 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T38 7708-7714 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T39 8254-8269 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T40 8254-8260 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T41 8479-8494 Body_part denotes corpus callosum http://purl.obolibrary.org/obo/UBERON_0002336
T42 8479-8485 Body_part denotes corpus http://purl.obolibrary.org/obo/UBERON_3000645
T43 8771-8776 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T44 8777-8783 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T45 8941-8946 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T46 9893-9902 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T47 9903-9914 Body_part denotes endothelium http://purl.obolibrary.org/obo/UBERON_0001986
T48 9922-9927 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T49 9928-9933 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T50 10285-10304 Body_part denotes blood brain barrier http://purl.obolibrary.org/obo/UBERON_0000120
T51 10285-10290 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T52 10291-10296 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T53 10483-10488 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T54 11010-11032 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T55 11018-11032 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T56 11558-11569 Body_part denotes endothelium http://purl.obolibrary.org/obo/UBERON_0001986

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 42-50 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 102-110 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 544-591 Disease denotes Severe acute respiratory syndrome coronavirus-2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 544-577 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 593-601 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 962-970 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 973-982 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 1105-1113 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1822-1834 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T10 1839-1856 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T11 1975-1983 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1987-1996 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 2129-2162 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 2167-2187 Disease denotes acute kidney failure http://purl.obolibrary.org/obo/MONDO_0002492
T15 2173-2187 Disease denotes kidney failure http://purl.obolibrary.org/obo/MONDO_0001106
T16 2696-2698 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T17 2789-2795 Disease denotes anuria http://purl.obolibrary.org/obo/MONDO_0002476
T18 4150-4158 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 4283-4292 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 4347-4349 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T21 4380-4398 Disease denotes multiorgan failure http://purl.obolibrary.org/obo/MONDO_0043726
T22 6653-6661 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 6662-6671 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 6876-6884 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 6929-6937 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 6938-6947 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 7084-7105 Disease denotes brain vascular injury http://purl.obolibrary.org/obo/MONDO_0005621
T28 7099-7105 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T29 7443-7451 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 7454-7463 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 7682-7690 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 7772-7782 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T33 7859-7867 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T34 8071-8077 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T36 8151-8155 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 8161-8170 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 8305-8313 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 8540-8548 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 8881-8889 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 9027-9059 Disease denotes Acute necrotizing encephalopathy http://purl.obolibrary.org/obo/MONDO_0003336
T42 9045-9059 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T43 9061-9064 Disease denotes ANE http://purl.obolibrary.org/obo/MONDO_0003336
T44 9137-9145 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 9326-9345 Disease denotes meningoencephalitis http://purl.obolibrary.org/obo/MONDO_0005845
T46 9355-9369 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T47 9374-9387 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T48 9589-9601 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T49 9631-9639 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 9980-9988 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 10442-10454 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T52 10474-10496 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T53 10719-10727 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T54 10728-10737 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T55 10799-10829 Disease denotes macrophage activation syndrome http://purl.obolibrary.org/obo/MONDO_0015545
T56 10831-10834 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T57 11165-11173 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 11644-11650 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T59 11757-11765 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 12904-12907 Disease denotes MSD http://purl.obolibrary.org/obo/MONDO_0010088

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-5 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T2 0-5 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T3 52-53 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 100-101 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 824-829 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 837-859 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T7 837-859 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T8 837-859 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T9 936-937 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1066-1067 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1202-1203 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1255-1260 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T13 1255-1260 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T14 1645-1648 http://purl.obolibrary.org/obo/CLO_0002359 denotes CER
T15 1667-1669 http://purl.obolibrary.org/obo/CLO_0002709 denotes DB
T16 1779-1780 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2173-2179 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T18 2173-2179 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T19 2173-2179 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T20 2524-2525 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T21 2855-2859 http://www.ebi.ac.uk/efo/EFO_0000827 denotes Eyes
T22 3044-3045 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 3074-3080 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T24 3117-3125 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T25 3167-3177 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T26 3213-3222 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T27 3353-3354 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3400-3405 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T29 3400-3405 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T30 3701-3706 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T31 3701-3706 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T32 4030-4045 http://purl.obolibrary.org/obo/CL_0000232 denotes red blood cells
T33 4237-4238 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 4274-4282 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T35 4360-4361 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 4577-4582 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 4583-4587 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T38 4676-4679 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T39 4735-4750 http://purl.obolibrary.org/obo/PR_000001393 denotes (interleukin)-6
T40 4764-4767 http://purl.obolibrary.org/obo/CLO_0054064 denotes 491
T41 4910-4919 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activated
T42 5120-5128 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T43 5120-5128 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T44 5162-5170 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T45 5162-5170 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T46 5232-5240 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T47 5232-5240 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T48 5286-5288 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T49 5886-5887 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 5929-5930 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T51 6587-6592 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T52 6587-6592 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T53 6628-6629 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 6843-6848 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T55 6843-6848 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T56 7006-7011 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T57 7006-7011 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T58 7084-7089 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T59 7084-7089 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T60 7301-7306 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T61 7314-7336 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T62 7314-7336 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T63 7314-7336 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T64 7417-7418 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7636-7637 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 7708-7714 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T67 7968-7976 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T68 8103-8104 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 8771-8776 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T70 8771-8776 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T71 8835-8836 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8860-8863 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T73 8941-8946 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T74 8941-8946 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T75 9116-9119 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T76 9520-9521 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 9695-9696 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T78 9718-9723 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T79 9813-9816 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T80 9845-9850 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T81 9903-9914 http://purl.obolibrary.org/obo/UBERON_0001986 denotes endothelium
T82 9922-9927 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T83 9922-9927 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T84 9928-9933 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T85 9928-9933 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T86 10134-10136 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T87 10142-10143 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 10285-10290 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T89 10285-10290 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T90 10291-10296 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T91 10291-10296 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T92 10407-10408 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 10459-10460 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 10483-10488 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T95 10577-10578 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 10594-10599 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T97 10696-10697 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 10711-10713 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T99 10797-10798 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 10810-10820 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T101 10871-10872 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T102 10958-10963 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T103 10965-10966 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T104 11010-11032 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T105 11010-11032 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T106 11010-11032 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T107 11298-11299 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 11400-11401 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 11465-11466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 11558-11569 http://purl.obolibrary.org/obo/UBERON_0001986 denotes endothelium
T111 11672-11674 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2477-2485 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T2 2487-2505 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T3 2511-2522 Chemical denotes ceftaroline http://purl.obolibrary.org/obo/CHEBI_70729
T4 3030-3033 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T5 3362-3365 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T6 3816-3826 Chemical denotes gadolinium http://purl.obolibrary.org/obo/CHEBI_33375
T7 3971-3979 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T8 4003-4010 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T10 4640-4647 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 4732-4734 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T13 4773-4775 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 4776-4778 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T15 4779-4787 Chemical denotes Ferritin http://purl.obolibrary.org/obo/CHEBI_82594
T16 4811-4813 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T17 4814-4816 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T18 4982-4992 Chemical denotes Creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T19 5025-5029 Chemical denotes Urea http://purl.obolibrary.org/obo/CHEBI_16199
T20 5030-5038 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T21 5191-5197 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T22 5261-5275 Chemical denotes carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526
T23 5261-5267 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T25 5525-5531 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T26 5680-5684 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T27 5685-5693 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T28 5760-5770 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T29 5814-5816 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T30 9287-9290 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T31 9737-9745 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1822-1834 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T2 1839-1856 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T3 1900-1907 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T4 1909-1914 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 1916-1923 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T6 1929-1945 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T7 1987-1996 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 2167-2187 Phenotype denotes acute kidney failure http://purl.obolibrary.org/obo/HP_0001919
T9 2789-2795 Phenotype denotes anuria http://purl.obolibrary.org/obo/HP_0100519
T10 2837-2841 Phenotype denotes Coma http://purl.obolibrary.org/obo/HP_0001259
T11 2947-2952 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T12 4369-4374 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T13 8071-8077 Phenotype denotes stroke http://purl.obolibrary.org/obo/HP_0001297
T14 9027-9059 Phenotype denotes Acute necrotizing encephalopathy http://purl.obolibrary.org/obo/HP_0006965
T15 9061-9064 Phenotype denotes ANE http://purl.obolibrary.org/obo/HP_0006965
T16 9222-9227 Phenotype denotes edema http://purl.obolibrary.org/obo/HP_0000969
T17 9287-9304 Phenotype denotes EEG abnormalities http://purl.obolibrary.org/obo/HP_0002353
T18 9355-9369 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T19 9374-9387 Phenotype denotes renal failure http://purl.obolibrary.org/obo/HP_0000083
T20 9589-9601 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T21 10728-10737 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2053-2066 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 2053-2066 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T3 2893-2899 http://purl.obolibrary.org/obo/GO_0060004 denotes reflex
T4 7868-7877 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T5 7977-7986 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T6 9232-9240 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T7 9232-9240 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T8 9232-9240 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T9 9232-9240 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T10 10442-10454 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T11 10553-10562 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown
T12 10799-10820 http://purl.obolibrary.org/obo/GO_0042116 denotes macrophage activation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-65 Sentence denotes Brain microvascular occlusive disorder in COVID-19: a case report
T2 67-75 Sentence denotes Abstract
T3 76-543 Sentence denotes We describe the case of a COVID-19 patient with severely impaired consciousness after sedation hold, showing magnetic resonance imaging (MRI) findings of (i) acute bilateral supratentorial ischemic lesions involving the fronto-parietal white matter and the corpus callosum and (ii) multiple diffuse susceptibility weighted imaging (SWI) hypointense foci, infra and supratentorial, predominantly bithalamic, suggestive of microhemorrhage or alternatively microthrombi.
T4 544-649 Sentence denotes Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) RNA was detected in the cerebrospinal fluid.
T5 650-743 Sentence denotes Our findings suggest the occurrence of vascular damage, predominantly involving microvessels.
T6 744-1001 Sentence denotes The underlying mechanisms, which include direct and indirect penetration of the virus to the central nervous system and systemic cardiorespiratory complications, are yet to be elucidated, and a direct correlation with SARS-CoV-2 infection remains uncertain.
T7 1003-1015 Sentence denotes Introduction
T8 1016-1179 Sentence denotes Neurological manifestations have been observed in a relevant proportion of patients with COVID-19 [1] with different magnetic resonance imaging (MRI) patterns [2].
T9 1180-1544 Sentence denotes We report the case of a patient with severe neurological complications and brain MRI evidence of multiple supratentorial areas of restricted diffusion at diffusion-weighted imaging (DWI), consistent with acute ischemic lesions, and several susceptibility-weighted imaging (SWI) punctate hypointensities, most referable to microbleeds or alternatively microthrombi.
T10 1545-1657 Sentence denotes Collection and scientific use of the patient’s data were approved by the regional ethics committee (CER Liguria:
T11 1658-1680 Sentence denotes 173/2020-DB id 10512).
T12 1681-1752 Sentence denotes Consent to data publication was verbally obtained from the next of kin.
T13 1754-1765 Sentence denotes Case report
T14 1766-1946 Sentence denotes On March 25, a 68-year-old man with previous history of hypertension and diabetes mellitus presented to the emergency department with dyspnea, fever, fatigue, and productive cough.
T15 1947-2099 Sentence denotes Diagnosis of coronavirus 2 (SARS-CoV-2) pneumonia was confirmed by nasopharyngeal swab specimen using the transcriptase-polymerase chain reaction assay.
T16 2100-2346 Sentence denotes Following the development of severe acute respiratory syndrome and acute kidney failure, the patient was admitted to our intensive care unit (ICU) and intubated; mechanical ventilation and continuous veno-venous hemodialysis (CVVHD) were started.
T17 2347-2458 Sentence denotes Table 1 reports the main mechanical ventilation settings, data on respiratory function, and laboratory results.
T18 2459-2523 Sentence denotes He was started on steroids, hydroxychloroquine, and ceftaroline.
T19 2524-2650 Sentence denotes A prophylactic dose of enoxaparin (6000 u once/day) was subsequently switched to 6000 u/bd, due to increase of D-dimer values.
T20 2651-2796 Sentence denotes Respiratory function improved over days, and he was switched to assisted mechanical ventilation, while CVVHD was continued for persistent anuria.
T21 2797-2881 Sentence denotes On day 9, on sedation hold, his Glasgow Coma Score was 3 (Eyes 1,Verbal 1, Motor 1).
T22 2882-2969 Sentence denotes Photomotor reflex was present, and brainstem reflexes (including cough) were preserved.
T23 2970-3232 Sentence denotes After 2 days from sedation hold, an electroencephalography (EEG) revealed a severe voltage attenuation (signal diffusely < 20 μV), with background activity substituted by irregular theta and delta activities widely distributed, without antero-posterior gradient.
T24 3233-3336 Sentence denotes No focal or generalized interictal/ictal epileptiform discharges nor periodic discharges were observed.
T25 3337-3396 Sentence denotes Two days later, a second EEG showed no significant changes.
T26 3397-3647 Sentence denotes At brain MRI (Fig. 1), DWI shows multiple small supratentorial areas of restricted diffusion, consistent with acute ischemic foci, involving the bilateral fronto-parietal deep and subcortical white matter and the genu and body of the corpus callosum.
T27 3648-3766 Sentence denotes SWI revealed several hypointense foci throughout the brain, both infratentorial and supratentorial, mostly bithalamic.
T28 3767-3900 Sentence denotes On T1-weighted images obtained after intravenous gadolinium injection, there was no evidence of parenchymal or meningeal enhancement.
T29 3901-4149 Sentence denotes Cerebrospinal fluid (CSF) analysis showed 0.492 g/L [0.130–0.520 g/L] proteins, 88 mg/dL [44–74 mg/L] glucose, no leukocytes and red blood cells, CSF/serum albumin ratio 7.74 [1.92–7.30], and CSF/serum immunoglobulin G (IgG) ratio 4.48 [0.82–3.26].
T30 4150-4189 Sentence denotes SARS-CoV-2 RNA was detected in the CSF.
T31 4190-4293 Sentence denotes Over the following days, the patient developed a systemic candida and gram-negative bacteria infection.
T32 4294-4399 Sentence denotes His respiratory function significantly worsened, and he developed a septic shock with multiorgan failure.
T33 4400-4418 Sentence denotes He died on day 21.
T34 4419-4493 Sentence denotes Table 1 Laboratory data, respiratory function, and mechanical ventilation†
T35 4494-4570 Sentence denotes Variable Reference range, adults On admission ICU day 3 ICU day 7 ICU day 14
T36 4571-4628 Sentence denotes White blood cell (109/L) 4.50–9.80 9.58 13.99 24.14 23.58
T37 4629-4679 Sentence denotes C-reactive protein (mg/L) 0.0–5.0 137 77.7 138 121
T38 4680-4731 Sentence denotes Procalcitonin (mcg/L) 0.00–0.25 1.37 2.09 1.67 2.07
T39 4732-4778 Sentence denotes IL (interleukin)-6 (ng/L) < 3.4 491 32.7 NA NA
T40 4779-4816 Sentence denotes Ferritin (mcg/L) 30–400 605 378 NA NA
T41 4817-4862 Sentence denotes D-Dimer (mcg/L) 0.00–500.0 1605 810 3497 6941
T42 4863-4909 Sentence denotes Fibrinogen (g/L) 2.00–4.00 6.10 3.84 6.06 8.47
T43 4910-4981 Sentence denotes Activated partial-thromboplastin time (sec) 28.0–40.0 39 27.3 33.6 32.2
T44 4982-5024 Sentence denotes Creatinine (mg/dL) 0.51–0.95 2.4 5 2.9 2.6
T45 5025-5067 Sentence denotes Urea nitrogen (mg/dL) 21–54 90 172 135 167
T46 5068-5119 Sentence denotes Lactate dehydrogenase (U/L) 135–214 425 282 357 265
T47 5120-5161 Sentence denotes Arterial pH 7.35–7.45 7.36 7.35 7.23 7.34
T48 5162-5231 Sentence denotes Arterial partial pressure of oxygen (mmHg) 83–108 71.8 73.3 80.8 56.1
T49 5232-5308 Sentence denotes Arterial partial pressure of carbon dioxide (mmHg) 32–45 42.4 48.1 54.1 55.4
T50 5309-5349 Sentence denotes Lactate (mmol/L) 0.5–1.6 1.1 1.1 1.6 0.8
T51 5350-5444 Sentence denotes Nasopharyngeal swab Positive-quite positive-negative Positive Positive Positive Quite positive
T52 5445-5503 Sentence denotes Ventilation mode Controlled Controlled Controlled Assisted
T53 5504-5547 Sentence denotes Fraction of inspired oxygen 0.8 0.6 0.6 0.6
T54 5548-5600 Sentence denotes Positive end-expiratory pressure (cmH2O) 15 15 13 12
T55 5601-5652 Sentence denotes Continuous renal replacement therapy NO YES YES YES
T56 5653-5737 Sentence denotes †To convert the values for urea nitrogen to millimoles per liter, multiply by 0.357.
T57 5738-5813 Sentence denotes To convert values for creatinine to micromoles per liter, multiply by 88.4.
T58 5814-5838 Sentence denotes NA denotes not available
T59 5839-6103 Sentence denotes Fig. 1 Diffusion-weighted imaging (DWI) b1000 (a) and apparent diffusion coefficient map (b) show multiple areas of restricted diffusion, involving the bilateral fronto-parietal white matter and the genu of the corpus callosum, compatible with acute ischemic foci.
T60 6104-6400 Sentence denotes Susceptibility-weighted imaging (SWI) (c) shows several millimetric hypointense areas, predominantly distributed in the thalami bilaterally, but also in the genu of the corpus callosum and in the parietal iuxtacortical white matter, consistent with microhemorrhages or alternatively microthrombi.
T61 6401-6604 Sentence denotes T1-weighted post-contrast image (d) demonstrates the lack of parenchymal or meningeal enhancement at the level of these lesions (lack of enhancement was also observed in the rest of the brain, not shown)
T62 6606-6616 Sentence denotes Discussion
T63 6617-6891 Sentence denotes We present a patient with pulmonary COVID-19 infection who developed neurological symptoms characterized by severely impaired consciousness, with multiple DWI areas of restricted diffusion and scattered SWI hypointensities at brain MRI and CSF positivity for SARS-CoV-2 RNA.
T64 6892-7048 Sentence denotes Neurological complications following COVID-19 infection are not uncommon [2], and various putative mechanisms for brain involvement have been suggested [3].
T65 7049-7220 Sentence denotes Our patient presented MRI signs of brain vascular injury, characterized by the coexistence of acute ischemic areas and scattered microbleeds or alternatively microthrombi.
T66 7221-7522 Sentence denotes The underlying mechanisms, which include direct and indirect penetration of the virus to the central nervous system and systemic cardiorespiratory complications [4], are yet to be elucidated, and a direct correlation with SARS-CoV-2 infection remains uncertain, but we tried to make some observations.
T67 7523-7729 Sentence denotes First, the multiple supratentorial ischemic lesions seen on DWI, with corpus callosum involvement, do not depict a territorial distribution, inconsistent with COVID-19-associated large vessel occlusion [5].
T68 7730-7809 Sentence denotes Instead, they might reflect diffuse local thrombosis or, less likely, embolism.
T69 7810-8082 Sentence denotes In this setting, high D-dimer values may reflect thrombus formation, but they can also act as acute-phase enhancer of the inflammatory cascade and stimulates monocyte synthesis and release of proinflammatory cytokines, which can contribute to the occurrence of stroke [6].
T70 8083-8186 Sentence denotes We cannot ascertain a specific correlation of the DWI findings with SARS-CoV2 infection in our patient.
T71 8187-8364 Sentence denotes Nevertheless, similar MRI findings of bilateral supratentorial and corpus callosum DWI lesions have been described in COVID-19 patients with similar clinical manifestations [2].
T72 8365-8442 Sentence denotes The SWI hypointense foci in our patient are also of difficult interpretation.
T73 8443-8713 Sentence denotes In fact, SWI hypointensities in the corpus callosum and in the cortical/iuxtacortical regions of COVID-19 patients with neurological impairment have been reported [7], but their pathological correlate is not univocal, as they could represent microbleeds or microthrombi.
T74 8714-8827 Sentence denotes In one pathology study, microhemorrages were detected on brain tissue at the location of SWI hypointensities [8].
T75 8828-9026 Sentence denotes Though a coagulopathic disorder has been reported in COVID-19 patients, diffuse, mostly peripherally distributed brain microbleeds can also be the expression of critical illness in ICU patients [9].
T76 9027-9254 Sentence denotes Acute necrotizing encephalopathy (ANE) [2], with similar bithalamic SWI hypointensities, has been reported in COVID-19 patients, but the MRI picture we describe is different, because no signs of edema and necrosis were evident.
T77 9255-9481 Sentence denotes Our patient did not develop any EEG abnormalities typically related to meningoencephalitis, hypoxic encephalopathy, or renal failure, such as epileptiform focal abnormalities and lateralized or generalized periodic discharges.
T78 9482-9615 Sentence denotes Accordingly, post-contrast MRI showed a lack of parenchymal and meningeal enhancement, and no MRI signs of encephalitis were present.
T79 9616-9694 Sentence denotes The meaning of SARS-CoV-2 RNA positivity in the CSF of our patient is unclear.
T80 9695-9793 Sentence denotes A direct effect of the virus, with normal proteins and no pleocytosis in the CSF, is questionable.
T81 9794-10138 Sentence denotes Viral neurotropism has been largely theorized, and virus particles have been observed to cross the capillary endothelium of the brain blood barrier (BBB) [10], but direct implication of SARS-CoV-2 in neurological manifestations is controversial, and viral RNA in the CSF of patients with neurological complications is only rarely detected [11].
T82 10139-10326 Sentence denotes In a recent study including 31 patients with neurological manifestations, none had CSF viral positivity, but many had signs of disturbance of the blood brain barrier (BBB) integrity [12].
T83 10327-10497 Sentence denotes Our patient showed signs of mild damage of the BBB as well, which might also be a possible consequence of systemic inflammation, in a patient with multiple organ failure.
T84 10498-10655 Sentence denotes Therefore, an indirect mechanism of neurovascular unit breakdown, resulting in a passage of the virus in the CSF through the damaged BBB, cannot be excluded.
T85 10656-10715 Sentence denotes Contamination or artifact could also be a possibility [11].
T86 10716-10964 Sentence denotes In COVID-19 pneumonia, the extensive microvascular damage seems to be related to a macrophage activation syndrome (MAS)-like mechanism [13], which induces a coagulopathic cascade with subsequent local microthrombosis and microbleeding in the lungs.
T87 10965-11080 Sentence denotes A similar mechanism could be responsible for central nervous system manifestations, but supporting data are scarce.
T88 11081-11245 Sentence denotes We consider this case an example of neurological manifestations possibly related to COVID-19, characterized by vascular damage predominantly involving microvessels.
T89 11246-11433 Sentence denotes The absence of pathological confirmation represents a major limitation, but similar MRI patterns [2] and recent pathological correlations seem to support a microangiopathic substrate [8].
T90 11434-11676 Sentence denotes Different mechanisms including a systemic procoagulative status and systemic and local inflammatory processes involving the endothelium, most likely via the ACE2 receptor, and eventual immune-mediated vascular injury could be considered [11].
T91 11677-11824 Sentence denotes Clinicians should be aware of the possible severe neurological complications in COVID-19 patients and of the role of MRI in their characterization.
T92 11826-11842 Sentence denotes Publisher’s note
T93 11843-11961 Sentence denotes Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
T94 11963-11984 Sentence denotes Authors’ contribution
T95 11985-12121 Sentence denotes Laura Saitta, Alexandre Molin, Luca Roccatagliata, Chiara Robba, and Nicolò Patroniti contributed to conception and design of the study.
T96 12122-12310 Sentence denotes Material preparation, data collection, and analysis were performed by Laura Saitta, Alexandre Molin, Flavio Villani, Angelo Insorsi, Luca Roccatagliata, Chiara Robba, and Nicolò Patroniti.
T97 12311-12438 Sentence denotes The first draft of the manuscript was written by Chiara Robba and all authors commented on previous versions of the manuscript.
T98 12439-12490 Sentence denotes All authors read and approved the final manuscript.
T99 12492-12525 Sentence denotes Compliance with ethical standards
T100 12527-12548 Sentence denotes Conflicts of interest
T101 12549-13222 Sentence denotes Dr. Bassetti reports personal fees from Achaogen, personal fees and other from Angelini, personal fees and other from Astellas, personal fees from Bayer, personal fees and other from Basilea, personal fees from Biomerieux, personal fees and other from Cidara, personal fees and other from Gilead, personal fees from Menarini, personal fees and other from MSD, personal fees from Nabiva, personal fees from Paratek, personal fees and other from Pfizer, personal fees from Roche, personal fees and other from Melinta, personal fees and other from Shionogi, personal fees from Tetraphase, personal fees from VenatoRx and Vifor, outside the submitted work; nothing to disclose.
T102 13223-13270 Sentence denotes All the other authors have nothing to disclose.
T103 13272-13288 Sentence denotes Ethical approval
T104 13289-13294 Sentence denotes None.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-38 Disease denotes Brain microvascular occlusive disorder MESH:D017566
3 42-50 Disease denotes COVID-19 MESH:C000657245
13 111-118 Species denotes patient Tax:9606
14 544-591 Species denotes Severe acute respiratory syndrome coronavirus-2 Tax:2697049
15 593-603 Species denotes SARS-CoV-2 Tax:2697049
16 102-110 Disease denotes COVID-19 MESH:C000657245
17 133-155 Disease denotes impaired consciousness MESH:D003244
18 265-273 Disease denotes ischemic MESH:D007511
19 497-512 Disease denotes microhemorrhage
20 689-704 Disease denotes vascular damage MESH:D000783
21 962-982 Disease denotes SARS-CoV-2 infection MESH:C000657245
28 1091-1099 Species denotes patients Tax:9606
29 1204-1211 Species denotes patient Tax:9606
30 1105-1113 Disease denotes COVID-19 MESH:C000657245
31 1224-1250 Disease denotes neurological complications MESH:D002493
32 1390-1406 Disease denotes ischemic lesions MESH:D007511
33 1467-1482 Disease denotes hypointensities
35 1582-1589 Species denotes patient Tax:9606
42 4629-4647 Gene denotes C-reactive protein Gene:1401
43 4736-4750 Gene denotes interleukin)-6 Gene:3569
44 4863-4873 Gene denotes Fibrinogen Gene:2244
45 4982-4992 Chemical denotes Creatinine MESH:D003404
46 5025-5029 Chemical denotes Urea MESH:D014508
47 5030-5038 Chemical denotes nitrogen MESH:D009584
51 5680-5684 Chemical denotes urea MESH:D014508
52 5685-5693 Chemical denotes nitrogen MESH:D009584
53 5760-5770 Chemical denotes creatinine MESH:D003404
56 6089-6097 Disease denotes ischemic MESH:D007511
57 6353-6369 Disease denotes microhemorrhages
87 1960-1973 Species denotes coronavirus 2 Tax:2697049
88 1975-1985 Species denotes SARS-CoV-2 Tax:2697049
89 2193-2200 Species denotes patient Tax:9606
90 4150-4160 Species denotes SARS-CoV-2 Tax:2697049
91 4219-4226 Species denotes patient Tax:9606
92 2477-2485 Chemical denotes steroids MESH:D013256
93 2487-2505 Chemical denotes hydroxychloroquine MESH:D006886
94 2511-2522 Chemical denotes ceftaroline MESH:C490727
95 2547-2557 Chemical denotes enoxaparin MESH:D017984
96 3816-3826 Chemical denotes gadolinium MESH:D005682
97 4003-4010 Chemical denotes glucose MESH:D005947
98 1822-1834 Disease denotes hypertension MESH:D006973
99 1839-1856 Disease denotes diabetes mellitus MESH:D003920
100 1900-1907 Disease denotes dyspnea MESH:D004417
101 1909-1914 Disease denotes fever MESH:D005334
102 1916-1923 Disease denotes fatigue MESH:D005221
103 1940-1945 Disease denotes cough MESH:D003371
104 1987-1996 Disease denotes pneumonia MESH:D011014
105 2129-2162 Disease denotes severe acute respiratory syndrome MESH:D045169
106 2167-2187 Disease denotes acute kidney failure MESH:D058186
107 2326-2331 Disease denotes CVVHD
108 2754-2759 Disease denotes CVVHD
109 2789-2795 Disease denotes anuria MESH:D001002
110 2837-2841 Disease denotes Coma MESH:D003128
111 2947-2952 Disease denotes cough MESH:D003371
112 3268-3286 Disease denotes ictal epileptiform MESH:D001037
113 3513-3526 Disease denotes ischemic foci MESH:D007511
114 4274-4292 Disease denotes bacteria infection MESH:D007239
115 4362-4374 Disease denotes septic shock MESH:D012772
123 6630-6637 Species denotes patient Tax:9606
124 6876-6886 Species denotes SARS-CoV-2 Tax:2697049
125 6643-6661 Disease denotes pulmonary COVID-19 MESH:C000657245
126 6662-6671 Disease denotes infection MESH:D007239
127 6686-6707 Disease denotes neurological symptoms MESH:D009422
128 6734-6756 Disease denotes impaired consciousness MESH:D003244
129 6820-6839 Disease denotes SWI hypointensities
137 7053-7060 Species denotes patient Tax:9606
138 6892-6918 Disease denotes Neurological complications MESH:D002493
139 6929-6937 Disease denotes COVID-19 MESH:C000657245
140 6938-6947 Disease denotes infection MESH:D007239
141 7084-7105 Disease denotes brain vascular injury MESH:D020214
142 7149-7157 Disease denotes ischemic MESH:D007511
143 7443-7463 Disease denotes SARS-CoV-2 infection MESH:C000657245
155 8151-8160 Species denotes SARS-CoV2 Tax:2697049
156 8178-8185 Species denotes patient Tax:9606
157 8314-8322 Species denotes patients Tax:9606
158 7558-7566 Disease denotes ischemic MESH:D007511
159 7682-7690 Disease denotes COVID-19 MESH:C000657245
160 7772-7782 Disease denotes thrombosis MESH:D013927
161 7800-7808 Disease denotes embolism MESH:D004617
162 7859-7867 Disease denotes thrombus MESH:D013927
163 8071-8077 Disease denotes stroke MESH:D020521
164 8161-8170 Disease denotes infection MESH:D007239
165 8305-8313 Disease denotes COVID-19 MESH:C000657245
178 8397-8404 Species denotes patient Tax:9606
179 8549-8557 Species denotes patients Tax:9606
180 8890-8898 Species denotes patients Tax:9606
181 9013-9021 Species denotes patients Tax:9606
182 8369-8389 Disease denotes SWI hypointense foci MESH:C565785
183 8452-8471 Disease denotes SWI hypointensities
184 8540-8548 Disease denotes COVID-19 MESH:C000657245
185 8563-8586 Disease denotes neurological impairment MESH:D009422
186 8803-8822 Disease denotes SWI hypointensities
187 8837-8859 Disease denotes coagulopathic disorder MESH:D030342
188 8881-8889 Disease denotes COVID-19 MESH:C000657245
189 8989-9005 Disease denotes critical illness MESH:D016638
196 9146-9154 Species denotes patients Tax:9606
197 9027-9059 Disease denotes Acute necrotizing encephalopathy OMIM:608033
198 9084-9114 Disease denotes bithalamic SWI hypointensities
199 9137-9145 Disease denotes COVID-19 MESH:C000657245
200 9222-9227 Disease denotes edema MESH:D004487
201 9232-9240 Disease denotes necrosis MESH:D009336
208 9259-9266 Species denotes patient Tax:9606
209 9326-9345 Disease denotes meningoencephalitis MESH:D008590
210 9347-9369 Disease denotes hypoxic encephalopathy MESH:D002534
211 9374-9387 Disease denotes renal failure MESH:D051437
212 9397-9429 Disease denotes epileptiform focal abnormalities MESH:D004828
213 9589-9601 Disease denotes encephalitis MESH:D004660
226 9631-9641 Species denotes SARS-CoV-2 Tax:2697049
227 9675-9682 Species denotes patient Tax:9606
228 9980-9990 Species denotes SARS-CoV-2 Tax:2697049
229 10068-10076 Species denotes patients Tax:9606
230 10170-10178 Species denotes patients Tax:9606
231 10331-10338 Species denotes patient Tax:9606
232 10461-10468 Species denotes patient Tax:9606
233 9794-9812 Disease denotes Viral neurotropism
234 10082-10108 Disease denotes neurological complications MESH:D002493
235 10266-10296 Disease denotes disturbance of the blood brain MESH:D007022
236 10442-10454 Disease denotes inflammation MESH:D007249
237 10474-10496 Disease denotes multiple organ failure MESH:D009102
241 10719-10737 Disease denotes COVID-19 pneumonia MESH:C000657245
242 10799-10829 Disease denotes macrophage activation syndrome MESH:D055501
243 10917-10932 Disease denotes microthrombosis
251 11591-11595 Gene denotes ACE2 Gene:59272
252 11766-11774 Species denotes patients Tax:9606
253 11165-11173 Disease denotes COVID-19 MESH:C000657245
254 11192-11207 Disease denotes vascular damage MESH:D000783
255 11635-11650 Disease denotes vascular injury MESH:D057772
256 11727-11753 Disease denotes neurological complications MESH:D002493
257 11757-11765 Disease denotes COVID-19 MESH:C000657245
259 12239-12253 Disease denotes Angelo Insorsi

2_test

Id Subject Object Predicate Lexical cue
33034804-32346843-75886968 7045-7046 32346843 denotes 3
33034804-32343504-75886969 7726-7727 32343504 denotes 5
33034804-31331288-75886970 8079-8080 31331288 denotes 6
33034804-32437314-75886971 8607-8608 32437314 denotes 7
33034804-32638079-75886972 8824-8825 32638079 denotes 8
33034804-28235962-75886973 9023-9024 28235962 denotes 9
33034804-32314810-75886974 9949-9951 32314810 denotes 10
33034804-32882182-75886975 10134-10136 32882182 denotes 11
33034804-32882182-75886976 10711-10713 32882182 denotes 11
33034804-32835247-75886977 10852-10854 32835247 denotes 13
33034804-32638079-75886978 11430-11431 32638079 denotes 8
33034804-32882182-75886979 11672-11674 32882182 denotes 11