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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 9-22 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T2 317-328 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T3 1017-1022 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T4 1082-1087 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T5 1185-1190 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T6 1297-1302 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 1304-1309 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 1337-1345 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T9 1431-1444 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T10 1549-1565 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T11 1561-1565 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 1839-1844 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 2070-2083 Body_part denotes Pleural fluid http://purl.org/sig/ont/fma/fma12273
T14 2185-2199 Body_part denotes nucleated cell http://purl.org/sig/ont/fma/fma67513
T15 2195-2199 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 2230-2241 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T17 2330-2343 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T18 2427-2433 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T19 2438-2443 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T20 2791-2804 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T21 3169-3174 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 3355-3368 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T23 3415-3428 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T24 3509-3522 Body_part denotes Pleural fluid http://purl.org/sig/ont/fma/fma12273
T25 3799-3809 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T26 3983-3996 Body_part denotes Pleural fluid http://purl.org/sig/ont/fma/fma12273
T27 4058-4068 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T28 4088-4101 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T29 4178-4189 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T30 4302-4305 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T31 4526-4531 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T32 4601-4617 Body_part denotes pulmonary artery http://purl.org/sig/ont/fma/fma66326
T33 4642-4647 Body_part denotes hilum http://purl.org/sig/ont/fma/fma57836
T34 4653-4658 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T35 4760-4771 Body_part denotes lymph nodes http://purl.org/sig/ont/fma/fma5034
T36 4760-4765 Body_part denotes lymph http://purl.org/sig/ont/fma/fma9671
T37 4799-4803 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 9-22 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T2 219-236 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T3 353-369 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T4 1017-1022 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T5 1082-1087 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T6 1185-1190 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T7 1297-1302 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 1304-1309 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 1431-1444 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T10 1555-1560 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 1839-1844 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 1891-1907 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T13 2070-2083 Body_part denotes Pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T14 2330-2343 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T15 2427-2433 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T16 2438-2443 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 2636-2652 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T18 2759-2775 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T19 2791-2804 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T20 3081-3098 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T21 3169-3174 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T22 3260-3276 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T23 3355-3368 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T24 3415-3428 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T25 3455-3471 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T26 3509-3522 Body_part denotes Pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T27 3679-3695 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T28 3799-3809 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T29 3799-3804 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T30 3842-3858 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T31 3961-3978 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T32 3983-3996 Body_part denotes Pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T33 4088-4101 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T34 4201-4217 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T35 4259-4276 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T36 4526-4531 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T37 4601-4617 Body_part denotes pulmonary artery http://purl.obolibrary.org/obo/UBERON_0002012
T38 4611-4617 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T39 4642-4647 Body_part denotes hilum http://purl.obolibrary.org/obo/UBERON_0004885
T40 4653-4658 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T41 4708-4724 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T42 4760-4771 Body_part denotes lymph nodes http://purl.obolibrary.org/obo/UBERON_0000029
T43 4760-4765 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 53-61 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 64-73 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 139-186 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 139-172 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 188-196 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 266-274 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 285-294 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 574-582 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 602-610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1398-1407 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 1924-1939 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T12 2268-2276 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 2365-2412 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2365-2398 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T15 2414-2422 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 2500-2535 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T17 2506-2535 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T18 2742-2750 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 2990-3009 Disease denotes viral infections in http://purl.obolibrary.org/obo/MONDO_0005108
T20 3122-3137 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T21 3128-3137 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 3610-3618 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 3621-3630 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T24 3941-3956 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T25 4291-4299 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 4417-4425 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 4436-4445 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 34-39 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T2 219-236 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T3 315-316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 353-369 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T5 393-394 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T6 395-397 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T7 443-446 http://purl.obolibrary.org/obo/CLO_0001577 denotes a 3
T8 583-587 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T9 779-780 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1017-1022 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T11 1017-1022 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T12 1017-1022 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T13 1017-1022 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T14 1082-1087 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T15 1082-1087 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T16 1185-1190 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T17 1268-1277 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T18 1297-1302 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T19 1304-1309 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T20 1323-1324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1412-1413 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1471-1472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1522-1527 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T24 1555-1560 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T25 1561-1565 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T26 1646-1648 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T27 1839-1844 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T28 1878-1879 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1891-1907 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T30 1941-1942 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T31 2195-2199 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T32 2438-2443 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T33 2438-2443 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T34 2636-2652 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T35 2719-2720 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 2759-2775 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T37 2817-2822 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38 2869-2870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2916-2917 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 3019-3020 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 3081-3098 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T42 3169-3174 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T43 3210-3212 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T44 3260-3276 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T45 3334-3335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 3382-3383 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 3455-3471 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T48 3679-3695 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T49 3730-3733 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T50 3764-3766 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T51 3764-3766 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T52 3799-3809 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
T53 3842-3858 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T54 3913-3914 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 3961-3978 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T56 3979-3982 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T57 4176-4177 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 4201-4217 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T59 4259-4276 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T60 4375-4376 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 4513-4514 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 4526-4531 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T63 4601-4617 http://purl.obolibrary.org/obo/UBERON_0002012 denotes pulmonary artery
T64 4601-4617 http://www.ebi.ac.uk/efo/EFO_0001399 denotes pulmonary artery
T65 4653-4658 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T66 4675-4676 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 4708-4724 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T68 4760-4771 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 847-853 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T2 1615-1622 Chemical denotes lactate http://purl.obolibrary.org/obo/CHEBI_24996
T3 2566-2579 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T4 2584-2602 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T5 3764-3766 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 75-83 http://purl.obolibrary.org/obo/GO_0007612 denotes Learning
T2 833-842 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T3 2990-3006 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T4 3122-3137 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-73 Sentence denotes Positive pleural fluid RT-PCR for virus detection in SARS-CoV-2 pneumonia
T2 75-105 Sentence denotes Learning points for clinicians
T3 106-247 Sentence denotes This case report highlights that severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can be detected in pleural effusions by RT-PCR.
T4 248-370 Sentence denotes In this case, the SARS-CoV-2-related pneumonia was associated with a lymphocytic, exudative, complicated pleural effusion.
T5 372-392 Sentence denotes Patient presentation
T6 393-563 Sentence denotes A 71-year-old African American man presented with a 3-week history of fever, productive cough and progressively worsening shortness of breath to the emergency department.
T7 564-762 Sentence denotes An RT-PCR COVID-19 test (Xpert Xpress SARS-CoV-2, Cepheid, Sunnyvale, CA, USA) was performed via nasopharyngeal swab on arrival to the emergency department, and the patient was found to be positive.
T8 763-925 Sentence denotes The patient had a rapidly deteriorating course with increased work of breathing and oxygen requirement and, therefore, was transferred to the intensive care unit.
T9 926-1147 Sentence denotes On presentation to the intensive care unit, his physical exam showed: temperature 102.6°F; heart rate 92 b.p.m.; respiratory rate of 30 breaths per minute; blood pressure 157/95 mmHg; and SpO2 of 95% on 2 l nasal cannula.
T10 1148-1184 Sentence denotes He was in mild respiratory distress.
T11 1185-1303 Sentence denotes Chest examination showed decreased breath sounds and dullness to percussion on the posterior aspect of the left chest.
T12 1304-1496 Sentence denotes Chest X-ray showed a left-sided, alveolar consolidation with air bronchograms consistent with pneumonia and a large left-sided pleural fluid collection concerning for a parapneumonic effusion.
T13 1497-1838 Sentence denotes The pertinent laboratory tests were as follows: (i) white blood cell count of 10.3 × 103/µl (4.0–10.5 × 103/µl); (ii) lactate dehydrogenase 363 U/l (94–200 U/l); (iii) ferritin 343.2 ng/ml (22.9–336.2 ng/ml); (iv) fibrinogen 798 mg/dl (200–393 mg/dl); (v) D-dimer 1144 ng/ml (≤500 ng/ml); and (vi) procalcitonin 0.16 ng/ml (0.00–0.50 ng/ml).
T14 1839-1940 Sentence denotes Chest computed tomography demonstrated a large left pleural effusion and mediastinal lymphadenopathy.
T15 1941-2069 Sentence denotes A therapeutic thoracentesis with ultrasound was performed with complete drainage and removal of 1200 ml of serosanguinous fluid.
T16 2070-2119 Sentence denotes Pleural fluid culture and cytology were negative.
T17 2120-2242 Sentence denotes The fluid met criteria for exudative plueral fluid and the total nucleated cell count was 993 (/mm3) with 89% lymphocytes.
T18 2243-2426 Sentence denotes An RT-PCR (Xpert® Xpress SARS-CoV-2, Cepheid, Sunnyvale, CA, USA) was performed on the pleural fluid and was positive for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
T19 2427-2467 Sentence denotes Sputum and blood cultures were negative.
T20 2468-2603 Sentence denotes He was treated supportively for acute respiratory distress syndrome with high flow nasal cannula, dexamethasone and hydroxychloroquine.
T21 2604-2680 Sentence denotes There was no reccurrence of the pleural effusion during his hospital course.
T22 2682-2692 Sentence denotes Discussion
T23 2693-2906 Sentence denotes To our knowledge, this is a novel description of COVID-19 related pleural effusion describing the pleural fluid analysis of virus detection confirmed by RT-PCR and behaving as a complicated parapneumonic effusion.
T24 2907-3018 Sentence denotes There is a paucity of data describing the pleural complications in relation to the viral infections in general.
T25 3019-3214 Sentence denotes A prior study by Cohen and Sahn,1 reported an 8% incidence of pleural effusions in patients with acute viral infection, while using lateral decubitus chest X-rays incidence is reported to be 18%.
T26 3215-3378 Sentence denotes However, the true incidence of viral related pleural effusion may be even higher if pleural ultrasonography is used as a screening tool for pleural fluid presence.
T27 3379-3508 Sentence denotes In a review by Nestor et al., 2 the pleural fluid analysis in viral related pleural effusion is variable and typically exudative.
T28 3509-3589 Sentence denotes Pleural fluid appearance can range from serous, serosanguineous, to hemorrhagic.
T29 3590-3875 Sentence denotes With respect to the SARS-CoV-2 pneumonia, review of literature reveals the prevalence of pleural effusion can be as high as 14% in patients.3–5 In one of the largest trials, Li et al.3 described intrathoracic lymph node enlargement in 67% of cases and pleural effusion in 14% of cases.
T30 3876-3982 Sentence denotes Patients with more severe cases have a higher prevalence of both lymphadenopathy and pleural effusions.3–5
T31 3983-4075 Sentence denotes Pleural fluid analysis in this case showed an exudative effusion with high lymphocyte count.
T32 4076-4277 Sentence denotes Even though pleural fluid analysis is rarely diagnostic in isolation, the differential diagnosis of a lymphocytic, exudative pleural effusion is broad and would include viral related pleural effusions.
T33 4278-4446 Sentence denotes In our case, SARS-CoV-2 RNA was detected using RT-PCR, which is consistent with the diagnosis of a complicated parapneumonic effusion from SARS-CoV-2 related pneumonia.
T34 4447-4468 Sentence denotes Conflict of interest.
T35 4469-4483 Sentence denotes None declared.
T36 4484-4493 Sentence denotes Figure 1.
T37 4495-4648 Sentence denotes An axial image of a contrasted chest computed tomography (CT) at the level of the bifurcation of the main pulmonary artery and at the level of the hilum.
T38 4649-4725 Sentence denotes The chest CT demonstrates a large, left-sided, non-complex pleural effusion.
T39 4726-4850 Sentence denotes There are pathologically enlarged lymph nodes, defined by >1 cm in short axis, located in the sub-carinal and hilar regions.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 64-73 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 219-236 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T3 285-294 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 353-369 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T5 463-468 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 470-486 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T7 515-534 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T8 1163-1183 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T9 1398-1407 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1891-1907 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T11 1912-1939 Phenotype denotes mediastinal lymphadenopathy http://purl.obolibrary.org/obo/HP_0100721
T12 2506-2526 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T13 2636-2652 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T14 2759-2775 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T15 3081-3098 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T16 3260-3276 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T17 3455-3471 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T18 3621-3630 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T19 3679-3695 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T20 3842-3858 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T21 3941-3956 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T22 3961-3978 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T23 4053-4074 Phenotype denotes high lymphocyte count http://purl.obolibrary.org/obo/HP_0100827
T24 4191-4217 Phenotype denotes exudative pleural effusion http://purl.obolibrary.org/obo/HP_0011921
T25 4259-4276 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T26 4436-4445 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T27 4708-4724 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 53-73 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
8 139-186 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
9 188-198 Species denotes SARS-CoV-2 Tax:2697049
10 266-276 Species denotes SARS-CoV-2 Tax:2697049
11 219-236 Disease denotes pleural effusions MESH:D010996
12 285-294 Disease denotes pneumonia MESH:D011014
13 353-369 Disease denotes pleural effusion MESH:D010996
15 372-379 Species denotes Patient Tax:9606
30 602-612 Species denotes SARS-CoV-2 Tax:2697049
31 729-736 Species denotes patient Tax:9606
32 767-774 Species denotes patient Tax:9606
33 847-853 Chemical denotes oxygen MESH:D010100
34 463-468 Disease denotes fever MESH:D005334
35 481-486 Disease denotes cough MESH:D003371
36 515-534 Disease denotes shortness of breath MESH:D004417
37 574-582 Disease denotes COVID-19 MESH:C000657245
38 1163-1183 Disease denotes respiratory distress MESH:D012128
39 1210-1226 Disease denotes decreased breath MESH:D004417
40 1398-1407 Disease denotes pneumonia MESH:D011014
41 1473-1495 Disease denotes parapneumonic effusion MESH:D010996
42 1891-1907 Disease denotes pleural effusion MESH:D010996
43 1924-1939 Disease denotes lymphadenopathy MESH:D008206
51 2268-2278 Species denotes SARS-CoV-2 Tax:2697049
52 2365-2412 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
53 2414-2424 Species denotes SARS-CoV-2 Tax:2697049
54 2566-2579 Chemical denotes dexamethasone MESH:D003907
55 2584-2602 Chemical denotes hydroxychloroquine MESH:D006886
56 2500-2535 Disease denotes acute respiratory distress syndrome MESH:D012128
57 2636-2652 Disease denotes pleural effusion MESH:D010996
69 3102-3110 Species denotes patients Tax:9606
70 2742-2750 Disease denotes COVID-19 MESH:C000657245
71 2759-2775 Disease denotes pleural effusion MESH:D010996
72 2883-2905 Disease denotes parapneumonic effusion MESH:D010996
73 2949-2970 Disease denotes pleural complications MESH:D010995
74 2990-3006 Disease denotes viral infections MESH:D001102
75 3081-3098 Disease denotes pleural effusions MESH:D010996
76 3122-3137 Disease denotes viral infection MESH:D001102
77 3260-3276 Disease denotes pleural effusion MESH:D010996
78 3455-3471 Disease denotes pleural effusion MESH:D010996
79 3577-3588 Disease denotes hemorrhagic MESH:D006470
87 3721-3729 Species denotes patients Tax:9606
88 3876-3884 Species denotes Patients Tax:9606
89 3610-3630 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
90 3679-3695 Disease denotes pleural effusion MESH:D010996
91 3842-3858 Disease denotes pleural effusion MESH:D010996
92 3941-3956 Disease denotes lymphadenopathy MESH:D008206
93 3961-3978 Disease denotes pleural effusions MESH:D010996
100 4291-4301 Species denotes SARS-CoV-2 Tax:2697049
101 4417-4427 Species denotes SARS-CoV-2 Tax:2697049
102 4201-4217 Disease denotes pleural effusion MESH:D010996
103 4259-4276 Disease denotes pleural effusions MESH:D010996
104 4389-4411 Disease denotes parapneumonic effusion MESH:D010996
105 4436-4445 Disease denotes pneumonia MESH:D011014
108 4601-4617 Disease denotes pulmonary artery MESH:D000071079
109 4708-4724 Disease denotes pleural effusion MESH:D010996

2_test

Id Subject Object Predicate Lexical cue
32936903-11348966-133098628 3051-3052 11348966 denotes 1
32936903-23916378-133098629 3409-3410 23916378 denotes 2
32936903-32394279-133098630 3732-3733 32394279 denotes 5
32936903-32394279-133098631 3773-3774 32394279 denotes 3
32936903-32394279-133098632 3981-3982 32394279 denotes 5