> top > docs > PMC:7545501 > annotations

PMC:7545501 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3811-3816 Body_part denotes Joint http://purl.org/sig/ont/fma/fma7490
T2 7749-7753 Body_part denotes lens http://purl.org/sig/ont/fma/fma58241
T3 9810-9814 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T4 33324-33328 Body_part denotes face http://purl.org/sig/ont/fma/fma24728

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 9810-9814 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T2 11941-11946 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T3 12094-12099 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T4 29736-29741 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T5 33324-33328 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 68-86 Disease denotes Infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T2 1085-1093 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 1624-1642 Disease denotes Infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T4 2416-2424 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 3733-3751 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T6 4156-4164 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 4214-4223 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 4225-4230 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T9 4242-4246 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T10 4443-4461 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T11 7017-7025 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 9018-9036 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T13 9143-9150 Disease denotes Malaria http://purl.obolibrary.org/obo/MONDO_0005136
T14 9311-9318 Disease denotes malaria http://purl.obolibrary.org/obo/MONDO_0005136
T15 9352-9364 Disease denotes malnutrition http://purl.obolibrary.org/obo/MONDO_0006873
T16 10360-10368 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 13363-13381 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T18 16819-16827 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 20906-20914 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 21184-21192 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 23319-23327 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 23498-23506 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 23637-23645 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 25188-25196 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 27622-27630 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 28257-28265 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 29794-29802 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 30765-30773 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 30860-30868 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 31076-31084 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 31476-31492 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481
T32 31938-31946 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 33361-33379 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T34 33840-33842 Disease denotes LM http://purl.obolibrary.org/obo/MONDO_0016569
T35 33844-33846 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T37 33856-33858 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T38 33893-33895 Disease denotes OT http://purl.obolibrary.org/obo/MONDO_0016546

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 119-124 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T2 975-980 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T3 1496-1506 http://purl.obolibrary.org/obo/UBERON_0000982 denotes articulate
T4 1496-1506 http://purl.obolibrary.org/obo/UBERON_0004905 denotes articulate
T5 1525-1532 http://purl.obolibrary.org/obo/CLO_0009609 denotes wishing
T6 1675-1680 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T7 2290-2291 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 2497-2498 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 3051-3064 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T10 3612-3613 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 3790-3804 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization’s
T12 3811-3816 http://purl.obolibrary.org/obo/UBERON_0000982 denotes Joint
T13 3811-3816 http://purl.obolibrary.org/obo/UBERON_0004905 denotes Joint
T14 5131-5141 http://purl.obolibrary.org/obo/UBERON_0000982 denotes articulate
T15 5131-5141 http://purl.obolibrary.org/obo/UBERON_0004905 denotes articulate
T16 5160-5167 http://purl.obolibrary.org/obo/CLO_0009609 denotes wishing
T17 5313-5314 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 6207-6208 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 6416-6417 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 6677-6687 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T21 7465-7466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 7749-7753 http://purl.obolibrary.org/obo/UBERON_0005389 denotes lens
T23 7875-7876 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 9365-9367 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T25 9621-9626 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T26 9645-9648 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 9670-9671 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 9810-9814 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T29 9810-9814 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T30 10015-10018 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T31 10337-10340 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T32 10351-10352 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 10501-10502 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 10669-10670 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 11173-11186 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisations
T36 11462-11463 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 11639-11640 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38 11716-11718 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T39 11917-11918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 12086-12087 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 12421-12422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 12701-12702 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 12770-12786 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations in
T44 13192-13193 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 13222-13223 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 13266-13267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 13887-13888 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 14269-14271 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T49 15365-15366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 15475-15476 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 15547-15550 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T52 15845-15846 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 16349-16350 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 18302-18303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 18336-18337 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 18452-18453 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 18591-18605 http://purl.obolibrary.org/obo/UBERON_0000982 denotes articulated in
T58 18591-18605 http://purl.obolibrary.org/obo/UBERON_0004905 denotes articulated in
T59 18641-18653 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organisation
T60 18658-18664 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes Animal
T61 18861-18864 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T62 19617-19619 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T63 19814-19818 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T64 19993-19994 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 20014-20022 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T66 20393-20394 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 20563-20564 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 20903-20905 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T69 20915-20918 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T70 21105-21115 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T71 21153-21156 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 21851-21852 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 21872-21873 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 22403-22404 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 22431-22432 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 22591-22592 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 23536-23538 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T78 23968-23969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 24041-24042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 24354-24355 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 24428-24430 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T82 24549-24550 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 24603-24605 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T84 25265-25267 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T85 25849-25856 http://purl.obolibrary.org/obo/CLO_0009609 denotes wishing
T86 26267-26268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 26470-26471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 26525-26526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 26585-26586 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 26900-26901 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 27968-27969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 29080-29085 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T93 29197-29198 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 29235-29236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 29383-29384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 29639-29643 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T97 29745-29752 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T98 29957-29958 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 31085-31088 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T100 31213-31214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 31522-31529 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T102 31555-31559 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T103 31784-31794 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T104 32340-32341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 32660-32667 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T106 32681-32688 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T107 33178-33179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 33324-33328 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T109 33655-33656 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 33840-33842 http://purl.obolibrary.org/obo/CLO_0007336 denotes LM
T111 33848-33850 http://purl.obolibrary.org/obo/CLO_0002878 denotes EC
T112 33897-33899 http://purl.obolibrary.org/obo/UBERON_0003064 denotes IM
T113 34015-34016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 34225-34229 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T115 34225-34229 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T116 34267-34271 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T117 34267-34271 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T118 34333-34334 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 6105-6110 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T3 6502-6508 Chemical denotes Action http://purl.obolibrary.org/obo/CHEBI_5133
T4 9581-9588 Chemical denotes uranium http://purl.obolibrary.org/obo/CHEBI_27214|http://purl.obolibrary.org/obo/CHEBI_49936
T6 9970-9979 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T7 9988-9997 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T8 12148-12157 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T9 12265-12274 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T10 12703-12708 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T11 13984-13987 Chemical denotes GDP http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189
T13 13993-13996 Chemical denotes GDP http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189
T15 15165-15168 Chemical denotes GDP http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189
T17 15300-15309 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T18 15318-15327 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T19 15380-15385 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T20 25713-25722 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T21 25737-25746 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T22 31585-31599 Chemical denotes pharmaceutical http://purl.obolibrary.org/obo/CHEBI_52217
T23 33840-33842 Chemical denotes LM http://purl.obolibrary.org/obo/CHEBI_73584
T24 33844-33846 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T25 33856-33858 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T27 33860-33862 Chemical denotes MP http://purl.obolibrary.org/obo/CHEBI_73612
T28 33881-33883 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T29 33885-33887 Chemical denotes SN http://purl.obolibrary.org/obo/CHEBI_74802
T30 33889-33891 Chemical denotes EG http://purl.obolibrary.org/obo/CHEBI_73505
T31 33893-33895 Chemical denotes OT http://purl.obolibrary.org/obo/CHEBI_7872
T32 33897-33899 Chemical denotes IM http://purl.obolibrary.org/obo/CHEBI_74073

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 9352-9364 Phenotype denotes malnutrition http://purl.obolibrary.org/obo/HP_0004395

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3411-3422 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-57 Sentence denotes The value proposition of the Global Health Security Index
T2 59-67 Sentence denotes Abstract
T3 68-145 Sentence denotes Infectious disease outbreaks pose major threats to human health and security.
T4 146-322 Sentence denotes Countries with robust capacities for preventing, detecting and responding to outbreaks can avert many of the social, political, economic and health system costs of such crises.
T5 323-568 Sentence denotes The Global Health Security Index (GHS Index)—the first comprehensive assessment and benchmarking of health security and related capabilities across 195 countries—recently found that no country is sufficiently prepared for epidemics or pandemics.
T6 569-783 Sentence denotes The GHS Index can help health security stakeholders identify areas of weakness, as well as opportunities to collaborate across sectors, collectively strengthen health systems and achieve shared public health goals.
T7 784-1141 Sentence denotes Some scholars have recently offered constructive critiques of the GHS Index’s approach to scoring and ranking countries; its weighting of select indicators; its emphasis on transparency; its focus on biosecurity and biosafety capacities; and divergence between select country scores and corresponding COVID-19-associated caseloads, morbidity, and mortality.
T8 1142-1610 Sentence denotes Here, we (1) describe the practical value of the GHS Index; (2) present potential use cases to help policymakers and practitioners maximise the utility of the tool; (3) discuss the importance of scoring and ranking; (4) describe the robust methodology underpinning country scores and ranks; (5) highlight the GHS Index’s emphasis on transparency and (6) articulate caveats for users wishing to use GHS Index data in health security research, policymaking and practice.
T9 1612-1623 Sentence denotes Summary box
T10 1624-1702 Sentence denotes Infectious disease outbreaks pose major threats to human health and economies.
T11 1703-1940 Sentence denotes The Global Health Security Index (GHS Index) can help decision makers identify weaknesses in systems for preventing, detecting and responding to outbreaks, while also considering relevant social, political and environmental risk factors.
T12 1941-2071 Sentence denotes Using publicly available information, the GHS Index documents where health security capacities are strong and where they are weak.
T13 2072-2181 Sentence denotes GHS Index scores and ranks are entry points into deeper analyses of health system capacities and performance.
T14 2182-2331 Sentence denotes GHS Index scores cannot and do not predict how countries respond to outbreaks, nor how many cases or deaths a country will report during an outbreak.
T15 2332-2434 Sentence denotes Future iterations of the GHS Index will incorporate lessons learnt from the ongoing COVID-19 pandemic.
T16 2436-2448 Sentence denotes Introduction
T17 2449-2698 Sentence denotes The Global Health Security Index (GHS Index) is a project by the Nuclear Threat Initiative and the Johns Hopkins University Center for Health Security, with methodological, research, and analytical support from The Economist Intelligence Unit (EIU).
T18 2699-2841 Sentence denotes An International Panel of Experts, convened by the project team, provided guidance and feedback on the development of the GHS Index framework.
T19 2842-3229 Sentence denotes Members of the International Panel of Experts provided advice over the course of the GHS Index’s development and participated in their personal capacities or in their capacities as representatives of advising organizations.” The inaugural iteration of the GHS Index was generously funded by the Open Philanthropy Project, the Bill & Melinda Gates Foundation and the Robertson Foundation.
T20 3230-3436 Sentence denotes The GHS Index is the first comprehensive assessment of health security and related capabilities across the 195 countries that make up the States Parties to the International Health Regulations (IHR (2005)).
T21 3437-3760 Sentence denotes It promotes meaningful multisectoral engagement to complement existing processes for national health security needs assessment, prioritisation, planning and financing, and is a tool for measuring country capacities to prevent, detect and respond to naturally occurring, accidental and deliberate infectious disease threats.
T22 3761-4036 Sentence denotes Building on the World Health Organization’s (WHO) Joint External Evaluation (JEE) tool, the GHS Index also assesses health system preparedness for high-consequence outbreaks, as well as socioeconomic and political risk factors that modulate vulnerability to epidemic threats.
T23 4037-4155 Sentence denotes The inaugural GHS Index, released in 2019, found that no country is sufficiently prepared for epidemics or pandemics.1
T24 4156-4568 Sentence denotes COVID-19 and other recent outbreaks—such as H1N1 pandemic influenza, Ebola, Nipah and Zika, among others—underscore the importance of measuring and monitoring country progress towards building robust capacities for preventing, detecting and responding to known, emerging and re-emerging infectious disease threats.2 These outbreaks have also underscored challenges in measuring global health security capacities.
T25 4569-4776 Sentence denotes Some analyses, for example, have recently highlighted discrepancies observed in countries like the USA and the UK, which received high GHS Index and JEE Scores, yet struggle to suppress cases of COVID-19.3 4
T26 4777-5245 Sentence denotes Here, we (1) describe the practical value of the GHS Index; (2) present potential use cases to help policymakers and practitioners maximise the utility of the tool; (3) discuss the importance of scoring and ranking; (4) describe the robust methodology underpinning country scores and ranks; (5) highlight the GHS Index’s emphasis on transparency and (6) articulate caveats for users wishing to use GHS Index data in health security research, policymaking and practice.
T27 5247-5283 Sentence denotes The practical value of the GHS Index
T28 5284-5514 Sentence denotes The GHS Index could serve as a powerful tool for measuring and motivating sustainable financing at national, regional and global levels, and its findings could help catalyse political will to fill gaps in health security capacity.
T29 5515-5849 Sentence denotes The GHS Index also measures indicators directly related to epidemic and pandemic preparedness alongside indicators of broader strengths needed to reinforce health systems, such as political, security and socioeconomic factors that could shape country risk landscapes and capacities to prevent, detect and rapidly respond to outbreaks.
T30 5850-6117 Sentence denotes Additionally, it complements ongoing efforts to build accountability for national preparedness, such as the Global Preparedness Monitoring Board, the Global Health Security Agenda (GHSA) and the World Bank Health Emergency Preparedness and Response Multi-Donor Fund.5
T31 6118-6391 Sentence denotes The GHS Index also aggregates otherwise scattered qualitative and quantitative data into a consolidated, publicly available format that facilitates comparison and monitoring, and provides extensive documentation of expert-vetted health security capacities and capabilities.
T32 6392-6655 Sentence denotes GHS Index data are thus a valuable complement to after action reviews, JEEs and workshops to develop National Action Plans for Health Security (NAPHS), as well as for drawing comparisons across geographies at the level of both individual questions and categories.
T33 6656-7026 Sentence denotes With data collection activities pending for the next iteration of the GHS Index, we hope to eventually be able to monitor national, regional and global trends in health security-strengthening efforts over time, identify when countries deprioritise investments and capacities and include new measures of pandemic preparedness informed by global experiences with COVID-19.
T34 7027-7146 Sentence denotes Globally and nationally, the GHS Index also identifies existing vulnerabilities in preparedness for biological threats.
T35 7147-7385 Sentence denotes Systematically cataloguing and monitoring these weaknesses could help inform budget allocations and spending decisions, and aid policymakers in setting priorities for health security-strengthening and health systems-strengthening efforts.
T36 7386-7496 Sentence denotes Finally, the GHS Index is valuable in its framing of global health security as a multisectoral social project.
T37 7497-7729 Sentence denotes Effective outbreak prevention, for example, depends in part on addressing root causes of disease emergence, such as those captured in GHS Index indicators examining land use changes, veterinary workforces and agricultural practices.
T38 7730-8105 Sentence denotes This multisectoral lens—which incorporates measures of country fragility and other political, economic and environmental vulnerabilities—creates a tangible starting point for One Health coordination platforms or national disaster management committees to work across sectors, engage non-traditional partners and formulate multisectoral solutions to complex health challenges.
T39 8106-8497 Sentence denotes Though processes like JEEs and NAPHS development are intended to be multisectoral, it is the health sector that most often functions as the entry point for other stakeholders and sectors that may not have explicit mandates to strengthen health security.6 The GHS Index thus recognises—and measures—the benefits of whole-of-society approaches to health security that transcend any one sector.
T40 8499-8531 Sentence denotes The value of scoring and ranking
T41 8532-8727 Sentence denotes Scoring is an intuitive method of summarising complex health system capacities across diverse contexts, monitoring longitudinal and cross-sectional trends and advocating for needed policy change.
T42 8728-8911 Sentence denotes Scoring is also used widely across many areas of global health, economic, policy and development research, as well as in established health security evaluation tools like the JEE.7–10
T43 8912-9123 Sentence denotes In general, scoring is an effective method for measuring, motivating and monitoring efforts to strengthen infectious disease management capacities across high-income, middle-income and low-income settings alike.
T44 9124-9801 Sentence denotes The Africa Leaders Malaria Alliance, for example, produces scorecards that track country progress in improving financing, capacity-building and increasing coverage of health services for malaria, neglected tropical diseases and malnutrition.11 And, between 2012 and 2016, publication of scores from the Nuclear Security Index (produced by the Nuclear Threat Initiative and developed with EIU) encouraged 10 countries to remove or dispose of highly enriched uranium within their territories.12 The Human Development Index has similarly emerged as a valuable tool for guiding decision making and monitoring policymaking at both national and subnational levels in many countries.8
T45 9802-10102 Sentence denotes In this vein, the GHS Index provides high-level composite scores for each country and offers considerable granularity and transparency in scoring justifications at the indicator and sub-indicator levels, with the aim of helping decision makers pinpoint discrete capacities that require strengthening.
T46 10103-10203 Sentence denotes Notably, GHS Index scores have been used by some countries to create new metrics of health security.
T47 10204-10390 Sentence denotes For example, Malaysia’s Ministry of Science, Technology and Innovation—in collaboration with PEMANDU Associates and the Sunway Group—has developed a Global COVID-19 Recovery Index (GCI).
T48 10391-10687 Sentence denotes GCI Scores are calculated from dynamic estimates of confirmed cases and death rates by country (which receive a weight of 70%), along with static measures of prevention capacities (GHS Index, category 1) and public health vulnerability (GHS Index, Indicator 6.5), which receive a weight of 30%.13
T49 10688-10947 Sentence denotes Like scoring, ranking is an effective way to galvanise change in low-performing countries and identify outliers, such as countries that score unexpectedly well despite limited resources, or those that rank poorly despite undertaking capacity-building efforts.
T50 10948-11637 Sentence denotes Outliers, in turn, should prompt deeper analyses of such findings.14 Morse writes, too, that ‘the ‘league table’ style of presenting rankings is…meant to be picked up by the media, and through them the public, non-government organisations, pressure groups, aid agencies and so on, and ultimately provide pressure on decision makers to bring about positive change.’15 Regardless of their overall score and rank, all countries—including high-performing states—should examine specific GHS Index indicators closely as a means of identifying critical weaknesses to address through capacity-building, funding, legislation or other approaches (see the Considerations for GHS Index users section).
T51 11639-11682 Sentence denotes A robust, practitioner-informed methodology
T52 11683-11884 Sentence denotes Data for each of the GHS Index’s 34 indicators and 85 sub-indicators were either sourced from existing repositories stewarded by reputable groups like WHO, or qualitatively assessed by EIU researchers.
T53 11885-11947 Sentence denotes Qualitative data were scored on a binary or categorical scale.
T54 11948-12053 Sentence denotes To minimise researcher bias and subjectivity in scoring, we employed binary indicators wherever possible.
T55 12054-12188 Sentence denotes Measurements were normalised on a 0–100 scale to facilitate reproducible cross-country, cross-indicator and cross-category comparison.
T56 12189-12383 Sentence denotes Detailed justifications, sources and scoring criteria are provided for each indicator in the GHS Index model, report and website to ensure both appropriate contextualisation and reproducibility.
T57 12384-12561 Sentence denotes Data review and validation comprised a year-long process involving multiple researchers vetting scores, data and justifications in stages to ensure consistency across countries.
T58 12562-13101 Sentence denotes The model’s default ‘expert’ weights were derived from extensive deliberation and input from the GHS Index International Panel of Experts, a group of 21 subject matter experts in health security representing organizations in 13 countries.16 However, recognising that no single weighting scheme can reflect every country’s priorities, we also built flexibilities into the GHS Index model: users can customise weights based on context-specific considerations, priorities or other criteria, and country scores and rankings adjust accordingly.
T59 13103-13162 Sentence denotes Selecting and harmonising metrics of global health security
T60 13163-13445 Sentence denotes The GHS Index conceptualises a health security capacity as a state’s ability or potential to carry out a discrete public health or healthcare function necessary to prevent, detect or respond to acute infectious disease threats, be they naturally occurring, accidental or deliberate.
T61 13446-13635 Sentence denotes Featured indicators in the GHS Index are intended to aid users in monitoring and measuring the investments and processes that enable states to build, sustain and implement these capacities.
T62 13636-13795 Sentence denotes The GHS Index does not, however, purport to forecast health outcomes or impacts resulting from country investments in strengthening health security capacities.
T63 13796-14146 Sentence denotes Some have asserted that the indicators selected for inclusion in the GHS Index may reflect a systematic bias towards higher-income countries.17 Given that national gross domestic product (GDP) and GDP per capita correlate only weakly with overall GHS Index scores—as evidenced by Pearson’s r values of 0.37 and 0.45, respectively—this seems unlikely.
T64 14147-14498 Sentence denotes Fidler writes, however, that global health security ‘ultimately depends on the quality of national public health systems.’18 As such, we have taken care to include indicators in the GHS Index that measure material determinants of country-level health security capacities, such as preparedness spending—which do correlate strongly with national income.
T65 14499-14697 Sentence denotes However, the GHS Index also incorporates social, political, technical and environmental determinants of health security, which do not necessarily correlate directly with national income level alone.
T66 14698-14938 Sentence denotes On measures of healthcare access (Indicator 4.3), for example, the first-ranking, second-ranking and fifth-ranking countries were Thailand (upper-middle-income), Georgia (lower-middle-income) and Nigeria (lower-middle-income), respectively.
T67 14939-15201 Sentence denotes Other factors, such as strength of laboratory systems (Indicator 2.1) and international commitments (Indicator 5.3), also correlate more strongly with overall GHS Index scores (r=0.80 and 0.76, respectively) than with overall GDP (r=0.25 and 0.23, respectively).
T68 15202-15501 Sentence denotes To further prevent potential confounding by income level, users might consider comparing overall, indicator and sub-indicator-level scores across countries within a given income group and adjusting model weights to align more closely with the specific health priorities of a given country or region.
T69 15502-15803 Sentence denotes Moreover, indicators were developed with the aim of ensuring the GHS Index’s integration with existing global health security assessment tools and frameworks such as the GHSA, the JEE and the IHR Monitoring and Evaluation Framework, as well as the NAPHS development process, as Razavi et al recommend.
T70 15804-16502 Sentence denotes However, other scholars have highlighted a need for global health security metrics that do not simply mirror global patterns of wealth distribution, and that more accurately capture health system functionality and performance rather than capacity alone.19 20 Though the GHS Index does extrapolate beyond the metrics featured in the aforementioned frameworks to encompass novel measures of risk, vulnerability and health system readiness, its primary goals remain (1) supporting and enhancing existing health security-strengthening mechanisms in a comprehensive, accessible format; and (2) motivating decision makers in all countries to make needed investments in epidemic and pandemic preparedness.
T71 16503-16792 Sentence denotes Thus, while more meaningful metrics of health security capacity are certainly warranted and merit deeper consideration by the international community, we contend that developing these metrics supersedes the original intention of the GHS Index to leverage existing, publicly available data.
T72 16793-16964 Sentence denotes However, as we learn from COVID-19, we do plan to revise the GHS Index Framework to include new, more targeted measures of pandemic readiness (see the Next steps section).
T73 16966-17046 Sentence denotes Consideration of biosecurity, biosafety, health systems and catastrophic threats
T74 17047-17140 Sentence denotes The GHS Index treats biosafety and biosecurity as vital components of global health security.
T75 17141-17232 Sentence denotes As such, the tool includes numerous indicators measuring country capacities in these areas.
T76 17233-17650 Sentence denotes Admittedly, health priorities in many low/middle-income countries (LMICs) often differ from those of their wealthier counterparts, and many LMICs may have limited capacities to prioritise biosafety and biosecurity.17 However, the health and security risks associated with dual-use research, accidental releases of pathogens and deliberate misuse of biological materials are not equitably distributed across countries.
T77 17651-17905 Sentence denotes LMICs are more likely to experience significant morbidity and mortality if these threats manifest, and unless steps are taken to monitor and strengthen their respective biosecurity and biosafety capacities, they will remain disproportionately vulnerable.
T78 17906-18109 Sentence denotes The GHS Index’s approach to biosecurity and biosafety aligns with that of the IHR (2005), which require core health system competencies that apply universally to all countries regardless of income level.
T79 18110-18478 Sentence denotes It is worth noting, too, that while category 1 of the GHS Index includes many biosecurity and biosafety indicators, it is not weighted more heavily than other categories: category 1 scores as a whole account for only 16.3% of a country’s total score, while scores for biosecurity and biosafety indicators each determine approximately 2.6% of a country’s overall score.
T80 18479-18806 Sentence denotes Including these indicators in the GHS Index also aligns with international health security norms, such as those articulated in the IHR (2005), the JEE, the World Organisation for Animal Health’s Performance of Veterinary Services Evaluations, the GHSA, the Biological Weapons Convention and the Cartagena Protocol on Biosafety.
T81 18807-19037 Sentence denotes The Africa Centres for Disease Control and Prevention has also prioritised these capacities through its continent-wide Initiative on Strengthening Biosafety and Biosecurity, which aligns with both the JEE and IHR implementation.21
T82 19038-19239 Sentence denotes The GHS Index also measures domains not explicitly captured in other health security assessment tools, such as health system readiness and preparedness for global catastrophic biological risks (GCBRs).
T83 19240-19922 Sentence denotes The Johns Hopkins Center for Health Security defines GCBRs as ‘events in which biological agents—whether naturally emerging or reemerging, deliberately created and released or laboratory engineered and escaped—could lead to sudden, extraordinary, widespread disaster beyond the collective capability of national and international governments and the private sector to control.’22 While the JEE’s biosafety and biosecurity indicators are undoubtedly vital metrics of GCBR preparedness, some health system capacities not sufficiently captured in the tool—such as abilities to test, approve and dispense new medical countermeasures—are also essential to GCBR prevention and mitigation.
T84 19923-20101 Sentence denotes The GHS Index goes above and beyond the JEE in this regard, featuring a dedicated category focusing exclusively on health system capacities required to mitigate epidemic threats.
T85 20102-20177 Sentence denotes This was the lowest-scoring category across all countries in the GHS Index:
T86 20178-20503 Sentence denotes 131 countries ranked in the lowest tier of scores, highlighting critical vulnerabilities in global capacities to care for sick patients and protect health workers during public health emergencies, including GCBRs.1 A comprehensive list of GHS Index indicators measuring GCBR preparedness is provided in the inaugural report.1
T87 20505-20546 Sentence denotes Transparency and integration with the JEE
T88 20547-20663 Sentence denotes Transparency is a cornerstone of global cooperation around health security capacity-building and emergency response.
T89 20664-21116 Sentence denotes It enables decision makers to track how global health initiatives are financed, detect and respond quickly to emergent outbreaks, coordinate responses with international partners and ensure accountability in public–private partnerships.23–27 COVID-19 has recently reaffirmed the importance of transparency in case reporting, surveillance and containment, especially as countries take steps to resume routine economic, social and educational activities.
T90 21117-21193 Sentence denotes Transparency in scientific practice has also proven crucial during COVID-19.
T91 21194-21514 Sentence denotes For example, open exchanges of clinical data, biological samples, genetic sequence data, modelling parameters and assumptions and epidemiological data support evidence-based policymaking around reopening schools and economies, forecasting demand for healthcare services and equitable allocation of scarce resources.28–31
T92 21515-21717 Sentence denotes Given the demonstrated importance of transparency in coordinating effective multilateral responses to pandemic threats, the GHS Index also prioritises publicly available evidence of relevant capacities.
T93 21718-21812 Sentence denotes Thus, countries without publicly documented evidence of these capacities receive lower scores.
T94 21813-21988 Sentence denotes The drawback of this approach is that a country possessing a given capacity without sharing corresponding evidence via official channels may receive an artificially low score.
T95 21989-22235 Sentence denotes To reduce the risk of under-scoring, we invited government officials at 195 embassies and missions to the United Nations to review our data with their respective National IHR Focal Points, course-correct our work and share additional information.
T96 22236-22350 Sentence denotes However, only 16 countries responded to these requests, for which only minimal changes to scoring were necessary.1
T97 22351-22605 Sentence denotes The GHS Index is underpinned by the principle that ‘a health threat anywhere is a health threat everywhere,’ an ethos championed by the architects of the GHSA.32 We believe that data describing national health security capacities should be a public good.
T98 22606-22734 Sentence denotes In this spirit, we anchored the GHS Index in publicly available data and made the tool itself—and all its data—freely available.
T99 22735-22932 Sentence denotes To ensure alignment with the JEE and integration of all publicly available information shared by countries, the GHS Index also draws heavily from WHO’s repository of publicly available JEE reports.
T100 22933-23144 Sentence denotes Moving forward, we strongly encourage all countries to document relevant capacities publicly—both in the interest of global cooperation and transparency, and to improve the fidelity of future monitoring efforts.
T101 23146-23211 Sentence denotes Leadership, political and security risks, and trust in government
T102 23212-23655 Sentence denotes Some experts have rightly observed an inverse relationship between overall GHS Index scores and suboptimal COVID-19 outcomes in some high-income countries—most notably, the USA, which despite having the highest overall GHS Index score, currently reports the highest number of confirmed COVID-19 cases of any country.3 30 33 34 In fact, JEE Scores for both the USA and the UK share the same inverse relationship with reported COVID-19 outcomes.
T103 23656-23727 Sentence denotes There are several possible explanations for these observed disparities.
T104 23728-24025 Sentence denotes For example, while the USA does maintain strong overall capacities for preventing, detecting and responding to epidemic and pandemic threats, ineffective federal leadership and an inability to deploy available capacities may have precluded a concerted whole-of-government response to the pandemic.
T105 24026-24233 Sentence denotes Still, despite a high overall score, some of the USA’s category-specific scores—specifically, those in category 4 (health system) and category 6 (risk environment)—do, in fact, reflect these vulnerabilities.
T106 24234-24823 Sentence denotes The USA ranks 175th out of 195 countries on healthcare access, 75th in the world for number of hospital beds and earned a score of only 60.4/100 for clinic, hospital and community care capacity.35 Similarly, the USA ranks 59th out of 195 countries on measures of socioeconomic and political resilience and received a zero on measures of public confidence in government.35 Thus, even in high-scoring countries, weak governance, poor leadership and inconsistent risk messaging could impede effective implementation and coordination of core health security functions during outbreak response.
T107 24824-24965 Sentence denotes And, as we explain further in the next section, country scores solely reflect the presence or absence of critical health security capacities.
T108 24966-25052 Sentence denotes They alone do not—and cannot—provide causal explanations for reported health outcomes.
T109 25054-25088 Sentence denotes Considerations for GHS Index users
T110 25089-25550 Sentence denotes Some researchers have turned to the GHS Index to elucidate observed between-country disparities in COVID-19-associated morbidity, mortality and case fatality estimates.4 30 33 36 However, drawing simple correlations with countries’ overall scores does not account for the fact that these scores are meant to capture capacities spanning the breadth of the health security life cycle, from outbreak prevention at the source, to early detection, to rapid response.
T111 25551-25633 Sentence denotes In other words, overall scores summarise country capacities across all categories.
T112 25634-25818 Sentence denotes However, countries with high overall scores may still have low category-level, indicator-level and sub-indicator-level scores that more strongly influence outbreak-associated outcomes.
T113 25819-26122 Sentence denotes Therefore, we encourage users wishing to analyse correlations between country scores and health outcomes to examine scores at more granular levels, adjust model weights to reflect country contexts and priorities and consider more nuanced outcomes when analysing countries’ performances during outbreaks.
T114 26123-26378 Sentence denotes For example, users might examine relationships between category 2 (detection) scores and the number of misidentified or under-reported cases in a given country, rather than examining correlations between countries’ overall scores and absolute case counts.
T115 26379-26487 Sentence denotes Furthermore, we stress that implementation of health security capacities is rarely—if ever—a linear process.
T116 26488-26620 Sentence denotes In other words, the mere presence of a given capacity does not always translate predictably into a desired health outcome or impact.
T117 26621-26775 Sentence denotes Conceptualising health systems as complex adaptive systems may offer more insight into the varied pathways by which countries achieve public health goals.
T118 26776-26938 Sentence denotes Rickles et al37 note, for example, that single events can have long-lasting effects on complex systems (‘history matters’), a phenomenon known as path dependence.
T119 26939-27477 Sentence denotes Paina and Peters further explicate this point, describing how path dependence can complicate health system evolution, particularly in the context of rapidly changing technology and when diverse stakeholders are involved—as is the case in the global health security space.38 They also highlight the futility of transposing health system innovations from countries where they have succeeded into countries with different political processes, or that have not established the institutions or systems required for said innovations to succeed.
T120 27478-27640 Sentence denotes This might further explain why countries with similar levels of capacity (as indicated by GHS Index scores) might nevertheless report divergent COVID-19 outcomes.
T121 27641-27837 Sentence denotes Composite scores and quantitative correlations are thus useful, but alone are insufficient tools for determining causal relationships between health system capacities and observed health outcomes.
T122 27838-28180 Sentence denotes The GHS Index’s transparent accounting of country capacities across various domains of health security is intended to function as a gateway to more nuanced case study analyses, in-country evaluations or after-action assessments that could help elucidate the causal mechanisms underpinning observed health outcomes during or after an outbreak.
T123 28181-28505 Sentence denotes These latter approaches are better-suited to answering why, with respect to COVID-19, high-scoring countries like the USA, the UK, Sweden and Brazil have fared significantly worse than similarly high-ranked states like Thailand, and even compared with lower-ranked states like New Zealand, Vietnam and the Republic of Korea.
T124 28506-28724 Sentence denotes Such analyses of health system dynamics across specific country contexts are beyond the scope of the GHS Index itself, which solely monitors and documents the presence or absence of critical health security capacities.
T125 28725-28968 Sentence denotes Therefore, to maximise the utility of the GHS Index, users should couple reviews of country scores with additional modes of data collection and analysis to answer questions regarding relationships between health capacities and health outcomes.
T126 28969-29134 Sentence denotes Such approaches might include key informant interviews, surveys, in-country observations, case study analyses, focus groups or participatory action research methods.
T127 29135-29216 Sentence denotes Importantly, users should also note that the GHS Index is not a forecasting tool.
T128 29217-29336 Sentence denotes Rather, it offers a cross-sectional snapshot of countries’ health security capacities as measured at one point in time.
T129 29337-29563 Sentence denotes It cannot and does not predict whether or how a country will leverage available capacities to mitigate an unfolding crisis, nor does it make assumptions about the political decision-making processes underpinning these efforts.
T130 29564-29880 Sentence denotes Furthermore, the inaugural GHS Index—which features data collected between 2018 and 2019 and was released in September 2019—does not account for many countries’ efforts to scale up testing and healthcare capacities in response to COVID-19, nor whether these efforts could be readily leveraged for future emergencies.
T131 29881-30054 Sentence denotes Finally, we reiterate that scores in all categories are intended to provide a comprehensive snapshot, based on publicly available data, of country capacities in these areas.
T132 30055-30247 Sentence denotes Scores and their accompanying justifications are meant to inform—not supplant—country efforts to undertake JEEs and prioritise health security-strengthening measures in their respective NAPHS.
T133 30249-30259 Sentence denotes Next steps
T134 30260-30425 Sentence denotes Efforts are currently underway to further refine the GHS Index based on constructive feedback from experts and lessons learnt since the original model was developed.
T135 30426-30823 Sentence denotes However, the GHS Index’s overarching finding still holds true: that no country is sufficiently prepared for epidemics or pandemics.1 The project team and International Panel of Experts fully anticipate that the GHS Index will undergo iterative refinement as stakeholders continue using the tool, identify shortcomings and learn more about COVID-19 and other diseases that may emerge in the future.
T136 30824-30969 Sentence denotes In light of the faults laid bare by COVID-19, we have already begun reexamining indicators of leadership, trust in government and political risk.
T137 30970-31230 Sentence denotes The next iteration of the GHS Index, slated to release in 2021, will also emphasise other indicators that COVID-19 has shown to be vital for pandemic response, particularly those capturing state capacity to sustain societal functioning during a major outbreak.
T138 31231-31376 Sentence denotes At present, we tentatively anticipate adding metrics of government effectiveness, as well as measures examining contact tracing and data sharing.
T139 31377-31912 Sentence denotes We also anticipate revising several existing questions and adding over 20 new questions addressing zoonotic disease spillover events, scaling of testing capacities, abilities to test for novel pathogens, non-pharmaceutical interventions, private sector participation in exercises, risk communication, mis-information and disinformation, trade and travel, health security financing, social cohesion, illicit activities carried out by non-state actors, supply chains for medical supplies, laboratory supplies and medical countermeasures.
T140 31913-32034 Sentence denotes Drawing further from the COVID-19 experience, we may also revisit weighting schemes for select categories and indicators.
T141 32035-32182 Sentence denotes In the longer term, we hope that the global health security community examines bigger-picture methodological issues around health security metrics.
T142 32183-32427 Sentence denotes Many commonly used indicators of health security capacity—including those featured in the GHS Index, JEE and IHR Monitoring and Evaluation Framework—reflect a highly technocratic conceptualisation of outbreak prevention, detection and response.
T143 32428-32573 Sentence denotes This framing likely fails to account for many social, institutional and cultural determinants of health system functioning and population health.
T144 32574-32689 Sentence denotes Furthermore, many of the indicators featured across all of these tools are investment-focused and capacity-focused.
T145 32690-32931 Sentence denotes Future monitoring and evaluation efforts might benefit from deeper engagement with outcomes of health systems-strengthening and health security-strengthening efforts, such as health service coverage, health equity and health system failures.
T146 32932-33090 Sentence denotes Subsequent iterations of the GHS Index specifically will have to contend with gaps in public data availability that disproportionately affect scores in LMICs.
T147 33091-33226 Sentence denotes Inclusion of metrics capturing the quality and effectiveness of decision-making during a crisis might strengthen the tool even further.
T148 33228-33238 Sentence denotes Conclusion
T149 33239-33316 Sentence denotes Our increasingly interconnected world is only as strong as its weakest links.
T150 33317-33678 Sentence denotes In the face of known, emerging and evolving infectious disease threats that respect no borders—and given the importance of multilateral approaches to improving health security—it is more important than ever for the global community to take stock of its strengths and vulnerabilities and capitalise on opportunities to chart paths towards a safer, securer world.
T151 33680-33696 Sentence denotes Handling editor:
T152 33697-33710 Sentence denotes Seye Abimbola
T153 33711-33748 Sentence denotes Twitter: @LuciaMullen17, @wilmotjames
T154 33749-33834 Sentence denotes Contributors: SJR conceived of the manuscript and was the primary drafter and editor.
T155 33835-33975 Sentence denotes KLW, LM, DM, EC, JB, PB, MP, CM, IN, LOG, WJ, DG, SN, EG, OT, IM and JBN provided writing assistance, reviewed drafts and offered revisions.
T156 33976-33984 Sentence denotes Funding:
T157 33985-34126 Sentence denotes The authors have not declared a specific grant for this research from any funding agency in the public, commercial or not-for-profit sectors.
T158 34127-34147 Sentence denotes Competing interests:
T159 34148-34162 Sentence denotes None declared.
T160 34163-34195 Sentence denotes Patient consent for publication:
T161 34196-34209 Sentence denotes Not required.
T162 34210-34237 Sentence denotes Provenance and peer review:
T163 34238-34281 Sentence denotes Not commissioned; externally peer reviewed.
T164 34282-34310 Sentence denotes Data availability statement:
T165 34311-34366 Sentence denotes Data are available in a public, open access repository.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
6 850-853 Gene denotes GHS Gene:7971
7 119-124 Species denotes human Tax:9606
8 68-86 Disease denotes Infectious disease MESH:D003141
9 639-647 Disease denotes weakness MESH:D018908
10 1085-1093 Disease denotes COVID-19 MESH:C000657245
11 1131-1140 Disease denotes mortality MESH:D003643
14 1675-1680 Species denotes human Tax:9606
15 1624-1642 Disease denotes Infectious disease MESH:D003141
17 2283-2289 Disease denotes deaths MESH:D003643
19 2416-2424 Disease denotes COVID-19 MESH:C000657245
21 2927-2930 Gene denotes GHS Gene:7971
23 3733-3751 Disease denotes infectious disease MESH:D003141
29 4200-4204 Species denotes H1N1 Tax:114727
30 4225-4230 Species denotes Ebola Tax:1570291
31 4156-4164 Disease denotes COVID-19 MESH:C000657245
32 4443-4461 Disease denotes infectious disease MESH:D003141
33 4764-4772 Disease denotes COVID-19 MESH:C000657245
37 7271-7274 Gene denotes aid Gene:57379
38 6891-6903 Disease denotes deprioritise
39 7017-7025 Disease denotes COVID-19 MESH:C000657245
45 9621-9626 Species denotes Human Tax:9606
46 9581-9588 Chemical denotes uranium MESH:D014501
47 9018-9036 Disease denotes infectious disease MESH:D003141
48 9143-9150 Disease denotes Malaria MESH:D008288
49 9311-9318 Disease denotes malaria MESH:D008288
52 10360-10368 Disease denotes COVID-19 MESH:C000657245
53 10463-10468 Disease denotes death MESH:D003643
56 11205-11208 Gene denotes aid Gene:57379
57 11430-11433 Gene denotes GHS Gene:7971
59 11704-11707 Gene denotes GHS Gene:7971
62 13499-13502 Gene denotes aid Gene:57379
63 13363-13381 Disease denotes infectious disease MESH:D003141
66 14512-14515 Gene denotes GHS Gene:7971
67 14860-14867 Disease denotes Georgia
69 16819-16827 Disease denotes COVID-19 MESH:C000657245
71 17713-17722 Disease denotes mortality MESH:D003643
73 20305-20313 Species denotes patients Tax:9606
76 20906-20914 Disease denotes COVID-19 MESH:C000657245
77 21184-21192 Disease denotes COVID-19 MESH:C000657245
81 23319-23327 Disease denotes COVID-19 MESH:C000657245
82 23498-23506 Disease denotes COVID-19 MESH:C000657245
83 23637-23645 Disease denotes COVID-19 MESH:C000657245
86 25188-25196 Disease denotes COVID-19 MESH:C000657245
87 25219-25228 Disease denotes mortality MESH:D003643
89 27622-27630 Disease denotes COVID-19 MESH:C000657245
91 28257-28265 Disease denotes COVID-19 MESH:C000657245
93 29794-29802 Disease denotes COVID-19 MESH:C000657245
96 30439-30442 Gene denotes GHS Gene:7971
97 30765-30773 Disease denotes COVID-19 MESH:C000657245
102 30860-30868 Disease denotes COVID-19 MESH:C000657245
103 31076-31084 Disease denotes COVID-19 MESH:C000657245
104 31476-31492 Disease denotes zoonotic disease MESH:D015047
105 31938-31946 Disease denotes COVID-19 MESH:C000657245
107 33361-33379 Disease denotes infectious disease MESH:D003141
109 33844-33846 Disease denotes DM MESH:D009223
111 34163-34170 Species denotes Patient Tax:9606

2_test

Id Subject Object Predicate Lexical cue
33033053-31315597-15160599 4470-4471 31315597 denotes 2
33033053-17308736-15160600 8909-8911 17308736 denotes 10
33033053-28745924-15160601 19617-19619 28745924 denotes 22
33033053-32197104-15160602 21512-21514 32197104 denotes 31
33033053-17933949-15160603 26789-26791 17933949 denotes 37
33033053-21821667-15160604 27210-27212 21821667 denotes 38