PMC:7544943 / 10907-11745
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T12 | 35-43 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T13 | 180-187 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T34 | 86-94 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 121-129 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T36 | 367-371 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 489-491 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T46 | 652-657 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | Field |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 244 | 447-451 | Gene | denotes | ACE2 | Gene:59272 |
| 245 | 132-136 | Gene | denotes | Mpro | Gene:8673700 |
| 246 | 86-96 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 247 | 121-131 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 248 | 367-377 | Species | denotes | SARS-Cov-2 | Tax:2697049 |
| 249 | 240-245 | Chemical | denotes | water | MESH:D014867 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T102 | 0-4 | Sentence | denotes | 2.2. |
| T103 | 6-55 | Sentence | denotes | Structure preparation of the proteins and ligands |
| T104 | 56-110 | Sentence | denotes | The crystal structures of the SARS-CoV-2 Spro (PDB ID: |
| T105 | 111-145 | Sentence | denotes | 6M0J) and SARS-CoV-2 Mpro (PDB ID: |
| T106 | 146-198 | Sentence | denotes | 6Y84) were obtained from the RCSB protein data bank. |
| T107 | 199-317 | Sentence | denotes | All the non-standard residues, including water, were removed from the PDB file using Chimera (Pettersen et al., 2004). |
| T108 | 318-383 | Sentence | denotes | The RBD domain was obtained from the PDB file of SARS-Cov-2 Spro. |
| T109 | 384-492 | Sentence | denotes | The RBD Spro residue sequence number before and after removing ACE2 is presented in Supplementary Figure S1. |
| T110 | 493-721 | Sentence | denotes | The 3D conformers of the ligands were obtained from the PubChem and optimized using the steepest descent and conjugate gradient steps with General Amber Force Field (GAFF) (Wang et al., 2004) in Chimera (Pettersen et al., 2004). |
| T111 | 722-731 | Sentence | denotes | Figure 1. |
| T112 | 733-838 | Sentence | denotes | Predicted lipophilicity (Log P) values of the spice molecules obtained from different calculation models. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32938313-15264254-56197377 | 311-315 | 15264254 | denotes | 2004 |
| 32938313-15116359-56197378 | 679-683 | 15116359 | denotes | 2004 |
| 32938313-15264254-56197379 | 715-719 | 15264254 | denotes | 2004 |