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PMC:7543471 / 6340-9263 JSONTXT

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LitCovid-PD-FMA-UBERON

Id	Subject	Object	Predicate	Lexical cue	fma_id
T6	310-331	Body_part	denotes	left side of the neck	http://purl.org/sig/ont/fma/fma74796
T7	1158-1162	Body_part	denotes	neck	http://purl.org/sig/ont/fma/fma7155
T8	1220-1241	Body_part	denotes	internal jugular vein	http://purl.org/sig/ont/fma/fma4724
T9	1294-1316	Body_part	denotes	right side of the neck	http://purl.org/sig/ont/fma/fma74795
T10	1355-1367	Body_part	denotes	right atrium	http://purl.org/sig/ont/fma/fma7096
T11	1461-1468	Body_part	denotes	heparin	http://purl.org/sig/ont/fma/fma82839
T12	1546-1558	Body_part	denotes	body surface	http://purl.org/sig/ont/fma/fma61695
T13	2553-2560	Body_part	denotes	sutures	http://purl.org/sig/ont/fma/fma7493

LitCovid-PD-UBERON

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T10	327-331	Body_part	denotes	neck	http://purl.obolibrary.org/obo/UBERON_0000974
T11	1055-1061	Body_part	denotes	vessel	http://purl.obolibrary.org/obo/UBERON_0000055
T12	1158-1162	Body_part	denotes	neck	http://purl.obolibrary.org/obo/UBERON_0000974
T13	1220-1241	Body_part	denotes	internal jugular vein	http://purl.obolibrary.org/obo/UBERON_0001586
T14	1229-1241	Body_part	denotes	jugular vein	http://purl.obolibrary.org/obo/UBERON_0004711
T15	1237-1241	Body_part	denotes	vein	http://purl.obolibrary.org/obo/UBERON_0001638
T16	1312-1316	Body_part	denotes	neck	http://purl.obolibrary.org/obo/UBERON_0000974
T17	2553-2560	Body_part	denotes	sutures	http://purl.obolibrary.org/obo/UBERON_4200215

LitCovid-PD-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T21	1810-1818	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T22	1983-1986	Disease	denotes	HLS	http://purl.obolibrary.org/obo/MONDO_0006037
T23	2035-2038	Disease	denotes	PVL	http://purl.obolibrary.org/obo/MONDO_0015742
T24	2276-2279	Disease	denotes	HLS	http://purl.obolibrary.org/obo/MONDO_0006037
T25	2303-2306	Disease	denotes	PAS	http://purl.obolibrary.org/obo/MONDO_0004277

LitCovid-PD-CLO

Id	Subject	Object	Predicate	Lexical cue
T50	151-152	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T51	202-203	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T52	277-278	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T53	327-331	http://www.ebi.ac.uk/efo/EFO_0000967	denotes	neck
T54	377-378	http://purl.obolibrary.org/obo/CLO_0001020	denotes	A
T55	392-404	http://purl.obolibrary.org/obo/OBI_0000245	denotes	Organization
T56	536-548	http://purl.obolibrary.org/obo/OBI_0000245	denotes	Organization
T57	1055-1061	http://purl.obolibrary.org/obo/UBERON_0000055	denotes	vessel
T58	1158-1162	http://www.ebi.ac.uk/efo/EFO_0000967	denotes	neck
T59	1237-1241	http://purl.obolibrary.org/obo/UBERON_0001638	denotes	vein
T60	1237-1241	http://www.ebi.ac.uk/efo/EFO_0000816	denotes	vein
T61	1312-1316	http://www.ebi.ac.uk/efo/EFO_0000967	denotes	neck
T62	1623-1624	http://purl.obolibrary.org/obo/CLO_0001020	denotes	A
T63	1691-1692	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T64	2088-2090	http://purl.obolibrary.org/obo/CLO_0003384	denotes	Fr
T65	2096-2097	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T66	2126-2129	http://purl.obolibrary.org/obo/CLO_0001007	denotes	380
T67	2280-2288	http://purl.obolibrary.org/obo/UBERON_0001637	denotes	arterial
T68	2280-2288	http://www.ebi.ac.uk/efo/EFO_0000814	denotes	arterial
T69	2349-2351	http://purl.obolibrary.org/obo/CLO_0003384	denotes	Fr
T70	2357-2358	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T71	2398-2401	http://purl.obolibrary.org/obo/CLO_0051582	denotes	has
T72	2420-2421	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T73	2493-2499	http://purl.obolibrary.org/obo/UBERON_0000025	denotes	tubing

LitCovid-PD-CHEBI

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T4	1461-1468	Chemical	denotes	heparin	http://purl.obolibrary.org/obo/CHEBI_28304
T5	2088-2090	Chemical	denotes	Fr	http://purl.obolibrary.org/obo/CHEBI_33323
T6	2303-2306	Chemical	denotes	PAS	http://purl.obolibrary.org/obo/CHEBI_27565
T7	2349-2351	Chemical	denotes	Fr	http://purl.obolibrary.org/obo/CHEBI_33323

LitCovid-PubTator

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
84	682-689	Species	denotes	patient	Tax:9606
85	877-884	Species	denotes	patient	Tax:9606
86	915-922	Species	denotes	patient	Tax:9606
87	1796-1804	Species	denotes	patients	Tax:9606
88	1461-1468	Chemical	denotes	heparin	MESH:D006493
89	2303-2311	Chemical	denotes	PAS-1915
90	1720-1746	Disease	denotes	bleeding versus thrombotic	MESH:D013927
91	1810-1818	Disease	denotes	COVID-19	MESH:C000657245

LitCovid-sentences

Id	Subject	Object	Predicate	Lexical cue
T65	0-139	Sentence	denotes	When the decision is made to proceed with ECMO, our preference is that cannulation be performed in the referring hospital’s operating room.
T66	140-376	Sentence	denotes	We require a dedicated anaesthetist, theatre practitioner and a radiographer with an image intensifier from the referring team to insert a new central venous line on the left side of the neck and facilitate ECMO insertion, respectively.
T67	377-466	Sentence	denotes	A World Health Organization surgical safety checklist was completed prior to cannulation.
T68	467-670	Sentence	denotes	We observed the recommendations from the Extracorporeal Life Support Organization (that veno-venous ECMO (VV-ECMO) be initiated by staff personal protective equipment with full contact precautions) [10].
T69	671-793	Sentence	denotes	Before the patient arrived in the operating room, the ECMO retrieval team had scrubbed and donned the appropriate apparel.
T70	794-901	Sentence	denotes	The equipment was ready so the team could proceed immediately (Fig. 1) in case the patient became unstable.
T71	902-1016	Sentence	denotes	Changing the patient from the prone to the supine position for cannulation was performed onto the operating table.
T72	1017-1369	Sentence	denotes	Under aseptic conditions, the femoral vessel was punctured percutaneously under directed ultrasound guidance and the old central line in the neck was rewired for insertion of the return cannula into the internal jugular vein (our preference is to insert return cannulas on the right side of the neck because of the straighter path to the right atrium).
T73	1370-1564	Sentence	denotes	Once the positions of both guide wires were confirmed with the image intensifier, systemic heparin was administered, initially 2500 IU and another 2500 IU if required based on body surface area.
T74	1565-1622	Sentence	denotes	We followed our institutional anticoagulation guidelines.
T75	1623-1824	Sentence	denotes	A higher than usual degree of anticoagulation may be indicated, and a case-by-case assessment of bleeding versus thrombotic risks is recommended pending further evidence in patients with COVID-19 [10].
T76	1825-1916	Sentence	denotes	The puncture site was then dilated sequentially to the appropriate diameter of the cannula.
T77	1917-2394	Sentence	denotes	For drainage, we used the femoral venous Maquet (BIOLINE coating) HLS cannula® (Getinge AB, Gothenburg, Sweden), type PVL-2555 with an outer diameter of 7.6–8.3 mm (23–25 Fr) and a maximum insertion length of 380–550 mm; it connects to standard 9.5 mm (3/8 inch) diameter tubing.The return internal jugular venous cannula used is the Maquet (BIOLINE coating) HLS arterial cannula® type PAS-1915 with an outer diameter of 6.3 mm (19 Fr) and a maximum insertion length of 150 mm.
T78	2395-2500	Sentence	denotes	It has 2 side holes with a perforation length of 10 mm and connects to standard 9.5 mm (3/8 inch) tubing.
T79	2501-2631	Sentence	denotes	The cannulae were fixed securely in position with 3 sutures and Hollister® dressings (Hollister Limited, Winnersh, Wokingham, UK).
T80	2632-2923	Sentence	denotes	We used Thoratec Levitronix® (Levitronix GmbH, Zurich, Switzerland) consoles and ranges of oxygenators depending on availability (Paragon® Chalice Medical Limited, Worksop, Nottinghamshire, UK; Eurosets® Eurosets S.R.L, Medolla, Italy and Medos hilite®, Inspiration Healthcare, Crawley, UK).