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PMC:7543471 JSONTXT

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TEST0

Id Subject Object Predicate Lexical cue
32964930-168-173-6645 2358-2359 ["31950516"] denotes 1
32964930-105-110-6646 3127-3128 ["32203711"] denotes 6
32964930-91-96-6647 3404-3405 ["3202424"] denotes 7
32964930-236-241-6648 3657-3658 ["16129869"] denotes 8
32964930-237-242-6649 3756-3757 ["24693864"] denotes 9
32964930-150-155-6650 5880-5881 ["24693864"] denotes 9
32964930-120-126-6651 9455-9457 ["31221511"] denotes 11
32964930-213-219-6652 11173-11175 ["32105637"] denotes 12
32964930-75-81-6653 15155-15157 ["32250751"] denotes 13
32964930-117-123-6654 15277-15279 ["32291274"] denotes 14
32964930-48-54-6655 15438-15440 ["32267963"] denotes 15
32964930-185-190-6656 16179-16180 ["21976615"] denotes 4
32964930-148-154-6657 16777-16779 ["32267963"] denotes 15
32964930-213-218-6658 19557-19558 ["21976615"] denotes 4
32964930-216-222-6659 19560-19562 ["19762075"] denotes 16
32964930-196-202-6660 19837-19839 ["19762075"] denotes 16

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1422-1434 Body_part denotes femoral vein http://purl.org/sig/ont/fma/fma21185
T2 1453-1480 Body_part denotes right internal jugular vein http://purl.org/sig/ont/fma/fma4754
T3 3385-3389 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T4 6163-6168 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 6196-6201 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T6 6650-6671 Body_part denotes left side of the neck http://purl.org/sig/ont/fma/fma74796
T7 7498-7502 Body_part denotes neck http://purl.org/sig/ont/fma/fma7155
T8 7560-7581 Body_part denotes internal jugular vein http://purl.org/sig/ont/fma/fma4724
T9 7634-7656 Body_part denotes right side of the neck http://purl.org/sig/ont/fma/fma74795
T10 7695-7707 Body_part denotes right atrium http://purl.org/sig/ont/fma/fma7096
T11 7801-7808 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T12 7886-7898 Body_part denotes body surface http://purl.org/sig/ont/fma/fma61695
T13 8893-8900 Body_part denotes sutures http://purl.org/sig/ont/fma/fma7493
T14 10472-10477 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T15 10778-10782 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T16 11360-11373 Body_part denotes femoral veins http://purl.org/sig/ont/fma/fma21185
T17 11368-11373 Body_part denotes veins http://purl.org/sig/ont/fma/fma63814
T18 11434-11455 Body_part denotes internal jugular vein http://purl.org/sig/ont/fma/fma4724
T19 13578-13582 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T20 13839-13846 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T21 13872-13877 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T22 14120-14124 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T23 14290-14294 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T24 14363-14368 Body_part denotes groin http://purl.org/sig/ont/fma/fma24040
T25 14503-14507 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T26 18107-18119 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1422-1434 Body_part denotes femoral vein http://purl.obolibrary.org/obo/UBERON_0001361
T2 1430-1434 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T3 1459-1480 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T4 1468-1480 Body_part denotes jugular vein http://purl.obolibrary.org/obo/UBERON_0004711
T5 1476-1480 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T6 3385-3389 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T7 3650-3655 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T8 6163-6168 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 6196-6201 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 6667-6671 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T11 7395-7401 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T12 7498-7502 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T13 7560-7581 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T14 7569-7581 Body_part denotes jugular vein http://purl.obolibrary.org/obo/UBERON_0004711
T15 7577-7581 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T16 7652-7656 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T17 8893-8900 Body_part denotes sutures http://purl.obolibrary.org/obo/UBERON_4200215
T18 10472-10477 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T19 11360-11373 Body_part denotes femoral veins http://purl.obolibrary.org/obo/UBERON_0001361
T20 11434-11455 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T21 11443-11455 Body_part denotes jugular vein http://purl.obolibrary.org/obo/UBERON_0004711
T22 11451-11455 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T23 13872-13877 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T24 18062-18069 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T25 18107-18119 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T26 18114-18119 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T27 21095-21100 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 74-121 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T2 74-107 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T3 123-131 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 266-290 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T5 656-680 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T6 2083-2107 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T7 2109-2117 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 2206-2253 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T9 2206-2239 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T10 2554-2573 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T11 3080-3099 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T12 3207-3226 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T13 3277-3301 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T14 3363-3382 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T15 3390-3396 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T16 3871-3889 Disease denotes multiorgan failure http://purl.obolibrary.org/obo/MONDO_0043726
T17 3920-3944 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T18 4005-4013 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 4376-4384 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 4977-4985 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 8150-8158 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 8323-8326 Disease denotes HLS http://purl.obolibrary.org/obo/MONDO_0006037
T23 8375-8378 Disease denotes PVL http://purl.obolibrary.org/obo/MONDO_0015742
T24 8616-8619 Disease denotes HLS http://purl.obolibrary.org/obo/MONDO_0006037
T25 8643-8646 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T26 9618-9626 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 9800-9808 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 10463-10485 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T29 11035-11082 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T30 11035-11068 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T31 12076-12080 Disease denotes PCOS http://purl.obolibrary.org/obo/MONDO_0008487
T32 12191-12193 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T34 12195-12198 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T35 12266-12268 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T37 12336-12339 Disease denotes SCT http://purl.obolibrary.org/obo/MONDO_0010094
T38 12341-12344 Disease denotes SLE http://purl.obolibrary.org/obo/MONDO_0007915
T39 12446-12448 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T41 12483-12485 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T43 12487-12490 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T44 12595-12597 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T46 12794-12796 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T48 12826-12829 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T49 12868-12871 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T50 12873-12879 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T51 12949-12952 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T52 12958-12964 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T53 12989-12996 Disease denotes empyema http://purl.obolibrary.org/obo/MONDO_0005242|http://purl.obolibrary.org/obo/MONDO_0018667
T55 13173-13175 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T57 13177-13180 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T58 13182-13188 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T59 13284-13287 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T60 13363-13365 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T62 13552-13571 Disease denotes acute cor pulmonale http://purl.obolibrary.org/obo/MONDO_0004598
T63 13558-13571 Disease denotes cor pulmonale http://purl.obolibrary.org/obo/MONDO_0004596
T64 13595-13603 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 13605-13629 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T66 13631-13633 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T68 13635-13652 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T69 13659-13670 Disease denotes hepatitis B http://purl.obolibrary.org/obo/MONDO_0005344
T70 13659-13668 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T71 13671-13686 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T72 13677-13686 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T73 13715-13718 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T74 13720-13732 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T75 13738-13752 Disease denotes hypothyroidism http://purl.obolibrary.org/obo/MONDO_0005420
T76 13863-13885 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T77 13935-13939 Disease denotes PCOS http://purl.obolibrary.org/obo/MONDO_0008487
T78 13974-13992 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T79 13998-14016 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T80 14023-14035 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T81 14095-14106 Disease denotes sarcoidosis http://purl.obolibrary.org/obo/MONDO_0019338
T82 14108-14111 Disease denotes SCT http://purl.obolibrary.org/obo/MONDO_0010094
T83 14132-14135 Disease denotes SLE http://purl.obolibrary.org/obo/MONDO_0007915
T84 14137-14165 Disease denotes systemic lupus erythematosus http://purl.obolibrary.org/obo/MONDO_0007915
T85 14146-14165 Disease denotes lupus erythematosus http://purl.obolibrary.org/obo/MONDO_0004670
T86 14994-15002 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 15380-15388 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T88 15542-15550 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 15744-15763 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T90 16107-16126 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T91 16146-16160 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T92 16151-16160 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T93 16269-16278 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T94 16301-16309 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 16532-16540 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 16960-16974 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T97 16965-16974 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T98 17128-17136 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 19181-19189 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 19364-19372 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 19530-19545 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T102 19536-19545 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T103 19745-19753 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T104 21725-21733 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 24-32 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T2 255-265 http://purl.obolibrary.org/obo/BFO_0000030 denotes OBJECTIVES
T3 294-295 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 324-327 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 501-509 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T6 532-533 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 886-894 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T8 1011-1012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1226-1228 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T10 1430-1434 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T11 1430-1434 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T12 1476-1480 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T13 1476-1480 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T14 1589-1590 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2122-2123 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2148-2149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2178-2179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2252-2256 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2, a
T19 2280-2283 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 2406-2407 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2440-2446 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T22 2477-2480 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 2481-2482 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 2857-2865 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T25 2888-2889 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3030-3033 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 3125-3128 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3–6
T28 3385-3389 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T29 3385-3389 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T30 3501-3507 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T31 3708-3716 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T32 3890-3891 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 3976-3984 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T34 4144-4145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4170-4178 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T36 4198-4199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4621-4622 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 4783-4784 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4821-4827 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T40 5141-5142 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 5183-5184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 5477-5478 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 5589-5598 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T44 5766-5767 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 5835-5836 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 6163-6168 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T47 6196-6201 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T48 6196-6201 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T49 6202-6207 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T50 6491-6492 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 6542-6543 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 6617-6618 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 6667-6671 http://www.ebi.ac.uk/efo/EFO_0000967 denotes neck
T54 6717-6718 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 6732-6744 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T56 6876-6888 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T57 7395-7401 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T58 7498-7502 http://www.ebi.ac.uk/efo/EFO_0000967 denotes neck
T59 7577-7581 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T60 7577-7581 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T61 7652-7656 http://www.ebi.ac.uk/efo/EFO_0000967 denotes neck
T62 7963-7964 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T63 8031-8032 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 8428-8430 http://purl.obolibrary.org/obo/CLO_0003384 denotes Fr
T65 8436-8437 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 8466-8469 http://purl.obolibrary.org/obo/CLO_0001007 denotes 380
T67 8620-8628 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T68 8620-8628 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T69 8689-8691 http://purl.obolibrary.org/obo/CLO_0003384 denotes Fr
T70 8697-8698 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 8738-8741 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 8760-8761 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 8833-8839 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubing
T74 9290-9298 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T75 9368-9369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 9455-9457 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T77 9523-9524 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T78 9960-9962 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T79 10472-10477 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T80 10947-10951 http://purl.obolibrary.org/obo/CLO_0003797 denotes h; P
T81 10947-10951 http://purl.obolibrary.org/obo/PR_000008725 denotes h; P
T82 10947-10951 http://purl.obolibrary.org/obo/UBERON_0000007 denotes h; P
T83 11018-11022 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T84 11183-11184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 11368-11376 http://purl.obolibrary.org/obo/UBERON_0001638 denotes veins in
T86 11368-11376 http://www.ebi.ac.uk/efo/EFO_0000816 denotes veins in
T87 11451-11455 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T88 11451-11455 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T89 11524-11532 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T90 11757-11765 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T91 12072-12074 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T92 12102-12104 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T93 12253-12255 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T94 12266-12271 http://purl.obolibrary.org/obo/CLO_0053172 denotes DM S
T95 12289-12291 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T96 12336-12339 http://purl.obolibrary.org/obo/CLO_0001024 denotes SCT
T97 12516-12518 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T98 12595-12600 http://purl.obolibrary.org/obo/CLO_0053172 denotes DM S
T99 12794-12799 http://purl.obolibrary.org/obo/CLO_0053172 denotes DM S
T100 12913-12915 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T101 12917-12922 http://purl.obolibrary.org/obo/CLO_0051568 denotes Sa S
T102 13238-13240 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T103 13313-13315 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T104 13363-13368 http://purl.obolibrary.org/obo/CLO_0053172 denotes DM S
T105 13386-13387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 13418-13419 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T107 13431-13433 http://purl.obolibrary.org/obo/CLO_0009141 denotes St
T108 13431-13433 http://purl.obolibrary.org/obo/CLO_0050980 denotes St
T109 13669-13670 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T110 13671-13676 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T111 13734-13736 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T112 13872-13877 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T113 14108-14111 http://purl.obolibrary.org/obo/CLO_0001024 denotes SCT
T114 14120-14124 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T115 14215-14217 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T116 14249-14253 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T117 14249-14253 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T118 14257-14263 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T119 14350-14351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 14363-14368 http://www.ebi.ac.uk/efo/EFO_0001397 denotes groin
T121 14475-14476 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 14497-14507 http://purl.obolibrary.org/obo/UBERON_0013702 denotes whole-body
T123 14648-14649 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 15012-15015 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T125 15016-15022 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T126 15085-15090 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T127 15110-15113 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T128 15114-15115 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 15245-15246 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 15481-15482 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 15627-15630 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T132 15666-15667 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 16718-16726 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T134 16860-16861 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 16928-16929 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 17157-17158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 18062-18069 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T138 18107-18113 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T139 18114-18119 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T140 18183-18189 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T141 18261-18269 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T142 18923-18932 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T143 19081-19093 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T144 19576-19577 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T145 19726-19727 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 19791-19796 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T147 20040-20048 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T148 20310-20311 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 20489-20490 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 20762-20763 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 20996-21008 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T152 21120-21121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T153 21379-21389 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T154 21584-21587 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T155 22129-22132 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T156 22162-22165 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T157 22238-22239 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 22270-22271 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T159 22306-22307 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T160 22404-22405 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 22911-22912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 23262-23265 http://purl.obolibrary.org/obo/CLO_0002697 denotes Dan
T163 23313-23320 http://purl.obolibrary.org/obo/CLO_0002743 denotes Dempsey
T164 24092-24093 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T165 24185-24191 http://purl.obolibrary.org/obo/NCBITaxon_8976 denotes Fowles
T166 24812-24816 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T167 24812-24816 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2038-2049 Chemical denotes anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867
T2 4630-4641 Chemical denotes anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867
T3 4713-4724 Chemical denotes anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867
T4 7801-7808 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T5 8428-8430 Chemical denotes Fr http://purl.obolibrary.org/obo/CHEBI_33323
T6 8643-8646 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T7 8689-8691 Chemical denotes Fr http://purl.obolibrary.org/obo/CHEBI_33323
T8 10929-10934 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T9 11957-11959 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T12 11986-11988 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T13 11990-11992 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 12023-12025 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T17 12056-12058 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T20 12132-12134 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T23 12170-12172 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T26 12174-12177 Chemical denotes ACP http://purl.obolibrary.org/obo/CHEBI_13534|http://purl.obolibrary.org/obo/CHEBI_18359
T28 12191-12193 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T29 12216-12218 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T32 12266-12268 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T33 12286-12288 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T36 12391-12393 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T39 12446-12448 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T40 12467-12469 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T43 12483-12485 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T44 12508-12510 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T47 12546-12548 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T50 12579-12581 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T53 12595-12597 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T54 12741-12743 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T57 12774-12776 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T60 12778-12780 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T62 12794-12796 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T63 12847-12849 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T65 12897-12899 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T67 13157-13159 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T68 13173-13175 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T69 13235-13237 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T72 13268-13270 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T74 13305-13307 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T77 13363-13365 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T78 13547-13550 Chemical denotes ACP http://purl.obolibrary.org/obo/CHEBI_13534|http://purl.obolibrary.org/obo/CHEBI_18359
T80 13631-13633 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T81 13839-13846 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T83 13887-13889 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T84 13970-13972 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T87 13994-13996 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T89 14249-14253 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T90 17245-17256 Chemical denotes anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867
T91 20559-20570 Chemical denotes anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867
T92 23168-23173 Chemical denotes Ester http://purl.obolibrary.org/obo/CHEBI_35701
T93 23513-23516 Chemical denotes Eve http://purl.obolibrary.org/obo/CHEBI_132237

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 74-121 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
3 123-133 Species denotes SARS-CoV-2 Tax:2697049
9 586-594 Species denotes patients Tax:9606
10 266-290 Disease denotes Coronavirus disease 2019 MESH:C000657245
11 388-397 Disease denotes mortality MESH:D003643
12 419-444 Disease denotes respiratory complications MESH:D012131
13 656-680 Disease denotes coronavirus disease 2019 MESH:C000657245
16 980-988 Species denotes patients Tax:9606
17 1146-1154 Species denotes patients Tax:9606
34 2206-2253 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
35 2257-2274 Species denotes novel coronavirus Tax:2697049
36 2440-2446 Species denotes humans Tax:9606
37 2940-2948 Species denotes patients Tax:9606
38 3059-3067 Species denotes patients Tax:9606
39 3110-3114 Species denotes H1N1 Tax:114727
40 3188-3196 Species denotes patients Tax:9606
41 2083-2107 Disease denotes Coronavirus disease 2019 MESH:C000657245
42 2109-2117 Disease denotes COVID-19 MESH:C000657245
43 2408-2416 Disease denotes zoonotic MESH:D015047
44 2554-2573 Disease denotes respiratory failure MESH:D012131
45 2602-2611 Disease denotes mortality MESH:D003643
46 2633-2658 Disease denotes respiratory complications MESH:D012131
47 2827-2836 Disease denotes mortality MESH:D003643
48 3080-3099 Disease denotes respiratory failure MESH:D012131
49 3207-3226 Disease denotes respiratory failure MESH:D012131
51 3363-3396 Disease denotes respiratory failure • Lung injury MESH:D012131
53 3277-3301 Disease denotes coronavirus disease 2019 MESH:C000657245
55 3920-3944 Disease denotes coronavirus disease 2019 MESH:C000657245
60 4067-4075 Species denotes patients Tax:9606
61 4005-4013 Disease denotes COVID-19 MESH:C000657245
62 4376-4384 Disease denotes COVID-19 MESH:C000657245
63 4977-4985 Disease denotes COVID-19 MESH:C000657245
67 5824-5831 Species denotes patient Tax:9606
68 5921-5928 Species denotes patient Tax:9606
69 6023-6030 Species denotes patient Tax:9606
73 6066-6073 Species denotes patient Tax:9606
74 6126-6133 Species denotes patient Tax:9606
75 6254-6261 Species denotes patient Tax:9606
84 7022-7029 Species denotes patient Tax:9606
85 7217-7224 Species denotes patient Tax:9606
86 7255-7262 Species denotes patient Tax:9606
87 8136-8144 Species denotes patients Tax:9606
88 7801-7808 Chemical denotes heparin MESH:D006493
89 8643-8651 Chemical denotes PAS-1915
90 8060-8086 Disease denotes bleeding versus thrombotic MESH:D013927
91 8150-8158 Disease denotes COVID-19 MESH:C000657245
97 9339-9347 Species denotes patients Tax:9606
98 9573-9580 Species denotes patient Tax:9606
99 9604-9612 Species denotes patients Tax:9606
100 9659-9667 Species denotes patients Tax:9606
101 9618-9626 Disease denotes COVID-19 MESH:C000657245
113 9950-9958 Species denotes patients Tax:9606
114 10046-10054 Species denotes patients Tax:9606
115 10115-10123 Species denotes patients Tax:9606
116 10307-10315 Species denotes patients Tax:9606
117 10499-10507 Species denotes patients Tax:9606
118 10989-10997 Species denotes patients Tax:9606
119 11035-11082 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
120 11229-11237 Species denotes patients Tax:9606
121 9800-9808 Disease denotes COVID-19 MESH:C000657245
122 10455-10459 Disease denotes died MESH:D003643
123 10463-10485 Disease denotes multiple organ failure MESH:D009102
146 11837-11842 Disease denotes COVID MESH:C000657245
147 12076-12080 Disease denotes PCOS MESH:D011085
148 12098-12101 Disease denotes ICH MESH:D002543
149 12191-12193 Disease denotes DM MESH:D009223
150 12266-12268 Disease denotes DM MESH:D009223
151 12341-12344 Disease denotes SLE MESH:D008180
152 12424-12427 Disease denotes ICH MESH:D002543
153 12446-12448 Disease denotes DM MESH:D009223
154 12483-12485 Disease denotes DM MESH:D009223
155 12512-12515 Disease denotes ICH MESH:D002543
156 12595-12597 Disease denotes DM MESH:D009223
157 12610-12624 Disease denotes RPH STE 49 F OMIM:102510
158 12794-12796 Disease denotes DM MESH:D009223
159 12873-12879 Disease denotes asthma MESH:D001249
160 12958-12967 Disease denotes asthma S MESH:D001249
161 12977-13002 Disease denotes RPH Fungal empyema 49 F MESH:D004653
162 13010-13013 Disease denotes IGT
163 13119-13127 Disease denotes RPH ICH MESH:D002543
164 13173-13175 Disease denotes DM MESH:D009223
165 13182-13191 Disease denotes asthma S MESH:D001249
166 13309-13312 Disease denotes ICH MESH:D002543
167 13363-13365 Disease denotes DM MESH:D009223
169 11708-11716 Species denotes patients Tax:9606
171 13519-13527 Species denotes patients Tax:9606
194 13907-13914 Species denotes patient Tax:9606
195 13605-13629 Disease denotes coronavirus disease 2019 MESH:C000657245
196 13631-13633 Disease denotes DM MESH:D009223
197 13635-13652 Disease denotes diabetes mellitus MESH:D003920
198 13659-13686 Disease denotes hepatitis B virus infection MESH:D006509
199 13692-13713 Disease denotes hypercholesterolaemia
200 13720-13732 Disease denotes hypertension MESH:D006973
201 13738-13752 Disease denotes hypothyroidism MESH:D007037
202 13794-13797 Disease denotes ICH MESH:D002543
203 13799-13823 Disease denotes intracranial haemorrhage MESH:D020300
204 13825-13828 Disease denotes IGT
205 13830-13856 Disease denotes impaired glucose tolerance MESH:D018149
206 13863-13885 Disease denotes multiple organ failure MESH:D009102
207 13935-13939 Disease denotes PCOS MESH:D011085
208 13941-13968 Disease denotes polycystic ovarian syndrome MESH:D011085
209 13974-13992 Disease denotes pulmonary embolism MESH:D011655
210 13998-14016 Disease denotes pulmonary fibrosis MESH:D011658
211 14023-14035 Disease denotes pneumothorax MESH:D011030
212 14095-14106 Disease denotes sarcoidosis MESH:D012507
213 14132-14135 Disease denotes SLE MESH:D008180
214 14137-14165 Disease denotes systemic lupus erythematosus MESH:D008180
215 14181-14196 Disease denotes thromboembolism MESH:D013923
221 14338-14345 Species denotes patient Tax:9606
222 14462-14470 Species denotes patients Tax:9606
223 14565-14573 Species denotes patients Tax:9606
224 14672-14679 Species denotes patient Tax:9606
225 14369-14378 Disease denotes haematoma
233 15366-15374 Species denotes patients Tax:9606
234 15511-15519 Species denotes patients Tax:9606
235 14994-15002 Disease denotes COVID-19 MESH:C000657245
236 15121-15130 Disease denotes mortality MESH:D003643
237 15380-15388 Disease denotes COVID-19 MESH:C000657245
238 15498-15507 Disease denotes mortality MESH:D003643
239 15542-15550 Disease denotes COVID-19 MESH:C000657245
245 16071-16079 Species denotes patients Tax:9606
246 16146-16150 Species denotes H1N1 Tax:114727
247 15744-15763 Disease denotes respiratory failure MESH:D012131
248 16107-16126 Disease denotes respiratory failure MESH:D012131
249 16301-16309 Disease denotes COVID-19 MESH:C000657245
252 16518-16526 Species denotes patients Tax:9606
253 16532-16540 Disease denotes COVID-19 MESH:C000657245
257 16960-16964 Species denotes H1N1 Tax:114727
258 17637-17644 Species denotes patient Tax:9606
259 17128-17136 Disease denotes COVID-19 MESH:C000657245
262 18679-18687 Species denotes patients Tax:9606
263 19024-19032 Species denotes patients Tax:9606
271 19167-19175 Species denotes patients Tax:9606
272 19223-19231 Species denotes patients Tax:9606
273 19407-19415 Species denotes patients Tax:9606
274 19181-19189 Disease denotes COVID-19 MESH:C000657245
275 19364-19372 Disease denotes COVID-19 MESH:C000657245
276 19530-19545 Disease denotes viral pneumonia
277 19745-19753 Disease denotes COVID-19 MESH:C000657245
281 20368-20372 Species denotes H1N1 Tax:114727
282 21041-21049 Species denotes patients Tax:9606
283 21026-21040 Disease denotes critically ill MESH:D016638
289 21628-21636 Species denotes patients Tax:9606
290 21760-21768 Species denotes patients Tax:9606
291 21861-21869 Species denotes patients Tax:9606
292 22043-22050 Species denotes patient Tax:9606
293 21725-21733 Disease denotes COVID-19 MESH:C000657245
297 22509-22516 Species denotes patient Tax:9606
298 22589-22597 Species denotes patients Tax:9606
299 22934-22939 Disease denotes COVID MESH:C000657245

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2554-2573 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T2 3080-3099 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T3 3207-3226 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T4 3363-3382 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T5 12341-12344 Phenotype denotes SLE http://purl.obolibrary.org/obo/HP_0002725
T6 12873-12879 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T7 12958-12964 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T8 13182-13188 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T9 13326-13330 Phenotype denotes Gout http://purl.obolibrary.org/obo/HP_0001997
T10 13558-13571 Phenotype denotes cor pulmonale http://purl.obolibrary.org/obo/HP_0001648
T11 13635-13652 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T12 13659-13668 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T13 13720-13732 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T14 13738-13752 Phenotype denotes hypothyroidism http://purl.obolibrary.org/obo/HP_0000821
T15 13799-13823 Phenotype denotes intracranial haemorrhage http://purl.obolibrary.org/obo/HP_0002170
T16 13830-13856 Phenotype denotes impaired glucose tolerance http://purl.obolibrary.org/obo/HP_0040270
T17 13974-13992 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T18 13998-14016 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T19 14023-14035 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T20 14132-14135 Phenotype denotes SLE http://purl.obolibrary.org/obo/HP_0002725
T21 14137-14165 Phenotype denotes systemic lupus erythematosus http://purl.obolibrary.org/obo/HP_0002725
T22 14181-14196 Phenotype denotes thromboembolism http://purl.obolibrary.org/obo/HP_0001907
T23 15744-15763 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T24 16107-16126 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T25 19536-19545 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1541-1550 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T2 9419-9428 http://purl.obolibrary.org/obo/GO_0006810 denotes Transport
T3 16236-16258 http://purl.obolibrary.org/obo/GO_0008306 denotes conditions in response
T4 20851-20859 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-234 Sentence denotes Regional extracorporeal membrane oxygenation retrieval service during the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic: an interdisciplinary team approach to maintain service provision despite increased demand
T2 236-244 Sentence denotes Abstract
T3 245-253 Sentence denotes Abstract
T4 255-265 Sentence denotes OBJECTIVES
T5 266-360 Sentence denotes Coronavirus disease 2019 is a new contagious disease that has spread rapidly across the world.
T6 361-485 Sentence denotes It is associated with high mortality in those who develop respiratory complications and require admission to intensive care.
T7 486-644 Sentence denotes Extracorporeal membrane oxygenation (ECMO) is a supportive therapy option for selected severely ill patients who deteriorate despite the best supportive care.
T8 645-799 Sentence denotes During the coronavirus disease 2019 pandemic, extra demand led to staff reorganization; hence, cardiac surgery consultants joined the ECMO retrieval team.
T9 800-908 Sentence denotes This article describes how we increased service provisions to adapt to the changes in activity and staffing.
T10 910-917 Sentence denotes METHODS
T11 918-975 Sentence denotes The data were collected from 16 March 2020 to 8 May 2020.
T12 976-1080 Sentence denotes The patients were referred through a dedicated Web-based referral portal to cope with increasing demand.
T13 1081-1204 Sentence denotes The retrieval team attended the referring hospital, reviewed the patients and made the final decision to proceed with ECMO.
T14 1206-1213 Sentence denotes RESULTS
T15 1214-1274 Sentence denotes We reported 41 ECMO retrieval runs during this study period.
T16 1275-1346 Sentence denotes Apart from staffing changes, other retrieval protocols were maintained.
T17 1347-1481 Sentence denotes The preferred cannulation method for veno-venous ECMO was drainage via the femoral vein and return to the right internal jugular vein.
T18 1482-1551 Sentence denotes There were no complications reported during cannulation or transport.
T19 1553-1564 Sentence denotes CONCLUSIONS
T20 1565-1625 Sentence denotes Staff reorganization in a crisis is of paramount importance.
T21 1626-1733 Sentence denotes For those with precise transferrable skills, experience can be gained quickly with appropriate supervision.
T22 1734-1842 Sentence denotes Therefore, the team members were selected based on skill mix rather than on roles that are more traditional.
T23 1843-2068 Sentence denotes We have demonstrated that an ECMO retrieval service can be reorganized swiftly and successfully to cope with the sudden increase in demand by spending cardiac surgeons services to supplement the anaesthetic-intensivist roles.
T24 2070-2082 Sentence denotes INTRODUCTION
T25 2083-2189 Sentence denotes Coronavirus disease 2019 (COVID-19) is a new contagious disease, a public health emergency and a pandemic.
T26 2190-2379 Sentence denotes It is caused by severe acute respiratory syndrome coronavirus 2, a novel coronavirus that has spread rapidly across the world since the first reports in December 2019 [1] from Wuhan, China.
T27 2380-2473 Sentence denotes Current evidence suggests a zoonotic source, transmitted to humans that spreads via droplets.
T28 2474-2574 Sentence denotes It has a spectrum of clinical presentations, from mild coryzal-like symptoms to respiratory failure.
T29 2575-2841 Sentence denotes It is associated with high mortality in those who develop respiratory complications and require admission to the intensive care unit (ICU), with preliminary data from the Intensive Care National Audit and Research Centre of the UK indicating up to 50% mortality [2].
T30 2842-3021 Sentence denotes Extracorporeal membrane oxygenation (ECMO) is a treatment option to support selected severely ill patients who deteriorate despite mechanical ventilation and best supportive care.
T31 3022-3130 Sentence denotes Its use has been more established in patients with severe respiratory failure since the H1N1 pandemic [3–6].
T32 3131-3227 Sentence denotes Table 1 shows the UK guidelines for ECMO indications for patients in severe respiratory failure.
T33 3228-3310 Sentence denotes Table 1: UK ECMO referral guidelines during the coronavirus disease 2019 pandemic
T34 3311-3330 Sentence denotes Inclusion criteriaa
T35 3331-3382 Sentence denotes • Potentially reversible severe respiratory failure
T36 3383-3409 Sentence denotes • Lung injury score [7] ≥3
T37 3410-3491 Sentence denotes • Failed trial of ventilation in the prone position ≥6 h (unless contraindicated)
T38 3492-3630 Sentence denotes • Failed airway pressure release ventilation or ‘high positive end-expiratory pressure ventilation strategy’ ≥6 h (unless contraindicated)
T39 3631-3671 Sentence denotes • Clinical frailty scale [8] category ≤3
T40 3672-3838 Sentence denotes • If the Respiratory Extracorporeal Membrane Oxygenation Survival Prediction score [9] is ≤3, ECMO should be considered only after agreement across at least 2 centres
T41 3839-3857 Sentence denotes Exclusion criteria
T42 3858-3889 Sentence denotes • Refractory multiorgan failure
T43 3890-3954 Sentence denotes a Revised in response to the coronavirus disease 2019 pandemic.
T44 3955-3997 Sentence denotes ECMO: extracorporeal membrane oxygenation.
T45 3998-4130 Sentence denotes During COVID-19, it was anticipated that an increasing number of the patients would be referred for ECMO and intensive care support.
T46 4131-4267 Sentence denotes We predicted a surge in ECMO retrieval activity that would require a larger number of medical personnel to staff ICUs and the ECMO team.
T47 4268-4394 Sentence denotes Our normal 3-person ECMO retrieval team would be insufficient to cope with the increasing demand during the COVID-19 pandemic.
T48 4395-4483 Sentence denotes It was not practical in terms of both resources and time to recruit and train new staff.
T49 4484-4564 Sentence denotes Therefore, we reconfigured our ECMO retrieval team to included cardiac surgeons.
T50 4565-4736 Sentence denotes We paired the most experienced surgical consultant with a senior anaesthetic fellow (trainee) and the less experienced surgical consultants with an anaesthetic consultant.
T51 4737-4843 Sentence denotes This plan fulfilled the obligation to provide a consultant grade team leader and an airway-trained doctor.
T52 4844-4995 Sentence denotes Our goal was to report our initial experience with this expanded ECMO retrieval team in the eastern region of the UK during the 2020 COVID-19 pandemic.
T53 4997-5018 Sentence denotes MATERIALS AND METHODS
T54 5019-5086 Sentence denotes The data were collected from 16 March 2020 to 8 May 2020 (54 days).
T55 5087-5162 Sentence denotes Until 25 March, we received referrals by telephone on a standard pro forma.
T56 5163-5311 Sentence denotes Thereafter, we used a dedicated electronic referral portal to cope with the increased demand—referapatient® (Bloomsbury Health Limited, London, UK).
T57 5312-5414 Sentence denotes The electronic-based referral system was user-friendly, secure and improved efficacy in communication.
T58 5415-5476 Sentence denotes It did not require additional training or hardware resources.
T59 5477-5556 Sentence denotes A team of 3 experienced intensive care consultants reviewed the ECMO referrals.
T60 5557-5729 Sentence denotes They provided direct advice and activated the retrieval team when necessary following multidisciplinary discussions with 2 other senior intensivists working alternate days.
T61 5730-5883 Sentence denotes Before considering ECMO support, as a prerequisite, referring units were advised to place the patient in a prone position to improve the ventilation [9].
T62 5884-6031 Sentence denotes There was no specific time frame for patient to stay proned before considering for ECMO, decision was based on clinical progression of the patient.
T63 6032-6208 Sentence denotes To ascertain the candidacy of the patient for ECMO, the retrieval team initially assessed the patient in the ICU, and reviewed the chest radiographs and results of blood tests.
T64 6209-6339 Sentence denotes We obtained verbal consent for ECMO from the patient’s next of kin over the telephone explaining the risks and potential benefits.
T65 6340-6479 Sentence denotes When the decision is made to proceed with ECMO, our preference is that cannulation be performed in the referring hospital’s operating room.
T66 6480-6716 Sentence denotes We require a dedicated anaesthetist, theatre practitioner and a radiographer with an image intensifier from the referring team to insert a new central venous line on the left side of the neck and facilitate ECMO insertion, respectively.
T67 6717-6806 Sentence denotes A World Health Organization surgical safety checklist was completed prior to cannulation.
T68 6807-7010 Sentence denotes We observed the recommendations from the Extracorporeal Life Support Organization (that veno-venous ECMO (VV-ECMO) be initiated by staff personal protective equipment with full contact precautions) [10].
T69 7011-7133 Sentence denotes Before the patient arrived in the operating room, the ECMO retrieval team had scrubbed and donned the appropriate apparel.
T70 7134-7241 Sentence denotes The equipment was ready so the team could proceed immediately (Fig. 1) in case the patient became unstable.
T71 7242-7356 Sentence denotes Changing the patient from the prone to the supine position for cannulation was performed onto the operating table.
T72 7357-7709 Sentence denotes Under aseptic conditions, the femoral vessel was punctured percutaneously under directed ultrasound guidance and the old central line in the neck was rewired for insertion of the return cannula into the internal jugular vein (our preference is to insert return cannulas on the right side of the neck because of the straighter path to the right atrium).
T73 7710-7904 Sentence denotes Once the positions of both guide wires were confirmed with the image intensifier, systemic heparin was administered, initially 2500 IU and another 2500 IU if required based on body surface area.
T74 7905-7962 Sentence denotes We followed our institutional anticoagulation guidelines.
T75 7963-8164 Sentence denotes A higher than usual degree of anticoagulation may be indicated, and a case-by-case assessment of bleeding versus thrombotic risks is recommended pending further evidence in patients with COVID-19 [10].
T76 8165-8256 Sentence denotes The puncture site was then dilated sequentially to the appropriate diameter of the cannula.
T77 8257-8734 Sentence denotes For drainage, we used the femoral venous Maquet (BIOLINE coating) HLS cannula® (Getinge AB, Gothenburg, Sweden), type PVL-2555 with an outer diameter of 7.6–8.3 mm (23–25 Fr) and a maximum insertion length of 380–550 mm; it connects to standard 9.5 mm (3/8 inch) diameter tubing.The return internal jugular venous cannula used is the Maquet (BIOLINE coating) HLS arterial cannula® type PAS-1915 with an outer diameter of 6.3 mm (19 Fr) and a maximum insertion length of 150 mm.
T78 8735-8840 Sentence denotes It has 2 side holes with a perforation length of 10 mm and connects to standard 9.5 mm (3/8 inch) tubing.
T79 8841-8971 Sentence denotes The cannulae were fixed securely in position with 3 sutures and Hollister® dressings (Hollister Limited, Winnersh, Wokingham, UK).
T80 8972-9263 Sentence denotes We used Thoratec Levitronix® (Levitronix GmbH, Zurich, Switzerland) consoles and ranges of oxygenators depending on availability (Paragon® Chalice Medical Limited, Worksop, Nottinghamshire, UK; Eurosets® Eurosets S.R.L, Medolla, Italy and Medos hilite®, Inspiration Healthcare, Crawley, UK).
T81 9264-9273 Sentence denotes Figure 1:
T82 9275-9334 Sentence denotes Extracorporeal membrane oxygenator insertion trolley setup.
T83 9335-9522 Sentence denotes All patients were transferred by a dedicated ECMO ambulance service (Amvale Medical Transport Limited, Scunthorpe, UK) [11]; 2 vehicles were used for transfer to ensure social distancing.
T84 9523-9581 Sentence denotes A standardized ECMO report was recorded for every patient.
T85 9582-9678 Sentence denotes Management of ECMO in patients with COVID-19 was similar to that in standard patients with ECMO.
T86 9680-9687 Sentence denotes RESULTS
T87 9688-9837 Sentence denotes In total, 229 referrals (21.2% of UK referrals) were received during the period of the study at the peak of the COVID-19 pandemic in the UK (Fig. 2).
T88 9838-9929 Sentence denotes This number was approximately an eight-fold increase compared with the same period in 2019.
T89 9930-10013 Sentence denotes Of the 229 referred patients, 41 (17.9%) were considered suitable for ECMO support.
T90 10014-10179 Sentence denotes The retrieval team assessed all patients clinically on arrival at the referring hospital; 4 of these patients were not suitable for ECMO support for various reasons.
T91 10180-10291 Sentence denotes Two of these 4 were transferred to Royal Papworth Hospital (RPH) for non-ECMO support and monitoring (Table 2).
T92 10292-10486 Sentence denotes One of these 2 patients who were retrieved without ECMO needed ECMO support while at RPH within 24 h due to further deterioration in clinical condition; the other died of multiple organ failure.
T93 10487-10569 Sentence denotes None of the patients were turned down because of staffing or resource limitations.
T94 10570-10700 Sentence denotes Retrieval runs involved 19 different hospitals in the region; the hospitals visited were on average 52.3 km (range 0–104 km) away.
T95 10701-10813 Sentence denotes The mean retrieval time (time from when the team left RPH until they arrived back) was 6.6 h (range 2.6–10.5 h).
T96 10814-10959 Sentence denotes There was no difference in mean retrieval time when the team was led by surgeons or by an anaesthetist-intensivist group (6.5 vs 6.6 h; P = 0.7).
T97 10960-11177 Sentence denotes At the time of referral, all patients had either positive test results for severe acute respiratory syndrome coronavirus 2 or were considered highly suspicious due to clinical presentation and radiological signs [12].
T98 11178-11293 Sentence denotes When a decision to proceed with ECMO was made, all patients were successfully cannulated at the referring hospital.
T99 11294-11497 Sentence denotes The preferred cannulation method for VV-ECMO was drainage via the femoral veins in all cases (right 84.2% and left 15.8%) and return to the internal jugular vein in all cases (right 97.3% and left 2.7%).
T100 11498-11507 Sentence denotes Figure 2:
T101 11509-11686 Sentence denotes Extracorporeal membrane oxygenator referrals versus retrieval to Royal Papworth Hospital (referapatient® system; Bloomsbury Health Limited, London, UK; live from 25 March 2020).
T102 11687-11695 Sentence denotes Table 2:
T103 11697-11777 Sentence denotes Details of patients treated with veno-venous extracorporeal membrane oxygenation
T104 11778-11897 Sentence denotes Age (years) Sex BMI (kg/m2) Comorbidities Team leader COVID status Retrieval time (h) Destination Complications
T105 11898-11926 Sentence denotes 66 M 32.1 I + 6.3 RPH
T106 11927-11959 Sentence denotes 57 M 27.8 I + 5.8 RPH PE
T107 11960-11992 Sentence denotes 24 F 73.0 I + 8.0a NA NA
T108 11993-12025 Sentence denotes 50 M 25.9 I + 5.5 RPH PE
T109 12026-12058 Sentence denotes 30 F 27.0 S + 6.7 RPH PE
T110 12059-12101 Sentence denotes 37 F 20.8 HT, PCOS I + 3.0 RPH ICH
T111 12102-12139 Sentence denotes 41 F 27.5 S + 6.5 RPH PE, Pnx
T112 12140-12177 Sentence denotes 56 M 25.6 S + 7.8 RPH PE, ACP
T113 12178-12218 Sentence denotes 58 M 31.1 DM, HTN I + 5.8 RPH PE
T114 12219-12252 Sentence denotes 49 M 25.2 S + 5.4 RPH MOF
T115 12253-12288 Sentence denotes 45 M 37.2 DM S + 6.3 RPH PE
T116 12289-12322 Sentence denotes 45 M 24.5 S + 6.3 RPH MOF
T117 12323-12360 Sentence denotes 23 F 29.4 SCT, SLE S + 7.2 RPH
T118 12361-12393 Sentence denotes 32 F 27.7 I + 7.1 RPH PE
T119 12394-12427 Sentence denotes 42 M 32.1 S + 6.2 RPH ICH
T120 12428-12469 Sentence denotes 60 M 27.7 HBV, DM I + 10.5 RPH PE
T121 12470-12515 Sentence denotes 47 M 23.6 DM, HTN S + 8.9 RPH PE, ICH
T122 12516-12548 Sentence denotes 48 M 41.6 S + 6.3 RPH PE
T123 12549-12581 Sentence denotes 42 M 32.1 S + 6.9 RPH PE
T124 12582-12618 Sentence denotes 28 M 39.5 DM S + 8.1 RPH STE
T125 12619-12652 Sentence denotes 49 F 33.2 S + 5.2 RPH MOF
T126 12653-12681 Sentence denotes 51 M 23.1 S + 7.3 RPH
T127 12682-12710 Sentence denotes 25 M 46.3 S + 8.3 RPH
T128 12711-12743 Sentence denotes 50 M 34.0 S − 6.9 RPH PE
T129 12744-12780 Sentence denotes 37 M 21.3 S + 2.7 RPH PE, PF
T130 12781-12812 Sentence denotes 39 M 32.9 DM S + 5.8 RPH
T131 12813-12854 Sentence denotes 51 M 26.0 HTN S + 4.6 RPH PF, Pnx
T132 12855-12899 Sentence denotes 50 M 32.1 HTN, asthma S + 7.3 RPH PF
T133 12900-12935 Sentence denotes 44 M 33.9 HT, Sa S + 7.3 RPH
T134 12936-12996 Sentence denotes 37 M 23.2 HTN, HC, asthma S + 5.5 RPH Fungal empyema
T135 12997-13029 Sentence denotes 49 F 45.4 IGT I + 6.2 RPH
T136 13030-13061 Sentence denotes 43 M 37.9 S + 6.8 Otherb
T137 13062-13093 Sentence denotes 57 M 30.7 S + 7.0 Otherb
T138 13094-13127 Sentence denotes 57 M 32.3 I + 7.1 RPH ICH
T139 13128-13159 Sentence denotes 60 M 30.8 HC S + 5.3a NA
T140 13160-13204 Sentence denotes 46 F 33.8 DM, HTN, asthma S + 5.1 RPH
T141 13205-13237 Sentence denotes 53 M 27.4 S − 5.2 RPH PE
T142 13238-13270 Sentence denotes 35 M 36.7 S + 7.5 RPH PF
T143 13271-13312 Sentence denotes 46 M 43.2 HTN S + 7.3 RPH PE, ICH
T144 13313-13349 Sentence denotes 45 F 33.3 Gout S + 7.9 Otherb
T145 13350-13385 Sentence denotes 53 M 38.1 DM S + 10.5 Otherb
T146 13386-13417 Sentence denotes a Retrieval time for the team.
T147 13418-13546 Sentence denotes b Guy’s and St Thomas Hospital, London and Glenfield Hospital, Leicester; further details for these patients are not available.
T148 13547-14041 Sentence denotes ACP: acute cor pulmonale; BMI: body mass index; COVID-19: coronavirus disease 2019; DM: diabetes mellitus; HBV: hepatitis B virus infection; HC: hypercholesterolaemia; HTN: hypertension; HT: hypothyroidism; I: intensivist/anaesthetist consultant; ICH: intracranial haemorrhage; IGT: impaired glucose tolerance; MOF: multiple organ failure; NA: not applicable (patient was not retrieved); PCOS: polycystic ovarian syndrome; PE: pulmonary embolism; PF: pulmonary fibrosis; Pnx: pneumothorax; RPH:
T149 14042-14197 Sentence denotes Royal Papworth Hospital; S: surgical consultant; Sa: sarcoidosis; SCT: sickle cell trait; SLE: systemic lupus erythematosus; STE: systemic thromboembolism.
T150 14198-14333 Sentence denotes The mean age was 45 years (range 23–66 years); the male-to-female ratio was 3; and the mean body mass index was 32.2 (range 20.8–73.0).
T151 14334-14457 Sentence denotes One patient had a subsequent groin haematoma that was managed conservatively; no other procedural complications were noted.
T152 14458-14551 Sentence denotes All patients had a post-ECMO insertion whole-body computed tomography scan on arrival at RPH.
T153 14552-14746 Sentence denotes Thirty-seven patients were cannulated in the operating room under image intensifier guidance in a controlled fashion; 1 patient was cannulated in the ICU without the use of an image intensifier.
T154 14747-14836 Sentence denotes There were no complications during transfer, and all transfers were accomplished by road.
T155 14837-14977 Sentence denotes In total, 90.3% cases were transferred to the RPH, but due to capacity constraints at the time, 9.7% were transferred to other ECMO centres.
T156 14979-14989 Sentence denotes DISCUSSION
T157 14990-15079 Sentence denotes The COVID-19 pandemic has tested the resilience of every health care service and society.
T158 15080-15159 Sentence denotes This virus spreads easily and has a high mortality rate in the population [13].
T159 15160-15281 Sentence denotes In addition, deficiencies in the supplies of personal protective equipment have been a problem in several countries [14].
T160 15282-15389 Sentence denotes Many surgical groups and advisory committees have advised caution when operating on patients with COVID-19.
T161 15390-15579 Sentence denotes Cardiothoracic surgery is considered high risk [15], and reports in the literature suggest a higher rate of mortality in patients with, or contracting, COVID-19 in the perioperative period.
T162 15580-15764 Sentence denotes In the UK, the National Health Service England has commissioned 5 surgical centres on a regional basis to cover the whole country to provide ECMO support for adult respiratory failure.
T163 15765-15855 Sentence denotes The RPH covers the eastern region of the UK and is one of the designated centres for ECMO.
T164 15856-15993 Sentence denotes Each centre provides an around-the-clock retrieval service and under usual operating conditions is responsible for providing 3 ECMO beds.
T165 15994-16182 Sentence denotes The current system was developed in response to the increasing number of the patients requiring ECMO support for respiratory failure, first seen in the H1N1 influenza pandemic of 2010 [4].
T166 16183-16289 Sentence denotes This provision can be increased further during surge conditions in response to winter influenza epidemics.
T167 16290-16370 Sentence denotes During the COVID-19 pandemic, the number of beds at each centre increased to 20.
T168 16371-16541 Sentence denotes In our tertiary cardiothoracic centre, the utilization of ICU beds was expanded to more than usual capacity (from 46 to 65 beds) and redirected to patients with COVID-19.
T169 16542-16628 Sentence denotes Further surge plans were in place to increase the ICU bed capacity to 100 if required.
T170 16629-16781 Sentence denotes In response to national and other centres’ recommendations, all elective cardiac surgery activity was paused to provide this expansion in ICU beds [15].
T171 16782-16943 Sentence denotes Normally the team that provided ECMO assessment and retrieval at RPH included a consultant (attending) anaesthetist, an ECMO specialist nurse and a perfusionist.
T172 16944-17116 Sentence denotes During the 2010 H1N1 influenza pandemic, our VV-ECMO retrieval team was expanded to included surgeons, but over time, an anaesthetist-intensivist team took over completely.
T173 17117-17269 Sentence denotes During the COVID-19 pandemic, there was a need for extended intensive care requiring additional medical staff and more resident anaesthetic consultants.
T174 17270-17415 Sentence denotes Hence, we anticipated that the ECMO retrieval team would be busier than usual and would be more difficult to staff using the original team model.
T175 17416-17650 Sentence denotes To deal with this problem, we reconfigured the original ECMO team by adding cardiac surgery consultants to the ICU rota and the ECMO retrieval team to ensure that we could provide both safe service delivery and equitable patient care.
T176 17651-17793 Sentence denotes The rationale for redeploying cardiac surgical consultants to the ECMO retrieval team was that the surgical consultants were the ideal choice.
T177 17794-17988 Sentence denotes Firstly, they are familiar with cardiopulmonary bypass circuits and ECMO due to their subspecialist surgical services, for example cardiothoracic transplant and pulmonary endarterectomy surgery.
T178 17989-18203 Sentence denotes Secondly, they also have experience in percutaneous cannulation of major vessels due to their work with transcatheter aortic valve implantation, minimally invasive cardiac surgery and the intra-aortic balloon pump.
T179 18204-18327 Sentence denotes Thirdly, they were available because of reduced surgical activity, and they required no additional training or supervision.
T180 18328-18453 Sentence denotes The rest of the ECMO team included nurses, all of whom were experienced with the equipment, retrieval and transfer protocols.
T181 18454-18818 Sentence denotes It was also anticipated that due to uncertainty of support from referring hospitals under adverse stress during the pandemic, the difficulties in communicating in full personal protective equipment and the complexity of some patients, the current 3-person ECMO team would be insufficient to deal with the demand and the support required at the peripheral hospital.
T182 18819-18892 Sentence denotes Hence, we added an additional surgical member to the ECMO retrieval team.
T183 18893-19048 Sentence denotes The ECMO retrieval teams were organized to be self-sufficient, with less reliance on medical help from the hospital from which the patients were retrieved.
T184 19049-19190 Sentence denotes The Extracorporeal Life Support Organization recommends that VV-ECMO should only be considered for carefully selected patients with COVID-19.
T185 19191-19343 Sentence denotes It should not be considered for patients who are unlikely to benefit and for those with significantly reduced life expectancy from pre-existing disease.
T186 19344-19564 Sentence denotes At the start of the COVID-19 pandemic, the outcome of ECMO for patients with this new disease remained unknown, and the rationale for ECMO support was based on prior experience in other viral pneumonia pandemics [4, 16].
T187 19565-19640 Sentence denotes VV-ECMO is a highly technical supportive therapy and is resource intensive.
T188 19641-19922 Sentence denotes Although the distribution of this therapy should be as equitable as possible, during a pandemic such as COVID-19, eligibility for ECMO support should focus on optimal candidates for recovery [10, 16]; the UK national ECMO guidelines were altered to reflect this approach (Table 1).
T189 19923-20049 Sentence denotes This report describes the changes that we made to our ECMO retrieval service to cope with the eight-fold increase in activity.
T190 20050-20400 Sentence denotes Modification of the interdisciplinary ECMO retrieval service during this pandemic crisis to involve cardiac surgeons and intensivists, in addition to anaesthetists, perfusionists and ECMO-trained nursing staff (who had extensive experience working together as a retrieval team in the last several years because of the H1N1 pandemic) was advantageous.
T191 20401-20509 Sentence denotes It allowed the service to cope successfully with an unprecedented increase in demand in a very limited time.
T192 20510-20650 Sentence denotes It facilitated the release of intensive care and anaesthetic consultant staff for additional intensive care work and being resident on-call.
T193 20651-20775 Sentence denotes It permitted the service to be sustained and allowed us to train and expose more doctors to this experience in a short time.
T194 20776-20934 Sentence denotes Further benefits included close integration of the team, skill sharing and learning opportunities for all ECMO team including both anaesthetists and surgeons.
T195 20935-21247 Sentence denotes Surgeons gained the opportunity to experience out-of-theatre organization and to deal with critically ill patients in unfamiliar and remote environments (where hands-on experience from a surgical colleague is not available and the team members have to help each other from the available resources and personnel).
T196 21248-21390 Sentence denotes This experience helped the team to develop leadership qualities and clinical skills, which are valuable in their normal day-to-day activities.
T197 21391-21559 Sentence denotes Surgeons who were both confident in cannulation and able to recognize and deal with the consequences of complications mentored the less experienced members of the team.
T198 21561-21572 Sentence denotes Limitations
T199 21573-21608 Sentence denotes This study has several limitations.
T200 21609-21790 Sentence denotes The numbers of the patients included in this study are limited at the time of submission due to the novel nature of COVID-19 and the limited number of patients needing ECMO support.
T201 21791-21830 Sentence denotes The population included is adults only.
T202 21831-22015 Sentence denotes The selection and referral of patients for consideration for ECMO is dependent on the local ICU team, and the outcome of ECMO for this disease was unknown at the start of the epidemic.
T203 22016-22251 Sentence denotes An alternative strategy of patient assessment and transfer in the prone position, with delayed ECMO cannulation, has been advocated by others but has not been directly compared here because the numbers did not permit such a comparison.
T204 22252-22432 Sentence denotes This study is not a clinical outcome study but rather a consideration of the reorganizing and restructuring of locally available resources to establish a team of medical personnel.
T205 22434-22444 Sentence denotes CONCLUSION
T206 22445-22627 Sentence denotes We are satisfied that it was possible to initiate ECMO in every patient when necessary, there were no cannulation complications and none of the patients deteriorated during transfer.
T207 22628-22773 Sentence denotes We therefore recommend this model of staffing; it was successful in our experience during an unprecedented increase in demand for ECMO retrieval.
T208 22774-22898 Sentence denotes It allowed our service to rapidly increase capacity and cope successfully with the sustained pressure over an 8-week period.
T209 22899-23004 Sentence denotes If there is a further surge in the COVID cases in future, we can reintroduce this staffing model quickly.
T210 23006-23022 Sentence denotes ACKNOWLEDGEMENTS
T211 23023-23682 Sentence denotes The following contributors are acknowledged for participation in this study at different levels; Charles Chan, Julian Rios Rios, Thomas Chloros, Ester Rovira, Elefterios Koumas, Lenka Cagova, Laurien Van Koppenhagan, Aileen Tan, Ida Ukor, Dan Cochrane, Angus Butchart, Daniel Aston, Martin Dempsey, Dino Mijatovic, Laura Bowden, Louise Meagher, Beatrice Dinculease, Ellis Gillett, Katie Green, Andrew Hadley-Brown, Amy Harrison, Olivia Moore, Ellie Watkins, Nabeel Razzaq, Kristy Dempster, Eve McPhilimey, Ann Marie Murton, Graeme Nias, Jose Canamares, Paolo Marchiori, Daniel Berwick, Giordano Paiella, Andy Heath, George Baily, Jonathan Cox and Karin Tahir.
T212 23683-23704 Sentence denotes Conflict of interest:
T213 23705-23720 Sentence denotes Nnone declared.
T214 23722-23742 Sentence denotes Author contributions
T215 23743-23754 Sentence denotes Muhammad U.
T216 23755-23761 Sentence denotes Rafiq:
T217 23762-23903 Sentence denotes Data curation; Formal analysis; Methodology; Project administration; Resources; Validation; Writing—original draft; Writing—review & editing.
T218 23904-23920 Sentence denotes Kamen Valchanov:
T219 23921-23978 Sentence denotes Conceptualization; Supervision; Writing—review & editing.
T220 23979-23995 Sentence denotes Alain Vuylsteke:
T221 23996-24040 Sentence denotes Conceptualization; Writing—review & editing.
T222 24041-24049 Sentence denotes Fouad J.
T223 24050-24058 Sentence denotes Taghavi:
T224 24059-24084 Sentence denotes Writing—review & editing.
T225 24085-24094 Sentence denotes Swetha B.
T226 24095-24100 Sentence denotes Iyer:
T227 24101-24126 Sentence denotes Writing—review & editing.
T228 24127-24139 Sentence denotes Catherine D.
T229 24140-24150 Sentence denotes Sudarshan:
T230 24151-24176 Sentence denotes Writing—review & editing.
T231 24177-24192 Sentence denotes Jo-Anne Fowles:
T232 24193-24256 Sentence denotes Data curation; Resources; Validation; Writing—review & editing.
T233 24257-24272 Sentence denotes Simon Anderson:
T234 24273-24298 Sentence denotes Writing—review & editing.
T235 24299-24318 Sentence denotes Pooveshni Govender:
T236 24319-24344 Sentence denotes Writing—review & editing.
T237 24345-24360 Sentence denotes Miranda Holmes:
T238 24361-24386 Sentence denotes Writing—review & editing.
T239 24387-24403 Sentence denotes Alexander White:
T240 24404-24429 Sentence denotes Writing—review & editing.
T241 24430-24442 Sentence denotes Abhi Mishra:
T242 24443-24457 Sentence denotes Data curation.
T243 24458-24470 Sentence denotes Lucy Mwaura:
T244 24471-24511 Sentence denotes Data curation; Writing—review & editing.
T245 24512-24520 Sentence denotes David P.
T246 24521-24529 Sentence denotes Jenkins:
T247 24530-24636 Sentence denotes Conceptualization; Methodology; Supervision; Validation; Writing—original draft; Writing—review & editing.
T248 24638-24658 Sentence denotes Reviewer information
T249 24659-24738 Sentence denotes European Journal of Cardio-Thoracic Surgery thanks Norihisa Shigemura, Kerem M.
T250 24739-24848 Sentence denotes Vural and the other, anonymous reviewer(s) for their contribution to the peer review process of this article.

0_colil

Id Subject Object Predicate Lexical cue
32964930-31950516-6645 2358-2359 31950516 denotes 1
32964930-32203711-6646 3127-3128 32203711 denotes 6
32964930-3202424-6647 3404-3405 3202424 denotes 7
32964930-16129869-6648 3657-3658 16129869 denotes 8
32964930-24693864-6649 3756-3757 24693864 denotes 9
32964930-24693864-6650 5880-5881 24693864 denotes 9
32964930-31221511-6651 9455-9457 31221511 denotes 11
32964930-32105637-6652 11173-11175 32105637 denotes 12
32964930-32250751-6653 15155-15157 32250751 denotes 13
32964930-32291274-6654 15277-15279 32291274 denotes 14
32964930-32267963-6655 15438-15440 32267963 denotes 15
32964930-21976615-6656 16179-16180 21976615 denotes 4
32964930-32267963-6657 16777-16779 32267963 denotes 15
32964930-21976615-6658 19557-19558 21976615 denotes 4
32964930-19762075-6659 19560-19562 19762075 denotes 16
32964930-19762075-6660 19837-19839 19762075 denotes 16

2_test

Id Subject Object Predicate Lexical cue
32964930-31950516-28904856 2358-2359 31950516 denotes 1
32964930-32203711-28904857 3127-3128 32203711 denotes 6
32964930-3202424-28904858 3404-3405 3202424 denotes 7
32964930-16129869-28904859 3657-3658 16129869 denotes 8
32964930-24693864-28904860 3756-3757 24693864 denotes 9
32964930-24693864-28904861 5880-5881 24693864 denotes 9
32964930-31221511-28904862 9455-9457 31221511 denotes 11
32964930-32105637-28904863 11173-11175 32105637 denotes 12
32964930-32250751-28904864 15155-15157 32250751 denotes 13
32964930-32291274-28904865 15277-15279 32291274 denotes 14
32964930-32267963-28904866 15438-15440 32267963 denotes 15
32964930-21976615-28904867 16179-16180 21976615 denotes 4
32964930-32267963-28904868 16777-16779 32267963 denotes 15
32964930-21976615-28904869 19557-19558 21976615 denotes 4
32964930-19762075-28904870 19560-19562 19762075 denotes 16
32964930-19762075-28904871 19837-19839 19762075 denotes 16

MyTest

Id Subject Object Predicate Lexical cue
32964930-31950516-28904856 2358-2359 31950516 denotes 1
32964930-32203711-28904857 3127-3128 32203711 denotes 6
32964930-3202424-28904858 3404-3405 3202424 denotes 7
32964930-16129869-28904859 3657-3658 16129869 denotes 8
32964930-24693864-28904860 3756-3757 24693864 denotes 9
32964930-24693864-28904861 5880-5881 24693864 denotes 9
32964930-31221511-28904862 9455-9457 31221511 denotes 11
32964930-32105637-28904863 11173-11175 32105637 denotes 12
32964930-32250751-28904864 15155-15157 32250751 denotes 13
32964930-32291274-28904865 15277-15279 32291274 denotes 14
32964930-32267963-28904866 15438-15440 32267963 denotes 15
32964930-21976615-28904867 16179-16180 21976615 denotes 4
32964930-32267963-28904868 16777-16779 32267963 denotes 15
32964930-21976615-28904869 19557-19558 21976615 denotes 4
32964930-19762075-28904870 19560-19562 19762075 denotes 16
32964930-19762075-28904871 19837-19839 19762075 denotes 16

testtesttest

Id Subject Object Predicate Lexical cue uberon_id
T1 24-32 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T4 501-509 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T7 1422-1434 Body_part denotes femoral vein http://purl.obolibrary.org/obo/UBERON_0001361
T8 1459-1480 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T9 2857-2865 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T12 3385-3389 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T13 3501-3507 Body_part denotes airway http://purl.obolibrary.org/obo/UBERON_0000117|http://purl.obolibrary.org/obo/UBERON_0001005
T15 3650-3655 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T16 3708-3716 Body_part denotes Membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T19 3976-3984 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T22 4821-4827 Body_part denotes airway http://purl.obolibrary.org/obo/UBERON_0000117|http://purl.obolibrary.org/obo/UBERON_0001005
T24 5342-5348 Body_part denotes system http://purl.obolibrary.org/obo/UBERON_0000467
T25 6163-6168 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 6196-6201 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T27 6202-6207 Body_part denotes tests http://purl.obolibrary.org/obo/UBERON_0000473
T28 6667-6671 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T29 7395-7401 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T30 7498-7502 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T31 7560-7581 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T32 7652-7656 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T33 7695-7707 Body_part denotes right atrium http://purl.obolibrary.org/obo/UBERON_0002078
T34 7886-7898 Body_part denotes body surface http://purl.obolibrary.org/obo/UBERON_0002416
T35 8547-8563 Body_part denotes internal jugular http://purl.obolibrary.org/obo/UBERON_0001586
T36 8893-8900 Body_part denotes sutures http://purl.obolibrary.org/obo/UBERON_0003685|http://purl.obolibrary.org/obo/UBERON_4200215
T38 9290-9298 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T41 10472-10477 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062|http://purl.obolibrary.org/obo/UBERON_0003103
T43 10778-10782 Body_part denotes back http://purl.obolibrary.org/obo/UBERON_0001137
T44 11360-11373 Body_part denotes femoral veins http://purl.obolibrary.org/obo/UBERON_0001361
T45 11434-11455 Body_part denotes internal jugular vein http://purl.obolibrary.org/obo/UBERON_0001586
T46 11524-11532 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T49 11614-11620 Body_part denotes system http://purl.obolibrary.org/obo/UBERON_0000467
T50 11757-11765 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T53 13872-13877 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062|http://purl.obolibrary.org/obo/UBERON_0003103
T55 14120-14124 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T56 14249-14253 Body_part denotes male http://purl.obolibrary.org/obo/UBERON_0003101
T57 14257-14263 Body_part denotes female http://purl.obolibrary.org/obo/UBERON_0003100
T58 14363-14368 Body_part denotes groin http://purl.obolibrary.org/obo/UBERON_0008337
T59 14497-14507 Body_part denotes whole-body http://purl.obolibrary.org/obo/UBERON_0000468|http://purl.obolibrary.org/obo/UBERON_0013702
T61 16006-16012 Body_part denotes system http://purl.obolibrary.org/obo/UBERON_0000467
T62 18107-18119 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T63 24824-24831 Body_part denotes process http://purl.obolibrary.org/obo/UBERON_0004529