PMC:7543426 / 5604-6112 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T37","span":{"begin":96,"end":101},"obj":"Body_part"},{"id":"T38","span":{"begin":278,"end":286},"obj":"Body_part"}],"attributes":[{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma67498"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma62871"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T32","span":{"begin":96,"end":101},"obj":"Body_part"}],"attributes":[{"id":"A32","pred":"uberon_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T51","span":{"begin":428,"end":430},"obj":"Disease"},{"id":"T52","span":{"begin":493,"end":495},"obj":"Disease"}],"attributes":[{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0007191"},{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0021036"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T77","span":{"begin":96,"end":101},"obj":"http://purl.obolibrary.org/obo/UBERON_0003103"},{"id":"T78","span":{"begin":210,"end":211},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T79","span":{"begin":251,"end":261},"obj":"http://purl.obolibrary.org/obo/OBI_0000968"},{"id":"T80","span":{"begin":304,"end":307},"obj":"http://purl.obolibrary.org/obo/CLO_0052882"},{"id":"T81","span":{"begin":304,"end":307},"obj":"http://purl.obolibrary.org/obo/CLO_0053434"},{"id":"T82","span":{"begin":325,"end":328},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T83","span":{"begin":346,"end":349},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T84","span":{"begin":373,"end":376},"obj":"http://purl.obolibrary.org/obo/CLO_0007803"},{"id":"T85","span":{"begin":417,"end":420},"obj":"http://purl.obolibrary.org/obo/CLO_0001159"},{"id":"T86","span":{"begin":487,"end":491},"obj":"http://purl.obolibrary.org/obo/PR_000002064"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"163","span":{"begin":325,"end":328},"obj":"Gene"},{"id":"164","span":{"begin":346,"end":349},"obj":"Gene"},{"id":"165","span":{"begin":367,"end":371},"obj":"Gene"},{"id":"166","span":{"begin":387,"end":391},"obj":"Gene"},{"id":"167","span":{"begin":410,"end":415},"obj":"Gene"},{"id":"168","span":{"begin":421,"end":426},"obj":"Gene"},{"id":"169","span":{"begin":443,"end":447},"obj":"Gene"},{"id":"170","span":{"begin":462,"end":466},"obj":"Gene"},{"id":"171","span":{"begin":487,"end":491},"obj":"Gene"}],"attributes":[{"id":"A163","pred":"tao:has_database_id","subj":"163","obj":"Gene:920"},{"id":"A164","pred":"tao:has_database_id","subj":"164","obj":"Gene:925"},{"id":"A165","pred":"tao:has_database_id","subj":"165","obj":"Gene:2526"},{"id":"A166","pred":"tao:has_database_id","subj":"166","obj":"Gene:1803"},{"id":"A167","pred":"tao:has_database_id","subj":"167","obj":"Gene:2833"},{"id":"A168","pred":"tao:has_database_id","subj":"168","obj":"Gene:2833"},{"id":"A169","pred":"tao:has_database_id","subj":"169","obj":"Gene:3690"},{"id":"A170","pred":"tao:has_database_id","subj":"170","obj":"Gene:54474"},{"id":"A171","pred":"tao:has_database_id","subj":"171","obj":"Gene:968"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T49","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T50","span":{"begin":21,"end":95},"obj":"Sentence"},{"id":"T51","span":{"begin":96,"end":508},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Immunohistochemistry\nDeparaffinized and rehydrated sections were used for immunohistochemistry. Organ sections were immersed in 10 mM sodium citrate, pH 6.0, and microwaved for antigen retrieval and stained on a BenchMark ULTRA system fully automated instrument (Roche) with an antibody directed against CD3 (2GV6; Ventana), CD4 (SP35; Ventana), CD8 (SP57; Ventana), CD15 (MMA; Ventana) CD26 (ab28340; Abcam), CD183 (1C6/CXCR3; BD Pharmigen), CD61 (ZfZ; Leica), CD20 (LZ6; Ventana), and CD68 (KP-1; Ventana)."}