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PMC:7543426 / 23093-23679 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T246 4-8 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T247 80-84 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T248 85-92 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T249 276-285 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T250 297-308 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T251 426-435 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T252 489-502 Body_part denotes T lymphocytes http://purl.org/sig/ont/fma/fma62870

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T126 4-8 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T127 80-84 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T128 426-435 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T167 328-343 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T168 334-343 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T169 412-421 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T170 468-476 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T171 544-554 Disease denotes vasculitis http://purl.obolibrary.org/obo/MONDO_0018882
T172 573-585 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T349 4-8 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T350 4-8 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T351 58-59 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T352 80-84 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T353 80-84 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T354 119-124 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T355 119-124 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T356 131-137 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T357 345-347 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T358 465-467 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
600 138-146 Species denotes patients Tax:9606
601 328-343 Disease denotes viral infection MESH:D001102
602 412-421 Disease denotes pneumonia MESH:D011014
603 468-476 Disease denotes COVID-19 MESH:C000657245
604 544-554 Disease denotes vasculitis MESH:D014657
605 573-585 Disease denotes inflammation MESH:D007249

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T78 412-421 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T79 544-554 Phenotype denotes vasculitis http://purl.obolibrary.org/obo/HP_0002633

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T32 328-343 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T33 573-585 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T270 0-199 Sentence denotes Our lung pathology findings were similar to those seen in a study of postmortem lung tissues from northern Italy of 33 males and 5 female patients, with an average age of 69 years (range 32–86) [17].
T271 200-349 Sentence denotes In addition, using electron microscopy we identified viral particles in the cytoplasm of type II pneumocytes—the main target of viral infection [18].
T272 350-586 Sentence denotes Interestingly, all the histological hallmarks of interstitial pneumonia and capillary damage were prominent in all 22 COVID-19 cases, with T lymphocytes being prominent in vascular infiltrates (vasculitis) and interstitial inflammation.