PMC:7543426 / 18015-19190
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T165 | 0-5 | Body_part | denotes | Liver | http://purl.org/sig/ont/fma/fma7197 |
| T166 | 37-42 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T167 | 66-76 | Body_part | denotes | parenchyma | http://purl.org/sig/ont/fma/fma45732 |
| T168 | 134-144 | Body_part | denotes | sinusoidal | http://purl.org/sig/ont/fma/fma63131 |
| T169 | 177-192 | Body_part | denotes | red blood cells | http://purl.org/sig/ont/fma/fma62845 |
| T170 | 187-192 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T171 | 202-216 | Body_part | denotes | space of Disse | http://purl.org/sig/ont/fma/fma63162 |
| T172 | 294-299 | Body_part | denotes | veins | http://purl.org/sig/ont/fma/fma63814 |
| T173 | 304-314 | Body_part | denotes | hepatocyte | http://purl.org/sig/ont/fma/fma14515 |
| T174 | 531-536 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T175 | 541-547 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T176 | 549-551 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T177 | 553-558 | Body_part | denotes | Liver | http://purl.org/sig/ont/fma/fma7197 |
| T178 | 559-565 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T179 | 572-582 | Body_part | denotes | sinusoidal | http://purl.org/sig/ont/fma/fma63131 |
| T180 | 615-630 | Body_part | denotes | red blood cells | http://purl.org/sig/ont/fma/fma62845 |
| T181 | 625-630 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T182 | 640-654 | Body_part | denotes | space of Disse | http://purl.org/sig/ont/fma/fma63162 |
| T183 | 677-681 | Body_part | denotes | vein | http://purl.org/sig/ont/fma/fma50723 |
| T184 | 694-696 | Body_part | denotes | A2 | http://purl.org/sig/ont/fma/fma66595 |
| T185 | 720-722 | Body_part | denotes | A3 | http://purl.org/sig/ont/fma/fma66599 |
| T186 | 783-785 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T187 | 787-789 | Body_part | denotes | A2 | http://purl.org/sig/ont/fma/fma66595 |
| T188 | 885-891 | Body_part | denotes | Kidney | http://purl.org/sig/ont/fma/fma7203 |
| T189 | 892-920 | Body_part | denotes | glomerular endothelial cells | http://purl.org/sig/ont/fma/fma70970 |
| T190 | 915-920 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T191 | 980-994 | Body_part | denotes | Bowman capsule | http://purl.org/sig/ont/fma/fma15626 |
| T192 | 987-994 | Body_part | denotes | capsule | http://purl.org/sig/ont/fma/fma85272 |
| T193 | 1132-1134 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T88 | 0-5 | Body_part | denotes | Liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T89 | 37-42 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T90 | 66-76 | Body_part | denotes | parenchyma | http://purl.obolibrary.org/obo/UBERON_0000353 |
| T91 | 181-186 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T92 | 531-536 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T93 | 541-547 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T94 | 553-558 | Body_part | denotes | Liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T95 | 559-565 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T96 | 619-624 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T97 | 677-681 | Body_part | denotes | vein | http://purl.obolibrary.org/obo/UBERON_0001638 |
| T98 | 885-891 | Body_part | denotes | Kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T99 | 987-994 | Body_part | denotes | capsule | http://purl.obolibrary.org/obo/UBERON_0003893 |
| T100 | 1120-1125 | Body_part | denotes | Scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T141 | 1019-1031 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T142 | 1041-1061 | Disease | denotes | glomerular sclerosis | http://purl.obolibrary.org/obo/MONDO_0000490 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T265 | 0-5 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | Liver |
| T266 | 0-5 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | Liver |
| T267 | 37-42 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T268 | 37-42 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T269 | 177-192 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | red blood cells |
| T270 | 225-228 | http://purl.obolibrary.org/obo/CLO_0001429 | denotes | 5A1 |
| T271 | 237-238 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T272 | 294-299 | http://purl.obolibrary.org/obo/UBERON_0001638 | denotes | veins |
| T273 | 294-299 | http://www.ebi.ac.uk/efo/EFO_0000816 | denotes | veins |
| T274 | 462-465 | http://purl.obolibrary.org/obo/CLO_0001429 | denotes | 5A1 |
| T275 | 531-536 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T276 | 531-536 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T277 | 541-547 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T278 | 541-547 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T279 | 541-547 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T280 | 553-558 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | Liver |
| T281 | 553-558 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | Liver |
| T282 | 615-630 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | red blood cells |
| T283 | 677-681 | http://purl.obolibrary.org/obo/UBERON_0001638 | denotes | vein |
| T284 | 677-681 | http://www.ebi.ac.uk/efo/EFO_0000816 | denotes | vein |
| T285 | 694-696 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | A2 |
| T286 | 720-722 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | A3 |
| T287 | 787-789 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | A2 |
| T288 | 885-891 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | Kidney |
| T289 | 885-891 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | Kidney |
| T290 | 885-891 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | Kidney |
| T291 | 903-920 | http://purl.obolibrary.org/obo/CL_0000115 | denotes | endothelial cells |
| T292 | 996-998 | http://purl.obolibrary.org/obo/CLO_0001812 | denotes | B3 |
| T293 | 1143-1145 | http://purl.obolibrary.org/obo/CLO_0001812 | denotes | B3 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 474 | 50-58 | Species | denotes | patients | Tax:9606 |
| 475 | 445-453 | Species | denotes | patients | Tax:9606 |
| 476 | 315-323 | Disease | denotes | necrosis | MESH:D009336 |
| 477 | 408-417 | Disease | denotes | steatosis | MESH:D005234 |
| 488 | 1091-1094 | Chemical | denotes | H&E | |
| 489 | 1096-1108 | Chemical | denotes | haematoxylin | MESH:D006416 |
| 490 | 1113-1118 | Chemical | denotes | eosin | MESH:D004801 |
| 491 | 702-718 | Disease | denotes | hepatic necrosis | MESH:D056486 |
| 492 | 817-840 | Disease | denotes | microvacuolar steatosis | MESH:D005234 |
| 493 | 885-902 | Disease | denotes | Kidney glomerular | MESH:D007674 |
| 494 | 1019-1031 | Disease | denotes | inflammation | MESH:D007249 |
| 495 | 1041-1061 | Disease | denotes | glomerular sclerosis | MESH:D007674 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T64 | 408-417 | Phenotype | denotes | steatosis | http://purl.obolibrary.org/obo/HP_0001397 |
| T65 | 702-718 | Phenotype | denotes | hepatic necrosis | http://purl.obolibrary.org/obo/HP_0002605 |
| T66 | 831-840 | Phenotype | denotes | steatosis | http://purl.obolibrary.org/obo/HP_0001397 |
| T67 | 1041-1061 | Phenotype | denotes | glomerular sclerosis | http://purl.obolibrary.org/obo/HP_0000096 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21 | 315-323 | http://purl.obolibrary.org/obo/GO_0070265 | denotes | necrosis |
| T22 | 315-323 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | necrosis |
| T23 | 315-323 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | necrosis |
| T24 | 315-323 | http://purl.obolibrary.org/obo/GO_0001906 | denotes | necrosis |
| T25 | 710-718 | http://purl.obolibrary.org/obo/GO_0070265 | denotes | necrosis |
| T26 | 710-718 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | necrosis |
| T27 | 710-718 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | necrosis |
| T28 | 710-718 | http://purl.obolibrary.org/obo/GO_0001906 | denotes | necrosis |
| T29 | 1019-1031 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T5 | 340-343 | GlycoEpitope | denotes | 5A3 | http://www.glycoepitope.jp/epitopes/AN0387 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T219 | 0-6 | Sentence | denotes | Liver. |
| T220 | 7-88 | Sentence | denotes | Macroscopic inspection of the liver of all patients showed parenchyma congestion. |
| T221 | 89-375 | Sentence | denotes | The main findings at histological level were sinusoidal congestion and extravasation of red blood cells into the space of Disse (Figure 5A1) and in a few cases this was associated with congestion of small veins and hepatocyte necrosis (Figure 5A2 and 5A3) and infiltration (Figure 5A4). |
| T222 | 376-494 | Sentence | denotes | Macrovacuolar and microvacuolar steatosis was seen mostly in group 2 patients (Figure 5A1, 5A2, and 5A4, and Table 3). |
| T223 | 495-504 | Sentence | denotes | Figure 5. |
| T224 | 506-548 | Sentence | denotes | Pathological findings in liver and kidney. |
| T225 | 549-655 | Sentence | denotes | A1, Liver tissue shows sinusoidal congestion and extravasation of red blood cells into the space of Disse. |
| T226 | 656-738 | Sentence | denotes | In some cases, small vein congestion (A2) and hepatic necrosis (A3) were reported. |
| T227 | 739-782 | Sentence | denotes | A4, Inflammatory infiltration was observed. |
| T228 | 783-880 | Sentence | denotes | A1, A2, and A4, Macrovacuolar and microvacuolar steatosis were observed in the majority of cases. |
| T229 | 881-934 | Sentence | denotes | B1, Kidney glomerular endothelial cells were swollen. |
| T230 | 935-995 | Sentence | denotes | B2, Fibrin deposit is visible underneath the Bowman capsule. |
| T231 | 996-1076 | Sentence | denotes | B3, Tubulointerstitial inflammation and (B4) glomerular sclerosis were observed. |
| T232 | 1077-1119 | Sentence | denotes | Abbreviation: H&E, haematoxylin and eosin. |
| T233 | 1120-1175 | Sentence | denotes | Scale bars: A1–A4, and B3, 50 µm; B1, B2, and B4, 14 µm |