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PMC:7543325 / 99-1663 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 684-689 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 1068-1072 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 684-689 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1068-1072 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 135-159 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 161-169 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 325-333 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 402-410 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 523-531 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 599-646 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T8 599-632 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 1244-1252 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1321-1368 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 10-20 http://purl.obolibrary.org/obo/BFO_0000030 denotes OBJECTIVES
T2 448-449 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 562-563 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 590-594 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T5 684-689 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T6 700-708 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T7 787-795 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T8 842-843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 983-984 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T10 994-996 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T11 1065-1067 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T12 1068-1072 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T13 1068-1072 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T14 1085-1087 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T15 1104-1106 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T16 1380-1381 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1507-1512 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
7 115-123 Species denotes patients Tax:9606
8 135-159 Disease denotes coronavirus disease 2019 MESH:C000657245
9 161-169 Disease denotes COVID-19 MESH:C000657245
18 202-210 Species denotes patients Tax:9606
19 344-351 Species denotes Patient Tax:9606
20 509-517 Species denotes patients Tax:9606
21 599-646 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
22 945-953 Species denotes patients Tax:9606
23 325-333 Disease denotes COVID-19 MESH:C000657245
24 402-410 Disease denotes COVID-19 MESH:C000657245
25 523-531 Disease denotes COVID-19 MESH:C000657245
31 997-1005 Species denotes patients Tax:9606
32 1183-1190 Species denotes patient Tax:9606
33 1216-1223 Species denotes patient Tax:9606
34 1141-1147 Disease denotes deaths MESH:D003643
35 1244-1252 Disease denotes COVID-19 MESH:C000657245
38 1321-1368 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
39 1489-1497 Disease denotes infected MESH:D007239

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-8 Sentence denotes Abstract
T4 10-20 Sentence denotes OBJECTIVES
T5 21-180 Sentence denotes The goal of this study was to describe the clinical features and outcomes of thoracic surgery patients during the coronavirus disease 2019 (COVID-19) pandemic.
T6 182-189 Sentence denotes METHODS
T7 190-343 Sentence denotes Thirty-five patients were treated at the 12 de Octubre University Hospital in Madrid between 1 March 2020 and 24 April 2020 during the COVID-19 pandemic.
T8 344-447 Sentence denotes Patient demographics, surgical procedures, complications, COVID-19 symptoms and outcomes were recorded.
T9 448-690 Sentence denotes A protocol was introduced to reduce the risk of operating on patients with COVID-19, including symptom screening, a polymerase chain reaction test for severe acute respiratory syndrome coronavirus 2 and computed tomography scans of the chest.
T10 691-912 Sentence denotes Surgical activity changed significantly during this time, from an initial period of near-normal activity, through an emergency-only period and finally a recovery period when some oncological surgical cases were restarted.
T11 913-973 Sentence denotes Selection criteria for surgical patients are also described.
T12 975-982 Sentence denotes RESULTS
T13 983-1051 Sentence denotes A total of 34 patients underwent surgery during the pandemic period.
T14 1052-1128 Sentence denotes We performed 22 lung resections (11 lobectomies and 11 sublobar resections).
T15 1129-1162 Sentence denotes No hospital deaths were recorded.
T16 1163-1261 Sentence denotes An elective surgery patient and an emergency surgery patient were diagnosed with COVID-19 (5.88%).
T17 1262-1307 Sentence denotes The former died within 30 days after surgery.
T18 1309-1320 Sentence denotes CONCLUSIONS
T19 1321-1435 Sentence denotes Severe acute respiratory syndrome coronavirus 2 represents a tremendous limitation for thoracic surgical practice.
T20 1436-1564 Sentence denotes Preoperative practices to exclude asymptomatic cases infected with the virus allowed us to perform thoracic surgical procedures.