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PMC:7543325 / 9802-16717 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T14 249-253 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 557-561 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 1168-1174 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T17 1400-1404 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T18 2677-2681 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T19 3645-3651 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T20 4209-4214 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T21 4224-4229 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 4980-4985 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 5210-5214 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 5640-5643 Body_part denotes rib http://purl.org/sig/ont/fma/fma7574
T25 6392-6407 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T26 6572-6577 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 249-253 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 557-561 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 1168-1174 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T18 1400-1404 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 2677-2681 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 3645-3651 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T21 4209-4214 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T22 4224-4229 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 4980-4985 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 5210-5214 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 5640-5643 Body_part denotes rib http://purl.obolibrary.org/obo/UBERON_0002228
T26 6403-6407 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T27 6572-6577 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T68 290-298 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 379-387 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 389-413 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T71 486-494 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 557-568 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T73 562-568 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T74 604-614 Disease denotes show fever http://purl.obolibrary.org/obo/MONDO_0025412
T75 656-664 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 724-732 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 829-837 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 840-849 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T79 1006-1012 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T80 1061-1073 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T81 1111-1148 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T82 1131-1148 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T83 1154-1162 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T84 1168-1182 Disease denotes kidney failure http://purl.obolibrary.org/obo/MONDO_0001106
T85 1191-1213 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T86 1541-1547 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T87 1574-1587 Disease denotes mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T88 1731-1750 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T89 1737-1750 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T90 1755-1767 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T91 1776-1795 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T92 1865-1871 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T93 1979-1987 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 1990-1999 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T95 2070-2078 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 2110-2116 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T97 2174-2182 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 2370-2378 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 2406-2414 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 2431-2439 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 2790-2793 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T102 3095-3101 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T103 3162-3171 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T104 3178-3191 Disease denotes Mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T105 3398-3406 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 3435-3443 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 3613-3632 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T108 3634-3637 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T109 3639-3658 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T110 3652-3658 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T111 3660-3668 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 3670-3694 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T113 3728-3736 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 3740-3787 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T115 3740-3773 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T116 3824-3832 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T117 4129-4137 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 4293-4301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 4304-4313 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T120 4576-4588 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T121 5026-5034 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T122 5140-5153 Disease denotes mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T123 5253-5262 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T124 5316-5324 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T125 5348-5356 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T126 5359-5369 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T127 5545-5553 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T128 5583-5591 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T129 5619-5625 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T130 5869-5871 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T131 5888-5896 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T132 5940-5942 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T133 5972-5980 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 5983-5992 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T135 6045-6047 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T136 6216-6224 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T137 6242-6244 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T138 6272-6274 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T139 6490-6505 Disease denotes renal carcinoma http://purl.obolibrary.org/obo/MONDO_0005206
T140 6496-6505 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T141 6507-6522 Disease denotes aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T142 6524-6543 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T143 6545-6557 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T144 6572-6585 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T145 6828-6836 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T146 6837-6846 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T79 17-25 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T80 249-253 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T81 249-253 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T82 338-346 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T83 425-427 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T84 555-556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 557-561 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T86 557-561 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T87 689-690 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T88 740-744 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 858-860 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T90 928-930 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T91 971-972 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 1075-1077 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 1168-1174 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T94 1168-1174 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T95 1168-1174 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T96 1298-1300 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T97 1400-1404 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T98 1400-1404 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T99 2473-2475 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T100 2477-2479 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T101 2581-2587 http://purl.obolibrary.org/obo/CLO_0001360 denotes 4 (12)
T102 2597-2601 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 2
T103 2648-2652 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T104 2677-2681 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T105 2677-2681 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T106 2772-2776 http://purl.obolibrary.org/obo/CLO_0051741 denotes c 1
T107 2795-2799 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T108 2894-2896 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T109 3156-3160 http://purl.obolibrary.org/obo/CLO_0002960 denotes f 1
T110 3209-3213 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T111 3231-3232 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 3292-3293 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 3446-3450 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T114 3645-3651 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T115 3645-3651 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T116 3645-3651 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T117 3995-3996 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 4159-4163 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T119 4209-4214 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T120 4224-4229 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T121 4680-4684 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T122 4898-4902 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T123 4980-4985 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T124 5210-5214 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T125 5210-5214 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T126 5446-5449 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T127 5492-5494 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T128 5640-5643 http://purl.obolibrary.org/obo/UBERON_0002228 denotes rib
T129 5855-5856 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 5876-5882 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T131 6057-6058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 6105-6108 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 6207-6211 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T134 6245-6248 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T135 6331-6332 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 6363-6364 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 6428-6429 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 6441-6442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 6507-6513 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T140 6572-6577 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T141 6572-6577 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T142 6572-6577 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T143 6572-6577 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 2926-2928 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T13 3609-3611 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T14 6292-6298 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T15 6466-6473 Chemical denotes radical http://purl.obolibrary.org/obo/CHEBI_26519
T16 6654-6656 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
215 290-298 Disease denotes COVID-19 MESH:C000657245
217 389-413 Disease denotes coronavirus disease 2019 MESH:C000657245
228 428-436 Species denotes patients Tax:9606
229 534-541 Species denotes patient Tax:9606
230 724-734 Species denotes SARS-CoV-2 Tax:2697049
231 813-820 Species denotes patient Tax:9606
232 486-494 Disease denotes COVID-19 MESH:C000657245
233 557-568 Disease denotes lung cancer MESH:D008175
234 609-614 Disease denotes fever MESH:D005334
235 619-639 Disease denotes respiratory symptoms MESH:D012818
236 656-664 Disease denotes COVID-19 MESH:C000657245
237 829-849 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
249 861-869 Species denotes patients Tax:9606
250 918-923 Species denotes women Tax:9606
251 936-939 Species denotes men Tax:9606
252 992-1000 Species denotes patients Tax:9606
253 1006-1012 Disease denotes cancer MESH:D009369
254 1061-1073 Disease denotes hypertension MESH:D006973
255 1091-1104 Disease denotes dyslipidaemia
256 1111-1148 Disease denotes chronic obstructive pulmonary disease MESH:D029424
257 1154-1162 Disease denotes diabetes MESH:D003920
258 1168-1182 Disease denotes kidney failure MESH:D051437
259 1191-1213 Disease denotes cardiovascular disease MESH:D002318
275 1635-1643 Species denotes patients Tax:9606
276 1693-1700 Species denotes patient Tax:9606
277 1840-1847 Species denotes patient Tax:9606
278 2005-2013 Species denotes patients Tax:9606
279 1532-1554 Disease denotes thoracic trauma damage MESH:D013896
280 1718-1726 Disease denotes bleeding MESH:D006470
281 1731-1750 Disease denotes acute renal failure MESH:D058186
282 1755-1767 Disease denotes pneumothorax MESH:D011030
283 1776-1795 Disease denotes atrial fibrillation MESH:D001281
284 1856-1871 Disease denotes thoracic trauma MESH:D013896
285 1887-1892 Disease denotes fever MESH:D005334
286 1897-1918 Disease denotes pulmonary infiltrates MESH:D017254
287 1984-1999 Disease denotes CoV-2 pneumonia MESH:C000657245
288 2070-2078 Disease denotes COVID-19 MESH:C000657245
289 2110-2116 Disease denotes cancer MESH:D009369
296 2370-2378 Disease denotes COVID-19 MESH:C000657245
297 2406-2414 Disease denotes COVID-19 MESH:C000657245
298 2431-2461 Disease denotes COVID-19 Yes Type T COVID MESH:C000657245
299 2926-2928 Disease denotes AF MESH:D001281
300 3095-3108 Disease denotes trauma damage MESH:D014947
301 3162-3171 Disease denotes Pneumonia MESH:D011014
304 2154-2162 Species denotes patients Tax:9606
305 2174-2182 Disease denotes COVID-19 MESH:C000657245
311 3295-3304 Disease denotes Mortality MESH:D003643
312 3358-3367 Disease denotes mortality MESH:D003643
313 3373-3378 Disease denotes COVID MESH:C000657245
314 3381-3390 Disease denotes mortality MESH:D003643
315 3398-3406 Disease denotes COVID-19 MESH:C000657245
317 3435-3445 Species denotes SARS-CoV-2 Tax:2697049
324 3728-3738 Species denotes SARS-CoV-2 Tax:2697049
325 3740-3787 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
326 3609-3611 Disease denotes AF MESH:D001281
327 3613-3632 Disease denotes atrial fibrillation MESH:D001281
328 3639-3658 Disease denotes acute kidney injury MESH:D058186
329 3670-3694 Disease denotes coronavirus disease 2019 MESH:C000657245
335 3811-3818 Species denotes patient Tax:9606
336 4098-4106 Species denotes patients Tax:9606
337 3824-3832 Disease denotes COVID-19 MESH:C000657245
338 4129-4137 Disease denotes COVID-19 MESH:C000657245
339 4293-4313 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
342 4576-4588 Disease denotes pneumothorax MESH:D011030
343 4632-4652 Disease denotes respiratory symptoms MESH:D012818
352 4871-4879 Species denotes patients Tax:9606
353 5229-5237 Species denotes patients Tax:9606
354 5293-5301 Species denotes patients Tax:9606
355 4919-4925 Disease denotes tumour MESH:D009369
356 5026-5034 Disease denotes COVID-19 MESH:C000657245
357 5253-5262 Disease denotes carcinoma MESH:D009369
358 5316-5324 Disease denotes COVID-19 MESH:C000657245
359 5348-5369 Disease denotes SARS-CoV-2 infections MESH:C000657245
374 5495-5503 Species denotes patients Tax:9606
375 5784-5791 Species denotes patient Tax:9606
376 5888-5898 Species denotes SARS-CoV-2 Tax:2697049
377 6012-6019 Species denotes patient Tax:9606
378 6097-6104 Species denotes patient Tax:9606
379 6216-6226 Species denotes SARS-CoV-2 Tax:2697049
380 6292-6298 Chemical denotes oxygen MESH:D010100
381 5545-5553 Disease denotes COVID-19 MESH:C000657245
382 5583-5591 Disease denotes COVID-19 MESH:C000657245
383 5619-5625 Disease denotes trauma MESH:D014947
384 5644-5675 Disease denotes fractures and right haemothorax MESH:D050723
385 5820-5825 Disease denotes fever MESH:D005334
386 5830-5851 Disease denotes pulmonary infiltrates MESH:D017254
387 5977-5992 Disease denotes CoV-2 pneumonia MESH:C000657245
398 6319-6326 Species denotes patient Tax:9606
399 6662-6669 Species denotes patient Tax:9606
400 6852-6859 Species denotes patient Tax:9606
401 6490-6505 Disease denotes renal carcinoma MESH:C538614
402 6507-6522 Disease denotes aortic aneurysm MESH:D001014
403 6524-6543 Disease denotes atrial fibrillation MESH:D001281
404 6545-6557 Disease denotes hypertension MESH:D006973
405 6562-6585 Disease denotes ischaemic heart disease MESH:D003324
406 6774-6794 Disease denotes respiratory symptoms MESH:D012818
407 6828-6846 Disease denotes COVID-19 pneumonia MESH:C000657245

TEST0

Id Subject Object Predicate Lexical cue
32951033-146-152-5118 4319-4321 ["32100485"] denotes 14
32951033-115-120-5119 4815-4816 ["32252979"] denotes 7

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T25 557-568 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T26 609-614 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 840-849 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T28 1006-1012 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T29 1061-1073 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 1111-1148 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T31 1191-1213 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 1731-1750 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T33 1755-1767 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T34 1776-1795 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T35 1887-1892 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T36 1897-1918 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T37 1990-1999 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T38 2110-2116 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T39 3162-3171 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T40 3613-3632 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T41 3639-3658 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T42 4304-4313 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T43 4576-4588 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T44 4919-4925 Phenotype denotes tumour http://purl.obolibrary.org/obo/HP_0002664
T45 5253-5262 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T46 5631-5653 Phenotype denotes multiple rib fractures http://purl.obolibrary.org/obo/HP_0006640
T47 5820-5825 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T48 5830-5851 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T49 5983-5992 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T50 6490-6505 Phenotype denotes renal carcinoma http://purl.obolibrary.org/obo/HP_0005584
T51 6507-6522 Phenotype denotes aortic aneurysm http://purl.obolibrary.org/obo/HP_0004942
T52 6524-6543 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T53 6545-6557 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T54 6837-6846 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

0_colil

Id Subject Object Predicate Lexical cue
32951033-32100485-5118 4319-4321 32100485 denotes 14
32951033-32252979-5119 4815-4816 32252979 denotes 7

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T106 0-7 Sentence denotes RESULTS
T107 8-135 Sentence denotes Surgical activity during the pandemic was dramatically reduced compared to that during the months before the pandemic (Fig. 2).
T108 136-245 Sentence denotes The number of elective surgical procedures during March was reduced to 20, 47% fewer than the previous month.
T109 246-308 Sentence denotes No lung transplant was performed during the COVID-19 pandemic.
T110 309-318 Sentence denotes Figure 2:
T111 320-378 Sentence denotes Elective surgical activity before and during the pandemic.
T112 379-414 Sentence denotes COVID-19: coronavirus disease 2019.
T113 415-529 Sentence denotes In total, 35 patients were referred for surgical procedures during the COVID-19 pandemic from 1 March to 24 April.
T114 530-688 Sentence denotes One patient admitted for a lung cancer staging mediastinoscopy started to show fever and respiratory symptoms compatible with COVID-19 h before the operation.
T115 689-808 Sentence denotes A diagnostic PCR was performed for SARS-CoV-2; the test results were positive; the surgical intervention was cancelled.
T116 809-850 Sentence denotes The patient died of SARS-CoV-2 pneumonia.
T117 851-970 Sentence denotes Of the 34 patients who finally underwent thoracic surgery, 12 were women and 22 were men; the average age was 60 years.
T118 971-1013 Sentence denotes A majority (25) were patients with cancer.
T119 1014-1218 Sentence denotes Among the comorbidities, the most frequent was hypertension (11) followed by dyslipidaemia (10), chronic obstructive pulmonary disease (5), diabetes (5), kidney failure (2) and cardiovascular disease (2).
T120 1219-1588 Sentence denotes The most frequent operations, described in Table 3, were anatomical lobectomy (11) and wedge segmentectomy (8); followed by mediastinoscopy (4), bullectomy (3), pleural biopsy (2), lung biopsy (2), extrapleural pneumonectomy (1), anatomical sublobar resection (1), and 2 emergency thoracotomies, 1 for control of thoracic trauma damage and another due to mediastinitis.
T121 1589-1630 Sentence denotes The average length of stay was 4.72 days.
T122 1631-1690 Sentence denotes The patients had the following postoperative complications:
T123 1691-1835 Sentence denotes 1 patient had non-surgical bleeding; 1, acute renal failure; 1, pneumothorax; and 1, atrial fibrillation, all of which were resolved favourably.
T124 1836-2000 Sentence denotes The patient who had thoracic trauma presented with fever and pulmonary infiltrates 7 days after the operation and was diagnosed with bilateral SARS-CoV-2 pneumonia.
T125 2001-2048 Sentence denotes Two patients died within 30 days after surgery:
T126 2049-2117 Sentence denotes 1 was diagnosed with COVID-19 and the other died of advanced cancer.
T127 2118-2126 Sentence denotes Table 3:
T128 2128-2191 Sentence denotes Outcomes of postoperative patients during the COVID-19 pandemic
T129 2192-2280 Sentence denotes Procedure N (%) Period Hospitalization (days) Postoperative complicationsa Deathsb
T130 2281-2323 Sentence denotes Prescreening period Post-screening period
T131 2324-2462 Sentence denotes 1–19 March 20 March– 5 April Diagnostic PCR COVID-19 6–24 April Screening PCR COVID-19 Diagnostic PCR COVID-19 Yes Type T COVID+
T132 2463-2544 Sentence denotes Total % 34 22 (65%) 2 (6%) (−) (+) 10 (29%) All negative 4.72 4 2 1
T133 2545-2615 Sentence denotes Elective surgery Mediastinoscopy 4 (12) 2 0 2 2 1 0 0 0
T134 2616-2676 Sentence denotes Pleural biopsy 2 (6) 1 0 1 1 5.5 1 Bleeding 1 0
T135 2677-2724 Sentence denotes Lung biopsy 2 (6) 2 0 0 0 4 0 0 0
T136 2725-2799 Sentence denotes Wedge segmentectomy 8 (24) 7 0 1 (9 days)c 1 1 3.9 1 AKI 1 1
T137 2800-2870 Sentence denotes Anatomical sublobar resection 1 (3) 1 0 0 0 None 3 0 0 0
T138 2871-2934 Sentence denotes Anatomical lobectomy 11 (32) 6 0 5 5 5.3 1 AF 0 0
T139 2935-2997 Sentence denotes Extrapleural pneumonectomy 1 (3) 1 0 0 0 8 0 0 0
T140 2998-3065 Sentence denotes Urgent surgeryd Bullectomy 3 (9) 1 2 1 0 0 8.3 0 0 0
T141 3066-3177 Sentence denotes Emergency surgerye Thoracic trauma damage control 1 (3) 1 0 1 (7 days)c 0 0 (−)f 1 Pneumonia 0 0
T142 3178-3230 Sentence denotes Mediastinitis 1 (3) 0 0 1 1 (−)f 0 0 0
T143 3231-3291 Sentence denotes a Early postoperative complications during hospitalization.
T144 3292-3408 Sentence denotes b Mortality within 30 days after surgery was divided in T (total mortality) and COVID+ (mortality due to COVID-19).
T145 3409-3473 Sentence denotes c Days after surgery PCR SARS-CoV-2 test results were positive.
T146 3474-3514 Sentence denotes d Urgent surgery: not life-threatening.
T147 3515-3554 Sentence denotes e Emergency surgery: life-threatening.
T148 3555-3608 Sentence denotes f Still hospitalized at the writing of this article.
T149 3609-3788 Sentence denotes AF: atrial fibrillation; AKI: acute kidney injury; COVID-19: coronavirus disease 2019; PCR: polymerase chain reaction; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.
T150 3789-3884 Sentence denotes On 1 March, the first patient with COVID-19 was diagnosed at 12 de Octubre University Hospital.
T151 3885-4075 Sentence denotes Elective surgical interventions were carried out regularly in the thoracic surgery department until 19 March: a total of 19 elective procedures, 1 urgent procedure and 1 emergency procedure.
T152 4076-4172 Sentence denotes During this period, 2 patients developed symptoms of COVID-19 and had positive PCR test results.
T153 4173-4323 Sentence denotes Diagnostic imaging was performed (1 chest CT and 1 chest X-ray); the results of both imaging texts were compatible with SARS-CoV-2 pneumonia [13, 14].
T154 4324-4458 Sentence denotes Given the severity of the pandemic at that time and the limited resources, our centre was forced to delay several surgical procedures.
T155 4459-4536 Sentence denotes Starting 20 March, we only performed urgent or emergency surgical procedures.
T156 4537-4614 Sentence denotes Only 2 procedures were carried out for pneumothorax with persistent air leak.
T157 4615-4699 Sentence denotes One started with respiratory symptoms but the results of the PCR test were negative.
T158 4700-4818 Sentence denotes Starting 6 April, we added non-delayed oncological surgical procedures according to previously described criteria [7].
T159 4819-5052 Sentence denotes In total, between 6 and 24 April, only asymptomatic patients with negative PCR test results who met tumour resectability criteria, completed quarantine, and had chest CT results that were not suspicious for COVID-19 were operated on.
T160 5053-5163 Sentence denotes We performed 9 electives surgical procedures and 1 emergency thoracotomy procedure for mediastinitis drainage.
T161 5164-5263 Sentence denotes More than 60% of the elective operations were lung resections in patients diagnosed with carcinoma.
T162 5264-5472 Sentence denotes During this last period, all patients underwent the COVID-19 screening protocol; no SARS-CoV-2 infections were detected before the operation and neither of them, as of this writing, has developed the disease.
T163 5473-5592 Sentence denotes In total, 2 of the 34 patients (5.88%) who underwent surgery during the COVID-19 pandemic were diagnosed with COVID-19.
T164 5593-5745 Sentence denotes One of the 2 had thoracic trauma with multiple rib fractures and right haemothorax and required an emergency thoracotomy for damage control on 15 March.
T165 5746-5993 Sentence denotes On the seventh postoperative day, the patient started showing symptoms of fever and pulmonary infiltrates on a CT scan, so he was tested with SARS-CoV-2 PCR, the results of which were positive; he was diagnosed with bilateral SARS-CoV-2 pneumonia.
T166 5994-6072 Sentence denotes The course of the patient’s disease was difficult: he required a tracheostomy.
T167 6073-6180 Sentence denotes As of this writing, the patient has been discharged from the intensive care unit but is still hospitalized.
T168 6181-6307 Sentence denotes The results of the latest test for SARS-CoV-2 were negative; he has been decannulated, and he does not require oxygen therapy.
T169 6308-6420 Sentence denotes The second patient was a 79-year-old man who underwent a wedge segmentectomy of the left upper lobe on 16 March.
T170 6421-6657 Sentence denotes He had a history of a right upper lobectomy, radical nephrectomy for renal carcinoma, aortic aneurysm, atrial fibrillation, hypertension and ischaemic heart disease, classified as American Society of Anesthesiologists classification IV.
T171 6658-6795 Sentence denotes The patient was discharged after the operation but returned to the emergency room on the 9th postoperative day with respiratory symptoms.
T172 6796-6847 Sentence denotes He was diagnosed with bilateral COVID-19 pneumonia.
T173 6848-6915 Sentence denotes The patient required hospital admission and died despite treatment.

2_test

Id Subject Object Predicate Lexical cue
32951033-32100485-28903669 4319-4321 32100485 denotes 14
32951033-32252979-28903670 4815-4816 32252979 denotes 7

MyTest

Id Subject Object Predicate Lexical cue
32951033-32100485-28903669 4319-4321 32100485 denotes 14
32951033-32252979-28903670 4815-4816 32252979 denotes 7

testtesttest

Id Subject Object Predicate Lexical cue uberon_id
T20 249-253 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T21 557-561 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 1168-1174 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T23 1400-1404 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 2677-2681 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 3645-3651 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T26 4209-4214 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T27 4224-4229 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T28 4980-4985 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 5210-5214 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T30 5640-5643 Body_part denotes rib http://purl.obolibrary.org/obo/UBERON_0002228
T31 6392-6407 Body_part denotes left upper lobe http://purl.obolibrary.org/obo/UBERON_0008952
T32 6572-6577 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230