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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 783-788 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 1167-1171 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 2222-2227 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T4 5539-5544 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 5940-5945 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T6 6041-6048 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T7 6581-6585 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T8 8043-8048 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T9 8053-8058 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T10 8507-8513 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T11 8688-8692 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T12 8761-8784 Body_part denotes Mediastinal lymph nodes http://purl.org/sig/ont/fma/fma12774
T13 9465-9470 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 10051-10055 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 10359-10363 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 10970-10976 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T17 11202-11206 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T18 12479-12483 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T19 13447-13453 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T20 14011-14016 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T21 14026-14031 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 14782-14787 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 15012-15016 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 15442-15445 Body_part denotes rib http://purl.org/sig/ont/fma/fma7574
T25 16194-16209 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T26 16374-16379 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T27 17029-17052 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T28 18736-18741 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T29 18777-18782 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T30 19024-19029 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T31 19349-19354 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T32 19531-19536 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T33 20577-20581 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T34 20644-20648 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T35 20756-20760 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 783-788 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1167-1171 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 2222-2227 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T4 5539-5544 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 5940-5945 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T6 6581-6585 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T7 7675-7691 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T8 8043-8048 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 8053-8058 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 8507-8513 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T11 8688-8692 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 8761-8784 Body_part denotes Mediastinal lymph nodes http://purl.obolibrary.org/obo/UBERON_0002524
T13 8773-8778 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T14 9465-9470 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 10051-10055 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 10359-10363 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 10970-10976 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T18 11202-11206 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 12479-12483 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 13447-13453 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T21 14011-14016 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T22 14026-14031 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 14782-14787 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 15012-15016 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 15442-15445 Body_part denotes rib http://purl.obolibrary.org/obo/UBERON_0002228
T26 16205-16209 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T27 16374-16379 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T28 17029-17052 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T29 17035-17052 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T30 18736-18741 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T31 18777-18782 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T32 19024-19029 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T33 19349-19354 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T34 19531-19536 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T35 20577-20581 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 20644-20648 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T37 20756-20760 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 71-79 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 234-258 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 260-268 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 424-432 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 501-509 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 622-630 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 698-745 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T8 698-731 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 1343-1351 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1420-1467 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1719-1766 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1719-1752 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T13 1768-1776 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 1935-1943 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2165-2200 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T16 2171-2200 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T17 2202-2213 Disease denotes arrhythmias http://purl.obolibrary.org/obo/MONDO_0007263
T18 2222-2235 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T19 2239-2258 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T20 2245-2258 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T21 2440-2448 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 2582-2590 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 2886-2894 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 2934-2942 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 3295-3304 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 3310-3318 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 3674-3682 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 3774-3782 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 4271-4279 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 4447-4459 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T31 4584-4593 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 4599-4607 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 4837-4845 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 4848-4858 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T35 5109-5117 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 5632-5640 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 5673-5681 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 5683-5707 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T39 5766-5774 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 5778-5825 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T41 5778-5811 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T42 6018-6026 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 6131-6147 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T44 6803-6809 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T45 7633-7640 Disease denotes empyema http://purl.obolibrary.org/obo/MONDO_0005242|http://purl.obolibrary.org/obo/MONDO_0018667
T47 7641-7648 Disease denotes abscess http://purl.obolibrary.org/obo/MONDO_0005227
T48 8031-8039 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 8403-8415 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T50 8450-8454 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T51 8464-8472 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T52 8482-8489 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T53 8499-8521 Disease denotes Chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T54 8507-8521 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T56 8530-8552 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T57 8688-8699 Disease denotes Lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T58 8693-8699 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T59 8740-8752 Disease denotes Mesothelioma http://purl.obolibrary.org/obo/MONDO_0005065
T60 8834-8838 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T61 8840-8877 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T62 8860-8877 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T63 9013-9021 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 9221-9229 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 9255-9263 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 9428-9436 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 9605-9613 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 10092-10100 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 10181-10189 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 10191-10215 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T71 10288-10296 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 10359-10370 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T73 10364-10370 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T74 10406-10416 Disease denotes show fever http://purl.obolibrary.org/obo/MONDO_0025412
T75 10458-10466 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 10526-10534 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 10631-10639 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 10642-10651 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T79 10808-10814 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T80 10863-10875 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T81 10913-10950 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T82 10933-10950 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T83 10956-10964 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T84 10970-10984 Disease denotes kidney failure http://purl.obolibrary.org/obo/MONDO_0001106
T85 10993-11015 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T86 11343-11349 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T87 11376-11389 Disease denotes mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T88 11533-11552 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T89 11539-11552 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T90 11557-11569 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T91 11578-11597 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T92 11667-11673 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T93 11781-11789 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 11792-11801 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T95 11872-11880 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 11912-11918 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T97 11976-11984 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 12172-12180 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 12208-12216 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 12233-12241 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 12592-12595 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T102 12897-12903 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T103 12964-12973 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T104 12980-12993 Disease denotes Mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T105 13200-13208 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 13237-13245 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 13415-13434 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T108 13436-13439 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T109 13441-13460 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T110 13454-13460 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T111 13462-13470 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 13472-13496 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T113 13530-13538 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 13542-13589 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T115 13542-13575 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T116 13626-13634 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T117 13931-13939 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 14095-14103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 14106-14115 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T120 14378-14390 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T121 14828-14836 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T122 14942-14955 Disease denotes mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T123 15055-15064 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T124 15118-15126 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T125 15150-15158 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T126 15161-15171 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T127 15347-15355 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T128 15385-15393 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T129 15421-15427 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T130 15671-15673 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T131 15690-15698 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T132 15742-15744 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T133 15774-15782 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 15785-15794 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T135 15847-15849 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T136 16018-16026 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T137 16044-16046 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T138 16074-16076 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T139 16292-16307 Disease denotes renal carcinoma http://purl.obolibrary.org/obo/MONDO_0005206
T140 16298-16307 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T141 16309-16324 Disease denotes aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T142 16326-16345 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T143 16347-16359 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T144 16374-16387 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T145 16630-16638 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T146 16639-16648 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T147 16813-16821 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T148 16977-16985 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T149 17035-17062 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T150 17053-17062 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T151 17177-17185 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T152 17431-17439 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T153 17659-17667 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T154 17910-17918 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T155 17980-17997 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T156 18087-18105 Disease denotes pulmonary diseases http://purl.obolibrary.org/obo/MONDO_0005275
T157 18147-18159 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T158 18390-18398 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T159 18557-18565 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T160 18857-18865 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T161 19082-19090 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T162 19136-19145 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T163 19151-19159 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T164 19585-19593 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T165 19850-19858 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T166 20165-20171 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T167 20331-20339 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T168 20577-20588 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T169 20582-20588 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T170 20685-20691 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T171 20865-20874 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T172 21287-21295 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T173 21379-21387 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T174 21544-21552 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T175 21700-21708 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T176 21926-21934 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T177 22076-22084 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T178 22175-22183 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T179 22186-22195 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T180 22405-22413 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T181 22562-22570 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T182 23898-23906 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T183 23907-23931 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T184 23985-23993 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T185 23996-24043 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 109-119 http://purl.obolibrary.org/obo/BFO_0000030 denotes OBJECTIVES
T2 547-548 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 661-662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 689-693 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T5 783-788 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T6 799-807 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T7 886-894 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T8 941-942 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1082-1083 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T10 1093-1095 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T11 1164-1166 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T12 1167-1171 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T13 1167-1171 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T14 1184-1186 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T15 1203-1205 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T16 1479-1480 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1606-1611 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 2222-2227 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T19 2222-2227 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T20 2222-2227 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T21 2222-2227 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T22 2310-2314 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T23 2531-2534 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 2597-2598 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 2792-2793 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 2803-2807 http://purl.obolibrary.org/obo/CLO_0001054 denotes 1244
T27 3222-3223 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3367-3375 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T29 3874-3882 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T30 3937-3945 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T31 3984-3985 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 4164-4172 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T33 4640-4647 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T34 4662-4663 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4717-4721 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T36 4777-4778 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 5263-5264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 5405-5407 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T39 5477-5478 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 5526-5530 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T41 5539-5544 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T42 5940-5945 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T43 5940-5945 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T44 5946-5957 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T45 6125-6130 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T46 6148-6153 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T47 6244-6245 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 6302-6303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 6827-6829 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T50 6996-6997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 7071-7072 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 7675-7691 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T53 8022-8026 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T54 8043-8048 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T55 8053-8058 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T56 8284-8290 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T57 8300-8304 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T58 8300-8304 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T59 8417-8419 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T60 8445-8447 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T61 8507-8513 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T62 8507-8513 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T63 8507-8513 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T64 8523-8528 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 (7)
T65 8554-8559 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 (7)
T66 8644-8649 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 (7)
T67 8688-8692 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T68 8688-8692 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T69 8754-8759 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 (7)
T70 8773-8784 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
T71 8879-8880 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T72 9011-9012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 9060-9065 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 9115-9120 http://purl.obolibrary.org/obo/CLO_0001053 denotes 12] 1
T75 9458-9463 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T76 9465-9470 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T77 9542-9543 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 9647-9652 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T79 9819-9827 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T80 10051-10055 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T81 10051-10055 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T82 10140-10148 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T83 10227-10229 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T84 10357-10358 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 10359-10363 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T86 10359-10363 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T87 10491-10492 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T88 10542-10546 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 10660-10662 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T90 10730-10732 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T91 10773-10774 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 10877-10879 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 10970-10976 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T94 10970-10976 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T95 10970-10976 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T96 11100-11102 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T97 11202-11206 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T98 11202-11206 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T99 12275-12277 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T100 12279-12281 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T101 12383-12389 http://purl.obolibrary.org/obo/CLO_0001360 denotes 4 (12)
T102 12399-12403 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 2
T103 12450-12454 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T104 12479-12483 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T105 12479-12483 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T106 12574-12578 http://purl.obolibrary.org/obo/CLO_0051741 denotes c 1
T107 12597-12601 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T108 12696-12698 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T109 12958-12962 http://purl.obolibrary.org/obo/CLO_0002960 denotes f 1
T110 13011-13015 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T111 13033-13034 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 13094-13095 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 13248-13252 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T114 13447-13453 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T115 13447-13453 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T116 13447-13453 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T117 13797-13798 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 13961-13965 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T119 14011-14016 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T120 14026-14031 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T121 14482-14486 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T122 14700-14704 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T123 14782-14787 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T124 15012-15016 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T125 15012-15016 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T126 15248-15251 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T127 15294-15296 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T128 15442-15445 http://purl.obolibrary.org/obo/UBERON_0002228 denotes rib
T129 15657-15658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 15678-15684 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T131 15859-15860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 15907-15910 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 16009-16013 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T134 16047-16050 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T135 16133-16134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 16165-16166 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 16230-16231 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 16243-16244 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 16309-16315 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T140 16374-16379 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T141 16374-16379 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T142 16374-16379 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T143 16374-16379 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T144 16767-16779 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T145 16828-16829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 16930-16942 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T147 17029-17052 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T148 17393-17394 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 17543-17544 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 17728-17731 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T151 17789-17792 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T152 17946-17951 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T153 18071-18073 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T154 18289-18291 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T155 18293-18295 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T156 18582-18583 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T157 18736-18741 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T158 18777-18782 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T159 18966-18967 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T160 19024-19029 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T161 19205-19210 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T162 19349-19354 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T163 19521-19526 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T164 19531-19536 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T165 19804-19806 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T166 19968-19969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T167 20022-20023 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 20035-20036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 20066-20067 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T170 20113-20114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 20446-20448 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T172 20484-20487 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T173 20577-20581 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T174 20577-20581 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T175 20664-20665 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 21035-21036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 21225-21226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 21390-21393 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T179 21465-21466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 21576-21578 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T181 21618-21621 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T182 21792-21800 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T183 22221-22224 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T184 22334-22341 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T185 22427-22428 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 23846-23850 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T187 23846-23850 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 6041-6048 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 6050-6060 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T3 6076-6083 Chemical denotes lactate http://purl.obolibrary.org/obo/CHEBI_24996
T4 7344-7346 Chemical denotes T3 http://purl.obolibrary.org/obo/CHEBI_18258
T5 7347-7349 Chemical denotes T4 http://purl.obolibrary.org/obo/CHEBI_18332|http://purl.obolibrary.org/obo/CHEBI_75602
T7 7431-7433 Chemical denotes N2 http://purl.obolibrary.org/obo/CHEBI_17997
T8 8577-8580 Chemical denotes ASA http://purl.obolibrary.org/obo/CHEBI_15365
T9 8614-8616 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T10 8640-8642 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T11 8793-8796 Chemical denotes ASA http://purl.obolibrary.org/obo/CHEBI_15365
T12 12728-12730 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T13 13411-13413 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T14 16094-16100 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T15 16268-16275 Chemical denotes radical http://purl.obolibrary.org/obo/CHEBI_26519
T16 16456-16458 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T17 20715-20722 Chemical denotes radical http://purl.obolibrary.org/obo/CHEBI_26519

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 51-59 Species denotes patients Tax:9606
3 71-79 Disease denotes COVID-19 MESH:C000657245
7 214-222 Species denotes patients Tax:9606
8 234-258 Disease denotes coronavirus disease 2019 MESH:C000657245
9 260-268 Disease denotes COVID-19 MESH:C000657245
18 301-309 Species denotes patients Tax:9606
19 443-450 Species denotes Patient Tax:9606
20 608-616 Species denotes patients Tax:9606
21 698-745 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
22 1044-1052 Species denotes patients Tax:9606
23 424-432 Disease denotes COVID-19 MESH:C000657245
24 501-509 Disease denotes COVID-19 MESH:C000657245
25 622-630 Disease denotes COVID-19 MESH:C000657245
31 1096-1104 Species denotes patients Tax:9606
32 1282-1289 Species denotes patient Tax:9606
33 1315-1322 Species denotes patient Tax:9606
34 1240-1246 Disease denotes deaths MESH:D003643
35 1343-1351 Disease denotes COVID-19 MESH:C000657245
38 1420-1467 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
39 1588-1596 Disease denotes infected MESH:D007239
42 1719-1766 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
43 1768-1778 Species denotes SARS-CoV-2 Tax:2697049
55 1921-1929 Species denotes patients Tax:9606
56 2095-2103 Species denotes patients Tax:9606
57 1935-1943 Disease denotes COVID-19 MESH:C000657245
58 1976-1981 Disease denotes fever MESH:D005334
59 1983-1991 Disease denotes dyspnoea MESH:D004417
60 1993-2002 Disease denotes dry cough MESH:D003371
61 2006-2013 Disease denotes myalgia MESH:D063806
62 2165-2200 Disease denotes acute respiratory distress syndrome MESH:D012128
63 2202-2213 Disease denotes arrhythmias MESH:D001145
64 2222-2235 Disease denotes heart failure MESH:D006333
65 2239-2258 Disease denotes acute renal failure MESH:D058186
69 2426-2434 Species denotes patients Tax:9606
70 2440-2448 Disease denotes COVID-19 MESH:C000657245
71 2513-2522 Disease denotes mortality MESH:D003643
76 2872-2880 Species denotes patients Tax:9606
77 2582-2590 Disease denotes COVID-19 MESH:C000657245
78 2886-2894 Disease denotes COVID-19 MESH:C000657245
79 2934-2942 Disease denotes COVID-19 MESH:C000657245
83 3310-3320 Species denotes SARS-CoV-2 Tax:2697049
84 3416-3424 Species denotes patients Tax:9606
85 3295-3304 Disease denotes infection MESH:D007239
87 3427-3435 Species denotes PATIENTS Tax:9606
92 3519-3527 Species denotes patients Tax:9606
93 3720-3728 Species denotes patients Tax:9606
94 3674-3682 Disease denotes COVID-19 MESH:C000657245
95 3774-3782 Disease denotes COVID-19 MESH:C000657245
103 4531-4539 Species denotes patients Tax:9606
104 4599-4609 Species denotes SARS-CoV-2 Tax:2697049
105 4679-4686 Species denotes patient Tax:9606
106 4271-4279 Disease denotes COVID-19 MESH:C000657245
107 4447-4459 Disease denotes pneumothorax MESH:D011030
108 4545-4565 Disease denotes respiratory symptoms MESH:D012818
109 4584-4593 Disease denotes infection MESH:D007239
117 4802-4810 Species denotes patients Tax:9606
118 4884-4892 Species denotes patients Tax:9606
119 5067-5074 Species denotes patient Tax:9606
120 5223-5231 Species denotes patients Tax:9606
121 5443-5451 Species denotes patients Tax:9606
122 4837-4858 Disease denotes SARS-CoV-2 infections MESH:C000657245
123 5109-5117 Disease denotes COVID-19 MESH:C000657245
129 5605-5613 Species denotes patients Tax:9606
130 5632-5642 Species denotes SARS-CoV-2 Tax:2697049
131 5766-5776 Species denotes SARS-CoV-2 Tax:2697049
132 5778-5825 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
133 5683-5707 Disease denotes coronavirus disease 2019 MESH:C000657245
139 6030-6048 Gene denotes C-reactive protein Gene:1401
140 5910-5917 Species denotes patient Tax:9606
141 6018-6028 Species denotes SARS-CoV-2 Tax:2697049
142 6125-6153 Species denotes human immunodeficiency virus Tax:12721
143 6050-6060 Chemical denotes creatinine MESH:D003404
148 6219-6227 Species denotes patients Tax:9606
149 6367-6375 Species denotes Patients Tax:9606
150 6460-6467 Species denotes patient Tax:9606
151 6246-6251 Disease denotes COVID MESH:C000657245
154 7021-7029 Species denotes patients Tax:9606
155 6803-6809 Disease denotes cancer MESH:D009369
160 7272-7279 Disease denotes tumours MESH:D009369
161 7356-7363 Disease denotes tumours MESH:D009369
162 7633-7648 Disease denotes empyema-abscess MESH:D004653
163 7675-7691 Disease denotes pleural effusion MESH:D010996
168 7736-7744 Species denotes patients Tax:9606
169 8031-8041 Species denotes SARS-CoV-2 Tax:2697049
170 7963-7983 Disease denotes respiratory symptoms MESH:D012818
171 8101-8106 Disease denotes death MESH:D003643
181 8403-8415 Disease denotes Hypertension MESH:D006973
182 8426-8439 Disease denotes Dyslipidaemia
183 8450-8454 Disease denotes COPD MESH:D029424
184 8464-8472 Disease denotes Diabetes MESH:D003920
185 8499-8521 Disease denotes Chronic kidney disease MESH:D051436
186 8530-8552 Disease denotes Cardiovascular disease MESH:D002318
187 8693-8699 Disease denotes cancer MESH:D009369
188 8710-8730 Disease denotes Pulmonary metastases MESH:D009362
189 8740-8752 Disease denotes Mesothelioma MESH:D008654
191 8178-8186 Species denotes patients Tax:9606
194 8834-8838 Disease denotes COPD MESH:D029424
195 8840-8877 Disease denotes chronic obstructive pulmonary disease MESH:D029424
203 9312-9319 Species denotes patient Tax:9606
204 9378-9385 Species denotes patient Tax:9606
205 9013-9021 Disease denotes COVID-19 MESH:C000657245
206 9221-9229 Disease denotes COVID-19 MESH:C000657245
207 9230-9250 Disease denotes respiratory symptoms MESH:D012818
208 9255-9263 Disease denotes COVID-19 MESH:C000657245
209 9428-9436 Disease denotes COVID-19 MESH:C000657245
212 9647-9652 Species denotes human Tax:9606
213 9605-9613 Disease denotes COVID-19 MESH:C000657245
215 10092-10100 Disease denotes COVID-19 MESH:C000657245
217 10191-10215 Disease denotes coronavirus disease 2019 MESH:C000657245
228 10230-10238 Species denotes patients Tax:9606
229 10336-10343 Species denotes patient Tax:9606
230 10526-10536 Species denotes SARS-CoV-2 Tax:2697049
231 10615-10622 Species denotes patient Tax:9606
232 10288-10296 Disease denotes COVID-19 MESH:C000657245
233 10359-10370 Disease denotes lung cancer MESH:D008175
234 10411-10416 Disease denotes fever MESH:D005334
235 10421-10441 Disease denotes respiratory symptoms MESH:D012818
236 10458-10466 Disease denotes COVID-19 MESH:C000657245
237 10631-10651 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
249 10663-10671 Species denotes patients Tax:9606
250 10720-10725 Species denotes women Tax:9606
251 10738-10741 Species denotes men Tax:9606
252 10794-10802 Species denotes patients Tax:9606
253 10808-10814 Disease denotes cancer MESH:D009369
254 10863-10875 Disease denotes hypertension MESH:D006973
255 10893-10906 Disease denotes dyslipidaemia
256 10913-10950 Disease denotes chronic obstructive pulmonary disease MESH:D029424
257 10956-10964 Disease denotes diabetes MESH:D003920
258 10970-10984 Disease denotes kidney failure MESH:D051437
259 10993-11015 Disease denotes cardiovascular disease MESH:D002318
275 11437-11445 Species denotes patients Tax:9606
276 11495-11502 Species denotes patient Tax:9606
277 11642-11649 Species denotes patient Tax:9606
278 11807-11815 Species denotes patients Tax:9606
279 11334-11356 Disease denotes thoracic trauma damage MESH:D013896
280 11520-11528 Disease denotes bleeding MESH:D006470
281 11533-11552 Disease denotes acute renal failure MESH:D058186
282 11557-11569 Disease denotes pneumothorax MESH:D011030
283 11578-11597 Disease denotes atrial fibrillation MESH:D001281
284 11658-11673 Disease denotes thoracic trauma MESH:D013896
285 11689-11694 Disease denotes fever MESH:D005334
286 11699-11720 Disease denotes pulmonary infiltrates MESH:D017254
287 11786-11801 Disease denotes CoV-2 pneumonia MESH:C000657245
288 11872-11880 Disease denotes COVID-19 MESH:C000657245
289 11912-11918 Disease denotes cancer MESH:D009369
296 12172-12180 Disease denotes COVID-19 MESH:C000657245
297 12208-12216 Disease denotes COVID-19 MESH:C000657245
298 12233-12263 Disease denotes COVID-19 Yes Type T COVID MESH:C000657245
299 12728-12730 Disease denotes AF MESH:D001281
300 12897-12910 Disease denotes trauma damage MESH:D014947
301 12964-12973 Disease denotes Pneumonia MESH:D011014
304 11956-11964 Species denotes patients Tax:9606
305 11976-11984 Disease denotes COVID-19 MESH:C000657245
311 13097-13106 Disease denotes Mortality MESH:D003643
312 13160-13169 Disease denotes mortality MESH:D003643
313 13175-13180 Disease denotes COVID MESH:C000657245
314 13183-13192 Disease denotes mortality MESH:D003643
315 13200-13208 Disease denotes COVID-19 MESH:C000657245
317 13237-13247 Species denotes SARS-CoV-2 Tax:2697049
324 13530-13540 Species denotes SARS-CoV-2 Tax:2697049
325 13542-13589 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
326 13411-13413 Disease denotes AF MESH:D001281
327 13415-13434 Disease denotes atrial fibrillation MESH:D001281
328 13441-13460 Disease denotes acute kidney injury MESH:D058186
329 13472-13496 Disease denotes coronavirus disease 2019 MESH:C000657245
335 13613-13620 Species denotes patient Tax:9606
336 13900-13908 Species denotes patients Tax:9606
337 13626-13634 Disease denotes COVID-19 MESH:C000657245
338 13931-13939 Disease denotes COVID-19 MESH:C000657245
339 14095-14115 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
342 14378-14390 Disease denotes pneumothorax MESH:D011030
343 14434-14454 Disease denotes respiratory symptoms MESH:D012818
352 14673-14681 Species denotes patients Tax:9606
353 15031-15039 Species denotes patients Tax:9606
354 15095-15103 Species denotes patients Tax:9606
355 14721-14727 Disease denotes tumour MESH:D009369
356 14828-14836 Disease denotes COVID-19 MESH:C000657245
357 15055-15064 Disease denotes carcinoma MESH:D009369
358 15118-15126 Disease denotes COVID-19 MESH:C000657245
359 15150-15171 Disease denotes SARS-CoV-2 infections MESH:C000657245
374 15297-15305 Species denotes patients Tax:9606
375 15586-15593 Species denotes patient Tax:9606
376 15690-15700 Species denotes SARS-CoV-2 Tax:2697049
377 15814-15821 Species denotes patient Tax:9606
378 15899-15906 Species denotes patient Tax:9606
379 16018-16028 Species denotes SARS-CoV-2 Tax:2697049
380 16094-16100 Chemical denotes oxygen MESH:D010100
381 15347-15355 Disease denotes COVID-19 MESH:C000657245
382 15385-15393 Disease denotes COVID-19 MESH:C000657245
383 15421-15427 Disease denotes trauma MESH:D014947
384 15446-15477 Disease denotes fractures and right haemothorax MESH:D050723
385 15622-15627 Disease denotes fever MESH:D005334
386 15632-15653 Disease denotes pulmonary infiltrates MESH:D017254
387 15779-15794 Disease denotes CoV-2 pneumonia MESH:C000657245
398 16121-16128 Species denotes patient Tax:9606
399 16464-16471 Species denotes patient Tax:9606
400 16654-16661 Species denotes patient Tax:9606
401 16292-16307 Disease denotes renal carcinoma MESH:C538614
402 16309-16324 Disease denotes aortic aneurysm MESH:D001014
403 16326-16345 Disease denotes atrial fibrillation MESH:D001281
404 16347-16359 Disease denotes hypertension MESH:D006973
405 16364-16387 Disease denotes ischaemic heart disease MESH:D003324
406 16576-16596 Disease denotes respiratory symptoms MESH:D012818
407 16630-16648 Disease denotes COVID-19 pneumonia MESH:C000657245
414 17186-17194 Species denotes patients Tax:9606
415 16813-16821 Disease denotes COVID-19 MESH:C000657245
416 16977-16985 Disease denotes COVID-19 MESH:C000657245
417 17019-17024 Disease denotes fever MESH:D005334
418 17029-17062 Disease denotes lower respiratory tract infection MESH:D012141
419 17177-17185 Disease denotes COVID-19 MESH:C000657245
423 17431-17441 Species denotes SARS-CoV-2 Tax:2697049
424 17645-17653 Species denotes patients Tax:9606
425 17659-17667 Disease denotes COVID-19 MESH:C000657245
430 17910-17918 Disease denotes COVID-19 MESH:C000657245
431 17980-17997 Disease denotes pulmonary disease MESH:D008171
432 18087-18105 Disease denotes pulmonary diseases MESH:D008171
433 18147-18159 Disease denotes pneumothorax MESH:D011030
435 18390-18398 Disease denotes COVID-19 MESH:C000657245
439 18530-18538 Species denotes patients Tax:9606
440 18653-18661 Species denotes patients Tax:9606
441 18557-18565 Disease denotes COVID-19 MESH:C000657245
444 18843-18851 Species denotes patients Tax:9606
445 18857-18865 Disease denotes COVID-19 MESH:C000657245
449 19151-19161 Species denotes SARS-CoV-2 Tax:2697049
450 19082-19090 Disease denotes COVID-19 MESH:C000657245
451 19136-19145 Disease denotes infection MESH:D007239
455 19374-19382 Species denotes patients Tax:9606
456 19442-19461 Disease denotes coronavirus disease MESH:D018352
457 19585-19593 Disease denotes COVID-19 MESH:C000657245
465 19807-19815 Species denotes patients Tax:9606
466 19891-19898 Species denotes patient Tax:9606
467 19959-19966 Species denotes patient Tax:9606
468 20209-20217 Species denotes patients Tax:9606
469 19850-19858 Disease denotes COVID-19 MESH:C000657245
470 20165-20171 Disease denotes trauma MESH:D014947
471 20331-20339 Disease denotes COVID-19 MESH:C000657245
485 20563-20571 Species denotes patients Tax:9606
486 20650-20658 Species denotes patients Tax:9606
487 20896-20904 Species denotes patients Tax:9606
488 21008-21016 Species denotes patients Tax:9606
489 20455-20474 Disease denotes coronavirus disease MESH:D018352
490 20577-20588 Disease denotes lung cancer MESH:D008175
491 20674-20679 Disease denotes death MESH:D003643
492 20685-20691 Disease denotes cancer MESH:D009369
493 20774-20779 Disease denotes death MESH:D003643
494 20813-20832 Disease denotes coronavirus disease MESH:D018352
495 20865-20874 Disease denotes infection MESH:D007239
496 21022-21029 Disease denotes cancers MESH:D009369
497 21287-21295 Disease denotes COVID-19 MESH:C000657245
500 21379-21389 Species denotes SARS-CoV-2 Tax:2697049
501 21544-21552 Disease denotes COVID-19 MESH:C000657245
504 21686-21694 Species denotes patients Tax:9606
505 21700-21708 Disease denotes COVID-19 MESH:C000657245
511 22018-22026 Species denotes patients Tax:9606
512 22151-22159 Species denotes patients Tax:9606
513 21926-21934 Disease denotes COVID-19 MESH:C000657245
514 22076-22084 Disease denotes COVID-19 MESH:C000657245
515 22175-22195 Disease denotes SARS-CoV-2 infection MESH:C000657245
520 22405-22415 Species denotes SARS-CoV-2 Tax:2697049
521 22539-22547 Species denotes patients Tax:9606
522 22562-22572 Species denotes SARS-CoV-2 Tax:2697049
523 22548-22556 Disease denotes infected MESH:D007239
527 23417-23441 Chemical denotes Vicente Diaz-Hellín Gude
528 23218-23245 Disease denotes José Alberto García Salcedo MESH:C537228
529 23503-23509 Disease denotes García MESH:C536767
627 23898-23906 Disease denotes COVID-19 MESH:C000657245
629 23907-23931 Disease denotes Coronavirus disease 2019 MESH:C000657245

TEST0

Id Subject Object Predicate Lexical cue
32951033-183-188-5111 1861-1862 ["31978945"] denotes 1
32951033-232-237-5112 2310-2311 ["32081636"] denotes 3
32951033-235-240-5113 2313-2314 ["32007143"] denotes 4
32951033-133-138-5114 2450-2451 ["32292899"] denotes 5
32951033-101-106-5115 5023-5024 ["32252979"] denotes 7
32951033-134-139-5116 5532-5533 ["32232230"] denotes 9
32951033-148-154-5117 9115-9117 ["32213507"] denotes 12
32951033-146-152-5118 14121-14123 ["32100485"] denotes 14
32951033-115-120-5119 14617-14618 ["32252979"] denotes 7
32951033-150-156-5120 16880-16882 ["32112977"] denotes 15
32951033-154-160-5121 16884-16886 ["32320003"] denotes 16
32951033-237-243-5122 17226-17228 ["32112977"] denotes 15
32951033-109-115-5123 18071-18073 ["32123994"] denotes 18
32951033-53-59-5124 18513-18515 ["32221117"] denotes 20
32951033-57-63-5125 18517-18519 ["32171076"] denotes 21
32951033-26-32-5126 18772-18774 ["32100485"] denotes 14
32951033-78-84-5127 20624-20626 ["32285279"] denotes 23
32951033-119-125-5128 21484-21486 ["32178769"] denotes 26

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1976-1981 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 1983-1991 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T3 1993-2002 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T4 2006-2013 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T5 2171-2191 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T6 2202-2213 Phenotype denotes arrhythmias http://purl.obolibrary.org/obo/HP_0011675
T7 2215-2220 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T8 2222-2235 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T9 2239-2258 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T10 4447-4459 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T11 6131-6147 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T12 6741-6749 Phenotype denotes Oncology http://purl.obolibrary.org/obo/HP_0002664
T13 6803-6809 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T14 7252-7260 Phenotype denotes oncology http://purl.obolibrary.org/obo/HP_0002664
T15 7641-7648 Phenotype denotes abscess http://purl.obolibrary.org/obo/HP_0025615
T16 7675-7691 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T17 8403-8415 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T18 8450-8454 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T19 8482-8489 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T20 8499-8521 Phenotype denotes Chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T21 8530-8552 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T22 8688-8699 Phenotype denotes Lung cancer http://purl.obolibrary.org/obo/HP_0100526
T23 8834-8838 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T24 8840-8877 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T25 10359-10370 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T26 10411-10416 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 10642-10651 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T28 10808-10814 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T29 10863-10875 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 10913-10950 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T31 10993-11015 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 11533-11552 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T33 11557-11569 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T34 11578-11597 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T35 11689-11694 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T36 11699-11720 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T37 11792-11801 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T38 11912-11918 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T39 12964-12973 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T40 13415-13434 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T41 13441-13460 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T42 14106-14115 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T43 14378-14390 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T44 14721-14727 Phenotype denotes tumour http://purl.obolibrary.org/obo/HP_0002664
T45 15055-15064 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T46 15433-15455 Phenotype denotes multiple rib fractures http://purl.obolibrary.org/obo/HP_0006640
T47 15622-15627 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T48 15632-15653 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T49 15785-15794 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T50 16292-16307 Phenotype denotes renal carcinoma http://purl.obolibrary.org/obo/HP_0005584
T51 16309-16324 Phenotype denotes aortic aneurysm http://purl.obolibrary.org/obo/HP_0004942
T52 16326-16345 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T53 16347-16359 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T54 16639-16648 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T55 17019-17024 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T56 17029-17062 Phenotype denotes lower respiratory tract infection http://purl.obolibrary.org/obo/HP_0002783
T57 18147-18159 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T58 18161-18178 Phenotype denotes pneumomediastinum http://purl.obolibrary.org/obo/HP_0025421
T59 20577-20588 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T60 20685-20691 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664

0_colil

Id Subject Object Predicate Lexical cue
32951033-31978945-5111 1861-1862 31978945 denotes 1
32951033-32081636-5112 2310-2311 32081636 denotes 3
32951033-32007143-5113 2313-2314 32007143 denotes 4
32951033-32292899-5114 2450-2451 32292899 denotes 5
32951033-32252979-5115 5023-5024 32252979 denotes 7
32951033-32232230-5116 5532-5533 32232230 denotes 9
32951033-32213507-5117 9115-9117 32213507 denotes 12
32951033-32100485-5118 14121-14123 32100485 denotes 14
32951033-32252979-5119 14617-14618 32252979 denotes 7
32951033-32112977-5120 16880-16882 32112977 denotes 15
32951033-32320003-5121 16884-16886 32320003 denotes 16
32951033-32112977-5122 17226-17228 32112977 denotes 15
32951033-32123994-5123 18071-18073 32123994 denotes 18
32951033-32221117-5124 18513-18515 32221117 denotes 20
32951033-32171076-5125 18517-18519 32171076 denotes 21
32951033-32100485-5126 18772-18774 32100485 denotes 14
32951033-32285279-5127 20624-20626 32285279 denotes 23
32951033-32178769-5128 21484-21486 32178769 denotes 26

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-88 Sentence denotes Clinical features and outcomes of thoracic surgery patients during the COVID-19 pandemic
T2 90-98 Sentence denotes Abstract
T3 99-107 Sentence denotes Abstract
T4 109-119 Sentence denotes OBJECTIVES
T5 120-279 Sentence denotes The goal of this study was to describe the clinical features and outcomes of thoracic surgery patients during the coronavirus disease 2019 (COVID-19) pandemic.
T6 281-288 Sentence denotes METHODS
T7 289-442 Sentence denotes Thirty-five patients were treated at the 12 de Octubre University Hospital in Madrid between 1 March 2020 and 24 April 2020 during the COVID-19 pandemic.
T8 443-546 Sentence denotes Patient demographics, surgical procedures, complications, COVID-19 symptoms and outcomes were recorded.
T9 547-789 Sentence denotes A protocol was introduced to reduce the risk of operating on patients with COVID-19, including symptom screening, a polymerase chain reaction test for severe acute respiratory syndrome coronavirus 2 and computed tomography scans of the chest.
T10 790-1011 Sentence denotes Surgical activity changed significantly during this time, from an initial period of near-normal activity, through an emergency-only period and finally a recovery period when some oncological surgical cases were restarted.
T11 1012-1072 Sentence denotes Selection criteria for surgical patients are also described.
T12 1074-1081 Sentence denotes RESULTS
T13 1082-1150 Sentence denotes A total of 34 patients underwent surgery during the pandemic period.
T14 1151-1227 Sentence denotes We performed 22 lung resections (11 lobectomies and 11 sublobar resections).
T15 1228-1261 Sentence denotes No hospital deaths were recorded.
T16 1262-1360 Sentence denotes An elective surgery patient and an emergency surgery patient were diagnosed with COVID-19 (5.88%).
T17 1361-1406 Sentence denotes The former died within 30 days after surgery.
T18 1408-1419 Sentence denotes CONCLUSIONS
T19 1420-1534 Sentence denotes Severe acute respiratory syndrome coronavirus 2 represents a tremendous limitation for thoracic surgical practice.
T20 1535-1663 Sentence denotes Preoperative practices to exclude asymptomatic cases infected with the virus allowed us to perform thoracic surgical procedures.
T21 1665-1677 Sentence denotes INTRODUCTION
T22 1678-1867 Sentence denotes In December 2019, an outbreak of the new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) occurred in Wuhan and spread rapidly throughout the rest of China and the world [1, 2].
T23 1868-2068 Sentence denotes According to data analysed in China, the majority of patients with COVID-19 developed mild symptoms such as fever, dyspnoea, dry cough or myalgia, which would mostly self-resolve without intervention.
T24 2069-2316 Sentence denotes However, up to 20% of the patients admitted to hospitals developed severe complications such as acute respiratory distress syndrome, arrhythmias, shock, heart failure or acute renal failure, which required admission to intensive care units [3, 4].
T25 2317-2523 Sentence denotes There is little evidence regarding the risk of complications when performing thoracic surgical procedures on patients with COVID-19 [5], although it may confer greater postoperative morbidity and mortality.
T26 2524-2704 Sentence denotes Madrid has been one of the world’s areas most impacted by COVID-19, with a total cumulative incidence rate in our hospital’s area of 857 confirmed cases per 100 000 population [6].
T27 2705-2956 Sentence denotes Specifically, in 12 de Octubre University Hospital at the time of the pandemic's peak, a total of 1244 hospital beds and 112 intensive care unit beds were occupied by patients with COVID-19, and more than 9000 confirmed cases of COVID-19 were treated.
T28 2957-3084 Sentence denotes In this context, the thoracic surgery department was forced to change its routine surgical practice to overcome this challenge.
T29 3085-3321 Sentence denotes The purpose of this article was to analyse the surgical procedures carried out in the thoracic surgery department during the pandemic in a large tertiary hospital and the possible complications associated with infection with SARS-CoV-2.
T30 3322-3425 Sentence denotes We also describe the changes in our surgical activity and the selection criteria for surgical patients.
T31 3427-3447 Sentence denotes PATIENTS AND METHODS
T32 3449-3692 Sentence denotes This observational and retrospective study reviews clinical data from patients who had surgical procedures performed by members of the thoracic surgery department of the 12 de Octubre University Hospital in Madrid during the COVID-19 pandemic.
T33 3693-3849 Sentence denotes The study analysed all the patients referred for surgery since the first case of COVID-19 was confirmed in our hospital, from 1 March 2020 to 24 April 2020.
T34 3850-4077 Sentence denotes We defined 3 periods of activity during the pandemic: an initial period of near-normal activity, an emergency-only period and finally a recovery period when the surgical staff resumed performing some oncological surgical cases.
T35 4078-4207 Sentence denotes During the first period, from 1 to 19 March, we continued with our scheduled surgical activity practically without modifications.
T36 4208-4361 Sentence denotes After 20 March, hospital capacity was surpassed because of the COVID-19 pandemic, which led to the limitation of surgical procedures to emergencies only.
T37 4362-4485 Sentence denotes From 20 March to 5 April, the second period, only 2 operations were carried out: for pneumothorax with persistent air leak.
T38 4486-4658 Sentence denotes Until this date, in our hospital, only those patients with respiratory symptoms were screened for infection with SARS-CoV-2 because of the limitations of testing resources.
T39 4659-4730 Sentence denotes As a result, only 1 patient was screened and had negative test results.
T40 4731-4921 Sentence denotes After 5 April, the third period, we developed a screening protocol for patients who were asymptomatic for SARS-CoV-2 infections, described in Fig. 1, in patients who were to undergo surgery.
T41 4922-5029 Sentence denotes We established several measures before and during admission as well as after the surgical procedure [7, 8].
T42 5030-5127 Sentence denotes Before admission, we questioned each patient by telephone to detect those with COVID-19 symptoms.
T43 5128-5202 Sentence denotes We also requested information about their exposure and confinement status.
T44 5203-5397 Sentence denotes We recommended that patients record their temperature twice a day, comply with confinement, avoid exposure to family members and go to the hospital the day of the operation with mask and gloves.
T45 5398-5570 Sentence denotes In the 48 h prior to the surgical procedure, patients went to the hospital for a nasopharyngeal polymerase chain reaction (PCR) test [9] and chest computed tomography (CT).
T46 5571-5580 Sentence denotes Figure 1:
T47 5582-5672 Sentence denotes Algorithm of screening patients with asymptomatic SARS-CoV-2 disease referred for surgery.
T48 5673-5826 Sentence denotes COVID-19: coronavirus disease 2019; CT: computed tomography; PCR: polymerase chain reaction; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.
T49 5827-6188 Sentence denotes On the day of admission, meaning 1 day before the operation, we confirmed that the patient was asymptomatic, and blood testing was requested with specific parameters for the detection of the SARS-CoV-2: C-reactive protein, creatinine kinase levels, lactate dehydrogenase levels, ferritin, D-dimer, human immunodeficiency virus and complement component serology.
T50 6189-6277 Sentence denotes After the surgical procedure, patients were treated in a COVID-free intensive care unit.
T51 6278-6366 Sentence denotes Once they were moved to a hospital room, contact and droplet precautions were performed.
T52 6367-6433 Sentence denotes Patients were also placed in an individual room whenever possible.
T53 6434-6594 Sentence denotes Physical contact with the patient was avoided or minimized by reducing the number of professional staff during each visit and by always performing hand hygiene.
T54 6595-6639 Sentence denotes Visits from family members were not allowed.
T55 6640-6872 Sentence denotes We based the criteria for surgical intervention on the guidelines of the European Society of Medical Oncology [10] and on the treatment protocols for bronchogenic cancer in our hospital [11], both of which are summarized in Table 1.
T56 6873-7007 Sentence denotes Non-surgical treatment and follow-up of nodules <2 cm and of ground-glass opacifications were chosen because they were not a priority.
T57 7008-7157 Sentence denotes Finally, all patients likely to have surgery were discussed in a multidisciplinary clinical session using redefined guidelines for surgical priority.
T58 7158-7166 Sentence denotes Table 1:
T59 7168-7219 Sentence denotes Eligibility criteria for surgical intervention [10]
T60 7220-7260 Sentence denotes Priorities in thoracic surgical oncology
T61 7261-7332 Sentence denotes T2NO solid tumours naïve from treatment or after induction chemotherapy
T62 7333-7416 Sentence denotes Resectable T3/T4 solid tumours naïve from treatment or after induction chemotherapy
T63 7417-7494 Sentence denotes Resectable N1/N2 disease naïve from treatment or after induction chemotherapy
T64 7495-7598 Sentence denotes Diagnostic procedure such as mediastinoscopy/thoracoscopy/pleural biopsy for diagnostic/staging work-up
T65 7599-7618 Sentence denotes Persistent air leak
T66 7619-7648 Sentence denotes Evacuation of empyema-abscess
T67 7649-8151 Sentence denotes Drainage ± pleurodesis of pleural effusion The following variables were collected from patients who had surgery, some of which are included in Table 2: age, sex, comorbidities, ethnic origin, physical status and oncological diagnosis, procedure, postoperative complications, length of hospital stay, postoperative respiratory symptoms, time from operation to symptoms, PCR test for SARS-CoV-2, chest CT, chest X-ray, need for hospital re-admission and death within 30 days after the surgical procedure.
T68 8152-8160 Sentence denotes Table 2:
T69 8162-8223 Sentence denotes Demographics of patients who had elective surgical procedures
T70 8224-8234 Sentence denotes N = 29 (%)
T71 8235-8271 Sentence denotes Age, average (years) 65, 17 (33–83)
T72 8272-8282 Sentence denotes Sex, n (%)
T73 8283-8298 Sentence denotes  Female 9 (31)
T74 8299-8313 Sentence denotes  Male 20 (69)
T75 8314-8334 Sentence denotes Ethnic origin, n (%)
T76 8335-8350 Sentence denotes  White 28 (97)
T77 8351-8373 Sentence denotes  Latin American 1 (3)
T78 8374-8401 Sentence denotes Comorbidity, n (%) 21 (72)
T79 8402-8424 Sentence denotes  Hypertension 11 (38)
T80 8425-8448 Sentence denotes  Dyslipidaemia 10 (34)
T81 8449-8462 Sentence denotes  COPD 5 (17)
T82 8463-8480 Sentence denotes  Diabetes 5 (17)
T83 8481-8497 Sentence denotes  Obesity 3 (10)
T84 8498-8528 Sentence denotes  Chronic kidney disease 2 (7)
T85 8529-8559 Sentence denotes  Cardiovascular disease 2 (7)
T86 8560-8602 Sentence denotes Physical status, ASA classification, n (%)
T87 8603-8612 Sentence denotes  I 1 (3)
T88 8613-8624 Sentence denotes  II 7 (24)
T89 8625-8638 Sentence denotes  III 19 (66)
T90 8639-8649 Sentence denotes  IV 2 (7)
T91 8650-8686 Sentence denotes Oncological status, n (%) 25 (86.2)
T92 8687-8708 Sentence denotes  Lung cancer 16 (55)
T93 8709-8738 Sentence denotes  Pulmonary metastases 4 (14)
T94 8739-8759 Sentence denotes  Mesothelioma 2 (7)
T95 8760-8792 Sentence denotes  Mediastinal lymph nodes 3 (10)
T96 8793-8797 Sentence denotes ASA:
T97 8798-8878 Sentence denotes American Society of Anesthesiology; COPD: chronic obstructive pulmonary disease.
T98 8879-8966 Sentence denotes A postoperative follow-up consultation is normally carried out 2 weeks after discharge.
T99 8967-9142 Sentence denotes During the pandemic, our institution became a COVID-19 hotspot, so to reduce exposure to the virus, we performed remote consultations by telephone [12] 1 week after discharge.
T100 9143-9251 Sentence denotes We also added questions to the follow-up telephone consultation to screen for COVID-19 respiratory symptoms.
T101 9252-9345 Sentence denotes If COVID-19 symptoms were detected, we recommended that the patient go to the emergency room.
T102 9346-9507 Sentence denotes Once in the emergency room, the patient was examined and if clinical suspicion of COVID-19 was high, diagnostic tests (chest radiography and PCR) were performed.
T103 9509-9525 Sentence denotes Ethics statement
T104 9526-9670 Sentence denotes This article is a description of our clinical practice and outcomes during the COVID-19 pandemic and does not constitute human subject research.
T105 9671-9800 Sentence denotes According to the 12 de Octubre ethics committee for clinical research, there was no need for institutional review board approval.
T106 9802-9809 Sentence denotes RESULTS
T107 9810-9937 Sentence denotes Surgical activity during the pandemic was dramatically reduced compared to that during the months before the pandemic (Fig. 2).
T108 9938-10047 Sentence denotes The number of elective surgical procedures during March was reduced to 20, 47% fewer than the previous month.
T109 10048-10110 Sentence denotes No lung transplant was performed during the COVID-19 pandemic.
T110 10111-10120 Sentence denotes Figure 2:
T111 10122-10180 Sentence denotes Elective surgical activity before and during the pandemic.
T112 10181-10216 Sentence denotes COVID-19: coronavirus disease 2019.
T113 10217-10331 Sentence denotes In total, 35 patients were referred for surgical procedures during the COVID-19 pandemic from 1 March to 24 April.
T114 10332-10490 Sentence denotes One patient admitted for a lung cancer staging mediastinoscopy started to show fever and respiratory symptoms compatible with COVID-19 h before the operation.
T115 10491-10610 Sentence denotes A diagnostic PCR was performed for SARS-CoV-2; the test results were positive; the surgical intervention was cancelled.
T116 10611-10652 Sentence denotes The patient died of SARS-CoV-2 pneumonia.
T117 10653-10772 Sentence denotes Of the 34 patients who finally underwent thoracic surgery, 12 were women and 22 were men; the average age was 60 years.
T118 10773-10815 Sentence denotes A majority (25) were patients with cancer.
T119 10816-11020 Sentence denotes Among the comorbidities, the most frequent was hypertension (11) followed by dyslipidaemia (10), chronic obstructive pulmonary disease (5), diabetes (5), kidney failure (2) and cardiovascular disease (2).
T120 11021-11390 Sentence denotes The most frequent operations, described in Table 3, were anatomical lobectomy (11) and wedge segmentectomy (8); followed by mediastinoscopy (4), bullectomy (3), pleural biopsy (2), lung biopsy (2), extrapleural pneumonectomy (1), anatomical sublobar resection (1), and 2 emergency thoracotomies, 1 for control of thoracic trauma damage and another due to mediastinitis.
T121 11391-11432 Sentence denotes The average length of stay was 4.72 days.
T122 11433-11492 Sentence denotes The patients had the following postoperative complications:
T123 11493-11637 Sentence denotes 1 patient had non-surgical bleeding; 1, acute renal failure; 1, pneumothorax; and 1, atrial fibrillation, all of which were resolved favourably.
T124 11638-11802 Sentence denotes The patient who had thoracic trauma presented with fever and pulmonary infiltrates 7 days after the operation and was diagnosed with bilateral SARS-CoV-2 pneumonia.
T125 11803-11850 Sentence denotes Two patients died within 30 days after surgery:
T126 11851-11919 Sentence denotes 1 was diagnosed with COVID-19 and the other died of advanced cancer.
T127 11920-11928 Sentence denotes Table 3:
T128 11930-11993 Sentence denotes Outcomes of postoperative patients during the COVID-19 pandemic
T129 11994-12082 Sentence denotes Procedure N (%) Period Hospitalization (days) Postoperative complicationsa Deathsb
T130 12083-12125 Sentence denotes Prescreening period Post-screening period
T131 12126-12264 Sentence denotes 1–19 March 20 March– 5 April Diagnostic PCR COVID-19 6–24 April Screening PCR COVID-19 Diagnostic PCR COVID-19 Yes Type T COVID+
T132 12265-12346 Sentence denotes Total % 34 22 (65%) 2 (6%) (−) (+) 10 (29%) All negative 4.72 4 2 1
T133 12347-12417 Sentence denotes Elective surgery Mediastinoscopy 4 (12) 2 0 2 2 1 0 0 0
T134 12418-12478 Sentence denotes Pleural biopsy 2 (6) 1 0 1 1 5.5 1 Bleeding 1 0
T135 12479-12526 Sentence denotes Lung biopsy 2 (6) 2 0 0 0 4 0 0 0
T136 12527-12601 Sentence denotes Wedge segmentectomy 8 (24) 7 0 1 (9 days)c 1 1 3.9 1 AKI 1 1
T137 12602-12672 Sentence denotes Anatomical sublobar resection 1 (3) 1 0 0 0 None 3 0 0 0
T138 12673-12736 Sentence denotes Anatomical lobectomy 11 (32) 6 0 5 5 5.3 1 AF 0 0
T139 12737-12799 Sentence denotes Extrapleural pneumonectomy 1 (3) 1 0 0 0 8 0 0 0
T140 12800-12867 Sentence denotes Urgent surgeryd Bullectomy 3 (9) 1 2 1 0 0 8.3 0 0 0
T141 12868-12979 Sentence denotes Emergency surgerye Thoracic trauma damage control 1 (3) 1 0 1 (7 days)c 0 0 (−)f 1 Pneumonia 0 0
T142 12980-13032 Sentence denotes Mediastinitis 1 (3) 0 0 1 1 (−)f 0 0 0
T143 13033-13093 Sentence denotes a Early postoperative complications during hospitalization.
T144 13094-13210 Sentence denotes b Mortality within 30 days after surgery was divided in T (total mortality) and COVID+ (mortality due to COVID-19).
T145 13211-13275 Sentence denotes c Days after surgery PCR SARS-CoV-2 test results were positive.
T146 13276-13316 Sentence denotes d Urgent surgery: not life-threatening.
T147 13317-13356 Sentence denotes e Emergency surgery: life-threatening.
T148 13357-13410 Sentence denotes f Still hospitalized at the writing of this article.
T149 13411-13590 Sentence denotes AF: atrial fibrillation; AKI: acute kidney injury; COVID-19: coronavirus disease 2019; PCR: polymerase chain reaction; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.
T150 13591-13686 Sentence denotes On 1 March, the first patient with COVID-19 was diagnosed at 12 de Octubre University Hospital.
T151 13687-13877 Sentence denotes Elective surgical interventions were carried out regularly in the thoracic surgery department until 19 March: a total of 19 elective procedures, 1 urgent procedure and 1 emergency procedure.
T152 13878-13974 Sentence denotes During this period, 2 patients developed symptoms of COVID-19 and had positive PCR test results.
T153 13975-14125 Sentence denotes Diagnostic imaging was performed (1 chest CT and 1 chest X-ray); the results of both imaging texts were compatible with SARS-CoV-2 pneumonia [13, 14].
T154 14126-14260 Sentence denotes Given the severity of the pandemic at that time and the limited resources, our centre was forced to delay several surgical procedures.
T155 14261-14338 Sentence denotes Starting 20 March, we only performed urgent or emergency surgical procedures.
T156 14339-14416 Sentence denotes Only 2 procedures were carried out for pneumothorax with persistent air leak.
T157 14417-14501 Sentence denotes One started with respiratory symptoms but the results of the PCR test were negative.
T158 14502-14620 Sentence denotes Starting 6 April, we added non-delayed oncological surgical procedures according to previously described criteria [7].
T159 14621-14854 Sentence denotes In total, between 6 and 24 April, only asymptomatic patients with negative PCR test results who met tumour resectability criteria, completed quarantine, and had chest CT results that were not suspicious for COVID-19 were operated on.
T160 14855-14965 Sentence denotes We performed 9 electives surgical procedures and 1 emergency thoracotomy procedure for mediastinitis drainage.
T161 14966-15065 Sentence denotes More than 60% of the elective operations were lung resections in patients diagnosed with carcinoma.
T162 15066-15274 Sentence denotes During this last period, all patients underwent the COVID-19 screening protocol; no SARS-CoV-2 infections were detected before the operation and neither of them, as of this writing, has developed the disease.
T163 15275-15394 Sentence denotes In total, 2 of the 34 patients (5.88%) who underwent surgery during the COVID-19 pandemic were diagnosed with COVID-19.
T164 15395-15547 Sentence denotes One of the 2 had thoracic trauma with multiple rib fractures and right haemothorax and required an emergency thoracotomy for damage control on 15 March.
T165 15548-15795 Sentence denotes On the seventh postoperative day, the patient started showing symptoms of fever and pulmonary infiltrates on a CT scan, so he was tested with SARS-CoV-2 PCR, the results of which were positive; he was diagnosed with bilateral SARS-CoV-2 pneumonia.
T166 15796-15874 Sentence denotes The course of the patient’s disease was difficult: he required a tracheostomy.
T167 15875-15982 Sentence denotes As of this writing, the patient has been discharged from the intensive care unit but is still hospitalized.
T168 15983-16109 Sentence denotes The results of the latest test for SARS-CoV-2 were negative; he has been decannulated, and he does not require oxygen therapy.
T169 16110-16222 Sentence denotes The second patient was a 79-year-old man who underwent a wedge segmentectomy of the left upper lobe on 16 March.
T170 16223-16459 Sentence denotes He had a history of a right upper lobectomy, radical nephrectomy for renal carcinoma, aortic aneurysm, atrial fibrillation, hypertension and ischaemic heart disease, classified as American Society of Anesthesiologists classification IV.
T171 16460-16597 Sentence denotes The patient was discharged after the operation but returned to the emergency room on the 9th postoperative day with respiratory symptoms.
T172 16598-16649 Sentence denotes He was diagnosed with bilateral COVID-19 pneumonia.
T173 16650-16717 Sentence denotes The patient required hospital admission and died despite treatment.
T174 16719-16729 Sentence denotes DISCUSSION
T175 16730-16888 Sentence denotes On 30 January 2020, the World Health Organization declared the Chinese outbreak of COVID-19 to be a Public Health Emergency of International Concern [15, 16].
T176 16889-17230 Sentence denotes In early February 2020, the World Health Organization based the diagnostic criteria for COVID-19 on compatible clinical features (fever and lower respiratory tract infection) associated with epidemiological risk (history of travel to Hubei province, China or close contact with confirmed COVID-19 patients within days of symptom onset) [15].
T177 17231-17340 Sentence denotes These were the criteria that we used in our hospital during February and mid-March to screen for the disease.
T178 17341-17501 Sentence denotes In Spain, at the writing of this article, there are a total of 205 905 cases confirmed by SARS-CoV-2 PCR, of which 58 819 are located in the Madrid region [17].
T179 17502-17709 Sentence denotes The 12 de Octubre University Hospital is a tertiary care hospital with more than 1300 hospital beds, of which more than 1000 were reserved for patients with COVID-19 during the worst moments of the pandemic.
T180 17710-17815 Sentence denotes Clinical practice has been altered and that of the thoracic surgery department has not been an exception.
T181 17816-17857 Sentence denotes The institutional resources were altered:
T182 17858-17961 Sentence denotes 3 thoracic surgeons were assigned to the hospital's COVID-19 units or to Madrid’s Ifema field hospital.
T183 17962-18213 Sentence denotes As specialists in pulmonary disease, we also contributed to reduce the workload in the intensive care units [18] by treating pulmonary diseases likely to require our intervention (e.g. pneumothorax, pneumomediastinum and surgical tracheostomies [19]).
T184 18214-18399 Sentence denotes Despite the preventive measures approved by our hospital, 4 doctors out of 11 (36%) from our department, 3 medical residents and 1 attending physician have been diagnosed with COVID-19.
T185 18400-18459 Sentence denotes One required hospital admission but all evolved favourably.
T186 18460-18702 Sentence denotes Due to the increased risk of surgical complications [20, 21] in those patients with asymptomatic COVID-19, we established a protocol in the thoracic surgery department designed to detect these patients prior to undergoing surgical procedures.
T187 18703-18745 Sentence denotes Our protocol includes the use of chest CT.
T188 18746-18992 Sentence denotes As recently reported [13, 14], chest CT demonstrates typical radiographic features in almost all patients with COVID-19, including ground-glass opacities, multifocal patchy consolidation and/or interstitial changes with a peripheral distribution.
T189 18993-19162 Sentence denotes In our experience, none of the chest CTs performed as part of the screening protocol for COVID-19 prior to surgery identified initial signs of infection with SARS-CoV-2.
T190 19163-19256 Sentence denotes This finding correlates well with the PCR tests performed, all of which had negative results.
T191 19257-19462 Sentence denotes However, at the beginning of the pandemic in our hospital, we detected in several follow-up chest CTs of oncological patients who were asymptomatic the typical radiographic features of coronavirus disease.
T192 19463-19688 Sentence denotes For this reason and due to the lack of sensitivity of PCR tests and chest radiographs in identifying the initial signs of COVID-19, we decided to apply all the resources available in our hospital to screening for the disease.
T193 19689-19796 Sentence denotes We also suggest that, in further and more favourable phases of the pandemic, CT screening could be omitted.
T194 19797-19859 Sentence denotes Of the 34 patients who were operated on, 2 developed COVID-19.
T195 19860-19921 Sentence denotes Of these, 1 died and the other patient is still hospitalized.
T196 19922-20088 Sentence denotes The operation performed on the first patient, a 79-year-old man with multiple comorbidities who had a history of a contralateral lobectomy, was a wedge segmentectomy.
T197 20089-20172 Sentence denotes The other operation was a thoracotomy for damage control following thoracic trauma.
T198 20173-20269 Sentence denotes It is interesting to note that both patients were operated on, on 16 and 15 March, respectively.
T199 20270-20430 Sentence denotes These dates coincide with the dates of the peak incidence of COVID-19 in our region and with the declaration of the state of emergency and confinement in Spain:
T200 20431-20450 Sentence denotes 14 March 2020 [22].
T201 20451-20545 Sentence denotes The coronavirus disease pandemic has impacted all areas of daily life, including medical care.
T202 20546-20632 Sentence denotes The treatment of patients with lung cancer during this crisis is challenging [23, 24].
T203 20633-20742 Sentence denotes On the one hand, patients have a risk of death from cancer, which is increased if radical surgery is delayed.
T204 20743-20950 Sentence denotes On the other hand, the risk of death or of serious complications from coronavirus disease and the higher lethality of the infection in immunocompromised patients have to be weighed in relation to the former.
T205 20951-21169 Sentence denotes The Royal College of Surgeons of England [25] noted that patients with cancers with a high risk of progression without treatment should be operated on as resources, such as the capacity of intensive care units, permit.
T206 21170-21364 Sentence denotes In some cases [10], neoadjuvant therapy may be used as a means of delaying surgery, although the risk of exposure to COVID-19 during clinic visits for chemotherapy or radiotherapy is still high.
T207 21365-21488 Sentence denotes The spread of SARS-CoV-2 has already taken on pandemic proportions, affecting over 100 countries in a matter of weeks [26].
T208 21489-21553 Sentence denotes As of April 2020, we are almost at the 4-month mark of COVID-19.
T209 21554-21749 Sentence denotes Regarding the future [27], the Spanish College of Surgeons [28] has defined 5 scenarios of the pandemic, based on the percentage of patients with COVID-19 in the hospital in relation to capacity.
T210 21750-21824 Sentence denotes When the percentage becomes <5%, surgical activity could return to normal.
T211 21825-21959 Sentence denotes With this article, our goal was to offer our experience as thoracic surgeons in the epicentre of the COVID-19 pandemic in our country.
T212 21960-22196 Sentence denotes We highlight that once we added preoperative asymptomatic patients to those checked with the screening protocol for COVID-19 to the preventive measures practiced in our hospital, none of our patients presented with SARS-CoV-2 infection.
T213 22198-22209 Sentence denotes Limitations
T214 22210-22392 Sentence denotes This study has several limitations: the small sample size, the retrospective nature of the study and the limited diagnostic testing available during the early period of the pandemic.
T215 22394-22404 Sentence denotes CONCLUSION
T216 22405-22482 Sentence denotes SARS-CoV-2 represents a tremendous limitation for thoracic surgical practice.
T217 22483-22624 Sentence denotes Adapting preoperative practices to exclude asymptomatic patients infected with SARS-CoV-2 allowed us to perform thoracic surgical procedures.
T218 22625-22661 Sentence denotes Conflict of interest: none declared.
T219 22663-22683 Sentence denotes Author contributions
T220 22684-22707 Sentence denotes María Salmerón Jiménez:
T221 22708-22848 Sentence denotes Conceptualization; Data curation; Formal analysis; Methodology; Validation; Visualization; Writing—original draft; Writing—review & editing.
T222 22849-22871 Sentence denotes Fátima Hermoso Alarza:
T223 22872-23025 Sentence denotes Conceptualization; Data curation; Formal analysis; Methodology; Supervision; Validation; Visualization; Writing—original draft; Writing—review & editing.
T224 23026-23046 Sentence denotes Ivan Martínez Serna:
T225 23047-23087 Sentence denotes Methodology; Supervision; Visualization.
T226 23088-23112 Sentence denotes Carmen Marrón Fernández:
T227 23113-23150 Sentence denotes Methodology; Supervision; Validation.
T228 23151-23177 Sentence denotes José Carlos Meneses Pardo:
T229 23178-23217 Sentence denotes Supervision; Validation; Visualization.
T230 23218-23246 Sentence denotes José Alberto García Salcedo:
T231 23247-23286 Sentence denotes Supervision; Validation; Visualization.
T232 23287-23310 Sentence denotes Alejandro Torres Serna:
T233 23311-23325 Sentence denotes Visualization.
T234 23326-23352 Sentence denotes Mario Gustavo Manama Gama:
T235 23353-23367 Sentence denotes Visualization.
T236 23368-23401 Sentence denotes Oscar Enrique Colmenares Mendoza:
T237 23402-23416 Sentence denotes Visualization.
T238 23417-23442 Sentence denotes Vicente Diaz-Hellín Gude:
T239 23443-23482 Sentence denotes Supervision; Validation; Visualization.
T240 23483-23510 Sentence denotes Antonio Pablo Gamez García:
T241 23511-23658 Sentence denotes Conceptualization; Investigation; Methodology; Project administration; Resources; Supervision; Validation; Visualization; Writing—review & editing.
T242 23660-23680 Sentence denotes Reviewer information
T243 23681-23882 Sentence denotes European Journal of Cardio-Thoracic Surgery thanks Paolo Scanagatta, Gonzalo Varela, Douglas West and the other, anonymous reviewer(s) for their contribution to the peer review process of this article.
T244 23884-23897 Sentence denotes ABBREVIATIONS
T245 23898-23931 Sentence denotes COVID-19 Coronavirus disease 2019
T246 23932-23954 Sentence denotes CT Computed tomography
T247 23955-23984 Sentence denotes PCR Polymerase chain reaction
T248 23985-24043 Sentence denotes SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2

2_test

Id Subject Object Predicate Lexical cue
32951033-31978945-28903662 1861-1862 31978945 denotes 1
32951033-32081636-28903663 2310-2311 32081636 denotes 3
32951033-32007143-28903664 2313-2314 32007143 denotes 4
32951033-32292899-28903665 2450-2451 32292899 denotes 5
32951033-32252979-28903666 5023-5024 32252979 denotes 7
32951033-32232230-28903667 5532-5533 32232230 denotes 9
32951033-32213507-28903668 9115-9117 32213507 denotes 12
32951033-32100485-28903669 14121-14123 32100485 denotes 14
32951033-32252979-28903670 14617-14618 32252979 denotes 7
32951033-32112977-28903671 16880-16882 32112977 denotes 15
32951033-32320003-28903672 16884-16886 32320003 denotes 16
32951033-32112977-28903673 17226-17228 32112977 denotes 15
32951033-32123994-28903674 18071-18073 32123994 denotes 18
32951033-32221117-28903675 18513-18515 32221117 denotes 20
32951033-32171076-28903676 18517-18519 32171076 denotes 21
32951033-32100485-28903677 18772-18774 32100485 denotes 14
32951033-32285279-28903678 20624-20626 32285279 denotes 23
32951033-32178769-28903679 21484-21486 32178769 denotes 26

MyTest

Id Subject Object Predicate Lexical cue
32951033-31978945-28903662 1861-1862 31978945 denotes 1
32951033-32081636-28903663 2310-2311 32081636 denotes 3
32951033-32007143-28903664 2313-2314 32007143 denotes 4
32951033-32292899-28903665 2450-2451 32292899 denotes 5
32951033-32252979-28903666 5023-5024 32252979 denotes 7
32951033-32232230-28903667 5532-5533 32232230 denotes 9
32951033-32213507-28903668 9115-9117 32213507 denotes 12
32951033-32100485-28903669 14121-14123 32100485 denotes 14
32951033-32252979-28903670 14617-14618 32252979 denotes 7
32951033-32112977-28903671 16880-16882 32112977 denotes 15
32951033-32320003-28903672 16884-16886 32320003 denotes 16
32951033-32112977-28903673 17226-17228 32112977 denotes 15
32951033-32123994-28903674 18071-18073 32123994 denotes 18
32951033-32221117-28903675 18513-18515 32221117 denotes 20
32951033-32171076-28903676 18517-18519 32171076 denotes 21
32951033-32100485-28903677 18772-18774 32100485 denotes 14
32951033-32285279-28903678 20624-20626 32285279 denotes 23
32951033-32178769-28903679 21484-21486 32178769 denotes 26

testtesttest

Id Subject Object Predicate Lexical cue uberon_id
T1 783-788 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1167-1171 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 2222-2227 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230
T7 5539-5544 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 5940-5945 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 6581-6585 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T10 7675-7691 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T11 8043-8048 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 8053-8058 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 8284-8290 Body_part denotes Female http://purl.obolibrary.org/obo/UBERON_0003100
T14 8300-8304 Body_part denotes Male http://purl.obolibrary.org/obo/UBERON_0003101
T15 8507-8513 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T16 8688-8692 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 8761-8784 Body_part denotes Mediastinal lymph nodes http://purl.obolibrary.org/obo/UBERON_0002524
T18 9458-9463 Body_part denotes tests http://purl.obolibrary.org/obo/UBERON_0000473
T19 9465-9470 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T20 10051-10055 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T21 10359-10363 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 10970-10976 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T23 11202-11206 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 12479-12483 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 13447-13453 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T26 14011-14016 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T27 14026-14031 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T28 14782-14787 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 15012-15016 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T30 15442-15445 Body_part denotes rib http://purl.obolibrary.org/obo/UBERON_0002228
T31 16194-16209 Body_part denotes left upper lobe http://purl.obolibrary.org/obo/UBERON_0008952
T32 16374-16379 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230
T36 17029-17052 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T37 17946-17951 Body_part denotes field http://purl.obolibrary.org/obo/UBERON_0007688
T38 18736-18741 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 18777-18782 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T40 19024-19029 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T41 19205-19210 Body_part denotes tests http://purl.obolibrary.org/obo/UBERON_0000473
T42 19349-19354 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T43 19521-19526 Body_part denotes tests http://purl.obolibrary.org/obo/UBERON_0000473
T44 19531-19536 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T45 20577-20581 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T46 20644-20648 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T47 20756-20760 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T48 23858-23865 Body_part denotes process http://purl.obolibrary.org/obo/UBERON_0004529