PMC:7537531 / 11372-12145
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T71 | 133-137 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T72 | 235-246 | Body_part | denotes | neutrophils | http://purl.org/sig/ont/fma/fma62860 |
| T73 | 345-370 | Body_part | denotes | alveolar epithelial cells | http://purl.org/sig/ont/fma/fma62499 |
| T74 | 365-370 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T75 | 372-375 | Body_part | denotes | AEC | http://purl.org/sig/ont/fma/fma62499 |
| T76 | 409-415 | Body_part | denotes | Tissue | http://purl.org/sig/ont/fma/fma9637 |
| T77 | 424-428 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T78 | 455-458 | Body_part | denotes | AEC | http://purl.org/sig/ont/fma/fma62499 |
| T79 | 536-544 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T80 | 608-613 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T30 | 133-137 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T31 | 409-415 | Body_part | denotes | Tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T63 | 50-54 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T64 | 152-156 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T65 | 210-220 | Disease | denotes | bronchitis | http://purl.obolibrary.org/obo/MONDO_0003781 |
| T66 | 269-278 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T67 | 330-341 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T68 | 440-451 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T156 | 78-86 | http://purl.obolibrary.org/obo/NCBITaxon_10026 | denotes | hamsters |
| T157 | 133-137 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T158 | 133-137 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T159 | 180-188 | http://purl.obolibrary.org/obo/NCBITaxon_10026 | denotes | hamsters |
| T160 | 222-223 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T161 | 225-226 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T162 | 354-364 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T163 | 365-370 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T164 | 424-428 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T165 | 608-613 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T166 | 703-710 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T167 | 731-732 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T168 | 756-757 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T169 | 759-763 | http://purl.obolibrary.org/obo/CLO_0002755 | denotes | d, f |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T10 | 210-220 | Phenotype | denotes | bronchitis | http://purl.obolibrary.org/obo/HP_0012387 |
| T11 | 269-278 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T75 | 88-301 | Sentence | denotes | Histopathology of haematoxylin–eosin‐stained lung sections from SARS‐CoV‐2‐infected Chinese hamsters revealed suppurative bronchitis (a, b; arrow: neutrophils) and necrosuppurative pneumonia (c, d) at 2 and 3 dpi. |
| T76 | 302-408 | Sentence | denotes | At 5 dpi (e, f), additional hyperplasia of alveolar epithelial cells (AEC)‐type II was salient (f, arrow). |
| T77 | 409-520 | Sentence | denotes | Tissue damage, cell influx and hyperplasia of AEC‐II (h, arrow) were milder but still present at 14 dpi (g, h). |
| T78 | 521-650 | Sentence | denotes | Of note, acute alveolar damage (I, arrows) was multifocally distributed throughout the lungs across all time points investigated. |
| T79 | 651-718 | Sentence | denotes | None of these lesions was detected in mock‐infected animals (j, k). |
| T80 | 719-724 | Sentence | denotes | Bars: |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 255 | 70-86 | Species | denotes | Chinese hamsters | Tax:10029 |
| 256 | 172-188 | Species | denotes | Chinese hamsters | Tax:10029 |
| 257 | 106-118 | Chemical | denotes | haematoxylin | MESH:D006416 |
| 258 | 119-124 | Chemical | denotes | eosin | MESH:D004801 |
| 259 | 37-45 | Disease | denotes | infected | MESH:D007239 |
| 260 | 50-69 | Disease | denotes | SARS‐CoV‐2‐infected | MESH:C000657245 |
| 261 | 152-171 | Disease | denotes | SARS‐CoV‐2‐infected | MESH:C000657245 |
| 262 | 210-220 | Disease | denotes | bronchitis | MESH:D001991 |
| 263 | 252-278 | Disease | denotes | necrosuppurative pneumonia | MESH:D011014 |
| 264 | 330-341 | Disease | denotes | hyperplasia | MESH:D006965 |
| 265 | 440-461 | Disease | denotes | hyperplasia of AEC‐II | MESH:C535847 |
| 266 | 530-551 | Disease | denotes | acute alveolar damage | MESH:D055371 |
| 267 | 694-702 | Disease | denotes | infected | MESH:D007239 |