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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 26-32 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 111-121 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T3 326-332 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 542-549 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T5 586-590 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T6 774-784 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T7 880-888 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T8 1447-1449 Body_part denotes H3 http://purl.org/sig/ont/fma/fma84131
T9 1657-1667 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 15-19 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T2 166-170 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T3 315-319 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 203-209 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T2 267-270 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 429-434 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T4 536-541 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 586-590 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T6 862-867 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T7 944-945 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T8 1120-1127 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T9 1540-1541 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 111-121 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T2 774-784 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T3 774-779 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T4 780-784 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T5 880-888 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T6 1657-1667 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
2 107-110 Gene denotes Tag Gene:404663
3 15-25 Species denotes SARS‐CoV‐2 Tax:2697049
10 913-918 Gene denotes ORF3a Gene:43740569
11 1718-1721 Gene denotes Tag Gene:404663
12 166-176 Species denotes SARS‐CoV‐2 Tax:2697049
13 203-209 Species denotes humans Tax:9606
14 315-325 Species denotes SARS‐CoV‐2 Tax:2697049
15 971-980 Mutation denotes Asp614Gly p.D614G

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-132 Sentence denotes 11Evolution of SARS‐CoV‐2 genome from December 2019 to late March 2020: emerged haplotypes and informative Tag nucleotide variations
T2 133-146 Sentence denotes SAFARI et al.
T3 148-156 Sentence denotes Abstract
T4 157-165 Sentence denotes Abstract
T5 166-210 Sentence denotes SARS‐CoV‐2 causes serious disease in humans.
T6 211-297 Sentence denotes First identified in November/December 2019 in China, it has rapidly spread world‐wide.
T7 298-476 Sentence denotes We analyzed 2790 SARS‐CoV‐2 genome sequences from 56 countries that were available on April 2, 2020 to assess the evolution of the virus during this early phase of its expansion.
T8 477-591 Sentence denotes We aimed to assess sequence variations that had evolved in virus genomes, giving greatest attention to the S gene.
T9 592-719 Sentence denotes We also aimed to identify haplotypes that the variations may define and consider their geographic and chronologic distribution.
T10 720-809 Sentence denotes Variations at 1930 positions that together cause 1203 amino acid changes were identified.
T11 810-943 Sentence denotes The frequencies of changes normalized to lengths of genes and encoded proteins were relatively high in ORF3a and relatively low in M.
T12 944-1148 Sentence denotes A variation that causes an Asp614Gly near the receptor binding domain of S was found at high frequencies, and it was considered that this may contribute to the rapid spread of viruses with this variation.
T13 1149-1198 Sentence denotes Our most important findings relate to haplotypes.
T14 1199-1367 Sentence denotes Sixty‐six haplotypes that constitute thirteen haplotype groups (H1‐H13) were identified, and 84.6% of the 2790 sequences analyzed were associated with these haplotypes.
T15 1368-1450 Sentence denotes The majority of the sequences (75.1%) were associated with haplotype groups H1‐H3.
T16 1451-1539 Sentence denotes The distribution pattern of the haplotype groups differed in various geographic regions.
T17 1540-1578 Sentence denotes A few were country/territory specific.
T18 1579-1643 Sentence denotes Location and time of emergence of some haplotypes are discussed.
T19 1644-1779 Sentence denotes Importantly, nucleotide variations that define the various haplotypes and Tag/signature variations for most of haplotypes are reported.
T20 1780-1841 Sentence denotes The practical applications of these variations are discussed.
T21 1842-1881 Sentence denotes This article is protected by copyright.
T22 1882-1902 Sentence denotes All rights reserved.