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PMC:7534206 / 21623-22270 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T70 78-86 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T71 185-193 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T72 295-304 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T73 316-320 Body_part denotes IL-2 http://purl.org/sig/ont/fma/fma84051
T74 557-561 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T75 618-635 Body_part denotes systemic arterial http://purl.org/sig/ont/fma/fma66464

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T63 552-561 Body_part denotes deep vein http://purl.obolibrary.org/obo/UBERON_0035552
T64 557-561 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T65 618-635 Body_part denotes systemic arterial http://purl.obolibrary.org/obo/UBERON_0004573

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T211 27-42 Disease denotes hypercoagulable http://purl.obolibrary.org/obo/MONDO_0002305
T212 104-116 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T213 247-255 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T214 475-483 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T215 532-550 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T216 562-572 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T217 583-589 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T219 591-612 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T255 64-69 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T256 183-184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T257 203-205 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T258 316-320 http://purl.obolibrary.org/obo/PR_000001379 denotes IL-2
T259 382-383 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T260 414-415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T261 557-561 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T262 557-561 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T263 618-635 http://purl.obolibrary.org/obo/UBERON_0004573 denotes systemic arterial

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T106 316-318 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T97 78-92 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T98 185-199 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T99 532-550 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T100 552-572 Phenotype denotes deep vein thrombosis http://purl.obolibrary.org/obo/HP_0002625
T101 574-589 Phenotype denotes ischemic stroke http://purl.obolibrary.org/obo/HP_0002140
T102 591-612 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T12 104-116 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T13 343-369 http://purl.obolibrary.org/obo/GO_0050820 denotes upregulate the coagulation
T14 358-369 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T202 0-93 Sentence denotes The third component is the hypercoagulable state, caused by the virus-induced cytokine storm.
T203 94-647 Sentence denotes The hyper inflammation phase is characterized by the release of inflammatory markers and a cytokine storm.47–52 In retrospective studies, critically ill COVID-19 patients had increased proinflammatory cytokines, including IL-2 and TNF-α4, which can upregulate the coagulation system.2 In a recent Dutch study, there was a 31% incidence of thrombotic complications in patients with COVID-19 admitted to the ICU, mainly consisting of acute pulmonary embolism, deep vein thrombosis, ischemic stroke, myocardial infarction, and systemic arterial embolism.53

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
591 316-320 Gene denotes IL-2 Gene:3558
592 256-264 Species denotes patients Tax:9606
593 461-469 Species denotes patients Tax:9606
594 98-116 Disease denotes hyper inflammation MESH:D007249
595 232-246 Disease denotes critically ill MESH:D016638
596 247-255 Disease denotes COVID-19 MESH:C000657245
597 433-457 Disease denotes thrombotic complications MESH:D013927
598 475-483 Disease denotes COVID-19 MESH:C000657245
599 532-550 Disease denotes pulmonary embolism MESH:D011655
600 552-572 Disease denotes deep vein thrombosis MESH:D020246
601 574-589 Disease denotes ischemic stroke MESH:D002544
602 591-612 Disease denotes myocardial infarction MESH:D009203
603 618-644 Disease denotes systemic arterial embolism MESH:D057772

2_test

Id Subject Object Predicate Lexical cue
32501751-32139904-53715210 200-202 32139904 denotes 47
32501751-32125452-53715210 200-202 32125452 denotes 47
32501751-32031570-53715210 200-202 32031570 denotes 47
32501751-32171076-53715210 200-202 32171076 denotes 47
32501751-31986264-53715210 200-202 31986264 denotes 47
32501751-32192578-53715210 200-202 32192578 denotes 47
32501751-32381264-53715211 645-647 32381264 denotes 53
T26491 200-202 32139904 denotes 47
T94527 200-202 32125452 denotes 47
T65407 200-202 32031570 denotes 47
T13921 200-202 32171076 denotes 47
T53677 200-202 31986264 denotes 47
T62420 200-202 32192578 denotes 47
T99831 645-647 32381264 denotes 53