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PMC:7519301 / 86-866 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 472-479 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T2 506-513 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 51-59 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 61-69 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 61-65 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 304-312 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 304-308 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 461-469 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 461-465 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 699-707 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 699-703 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 37-42 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 115-116 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 152-157 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 172-173 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 534-537 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 730-731 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 506-513 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
10 500-505 Gene denotes Spike Gene:43740568
11 619-623 Gene denotes ACE2 Gene:59272
12 61-71 Species denotes SARS-CoV-2 Tax:2697049
13 304-314 Species denotes SARS-CoV-2 Tax:2697049
14 461-471 Species denotes SARS-CoV-2 Tax:2697049
15 699-709 Species denotes SARS-CoV-2 Tax:2697049
16 51-59 Disease denotes COVID-19 MESH:C000657245
17 519-524 Mutation denotes D614G p.D614G

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-12 Sentence denotes Significance
T3 13-147 Sentence denotes The rapid spread of the virus causing COVID-19, SARS-CoV-2, raises questions about the possibility of a universally effective vaccine.
T4 148-257 Sentence denotes The virus can mutate in a given individual, and these variants can be propagated across populations and time.
T5 258-353 Sentence denotes To understand this process, we analyze 18,514 SARS-CoV-2 sequences sampled since December 2019.
T6 354-480 Sentence denotes We find that neutral evolution, rather than adaptive selection, can explain the rare mutations seen across SARS-CoV-2 genomes.
T7 481-633 Sentence denotes In the immunogenic Spike protein, the D614G mutation has become consensus, yet there is no evidence of mutations affecting binding to the ACE2 receptor.
T8 634-780 Sentence denotes Our results suggest that, to date, the limited diversity seen in SARS-CoV-2 should not preclude a single vaccine from providing global protection.