PMC:7519301 / 4356-4665 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T18","span":{"begin":158,"end":169},"obj":"Body_part"},{"id":"T19","span":{"begin":231,"end":238},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T40","span":{"begin":60,"end":68},"obj":"Disease"},{"id":"T41","span":{"begin":60,"end":64},"obj":"Disease"},{"id":"T42","span":{"begin":292,"end":300},"obj":"Disease"},{"id":"T43","span":{"begin":292,"end":296},"obj":"Disease"}],"attributes":[{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T40","span":{"begin":203,"end":205},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T41","span":{"begin":210,"end":212},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T42","span":{"begin":210,"end":212},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T43","span":{"begin":245,"end":247},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T44","span":{"begin":248,"end":250},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T45","span":{"begin":248,"end":250},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T46","span":{"begin":264,"end":265},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T14","span":{"begin":158,"end":169},"obj":"Chemical"},{"id":"T15","span":{"begin":158,"end":163},"obj":"Chemical"},{"id":"T16","span":{"begin":164,"end":169},"obj":"Chemical"},{"id":"T17","span":{"begin":210,"end":212},"obj":"Chemical"},{"id":"T18","span":{"begin":231,"end":238},"obj":"Chemical"},{"id":"T19","span":{"begin":248,"end":250},"obj":"Chemical"}],"attributes":[{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"113","span":{"begin":83,"end":89},"obj":"Gene"},{"id":"114","span":{"begin":122,"end":123},"obj":"Gene"},{"id":"120","span":{"begin":60,"end":70},"obj":"Species"},{"id":"121","span":{"begin":292,"end":302},"obj":"Species"}],"attributes":[{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"Gene:43740578"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"Gene:43740568"},{"id":"A120","pred":"tao:has_database_id","subj":"120","obj":"Tax:2697049"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T34","span":{"begin":0,"end":309},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Interestingly, the RmYN02 sequence, which is the closest to SARS-CoV-2 in the long ORF1ab but more distant than RaTG13 in S, showed the insertion of multiple amino acids at the cleavage site between the S1 and S2 subunits of the S protein (this S1/S2 insertion is a characteristic feature of SARS-CoV-2) (10)."}