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PMC:7519301 / 30374-31141 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T103 226-238 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T104 312-317 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T105 402-406 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T158 86-91 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T159 258-266 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T160 258-262 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T244 181-186 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T245 290-295 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T246 312-317 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T247 402-412 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T248 489-496 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T249 523-528 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T250 542-549 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primate
T251 558-560 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T252 691-694 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T90 226-238 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
450 252-253 Gene denotes S Gene:43740568
451 86-91 Species denotes Ebola Tax:1570291
452 258-268 Species denotes SARS-CoV-2 Tax:2697049
453 523-528 Species denotes mouse Tax:10090
454 205-209 Mutation denotes A82V p.A82V
455 735-740 Mutation denotes D614G p.D614G

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 290-317 http://purl.obolibrary.org/obo/GO_0046718 denotes virus entry into host cells
T6 296-311 http://purl.obolibrary.org/obo/GO_0044409 denotes entry into host

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T185 0-74 Sentence denotes Correlating in vitro findings with clinical phenotypes can be complicated.
T186 75-187 Sentence denotes During the Ebola outbreak of 2013–2016, some fixed mutations were suspected to confer an advantage to the virus.
T187 188-374 Sentence denotes Specifically, an A82V mutation in the glycoprotein, which, like S for SARS-CoV-2, is critical for the virus entry into host cells, was associated with an increase in infectivity (44–46).
T188 375-660 Sentence denotes Yet, effects varied across cell types (47), and no phenotypic differences were associated with the mutations when viruses were evaluated in vivo in mouse and nonhuman primate models (48), highlighting the difficulty in linking biological mechanisms to outcomes at the population level.
T189 661-767 Sentence denotes So far, no causal association has been identified between the presence of D614G and disease severity (24).

2_test

Id Subject Object Predicate Lexical cue
32868447-28238624-132542408 367-369 28238624 denotes 44
32868447-28084671-132542408 367-369 28084671 denotes 44
32868447-27847361-132542408 367-369 27847361 denotes 44
32868447-30333174-132542409 414-416 30333174 denotes 47
32868447-29742435-132542410 558-560 29742435 denotes 48
32868447-32697968-132542411 763-765 32697968 denotes 24