PMC:7519301 / 19445-20079
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T78 | 32-38 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T79 | 178-182 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T80 | 424-428 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T81 | 577-592 | Body_part | denotes | structural gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T95 | 21-29 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T96 | 21-25 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T170 | 41-42 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T171 | 129-135 | http://purl.obolibrary.org/obo/CLO_0002821 | denotes | dS > 1 |
| T172 | 129-135 | http://purl.obolibrary.org/obo/CLO_0002822 | denotes | dS > 1 |
| T173 | 153-154 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T174 | 178-182 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T175 | 372-377 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T176 | 424-428 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T177 | 588-592 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T65 | 126-128 | Chemical | denotes | dN | http://purl.obolibrary.org/obo/CHEBI_33793 |
| T66 | 168-170 | Chemical | denotes | dN | http://purl.obolibrary.org/obo/CHEBI_33793 |
| T67 | 184-186 | Chemical | denotes | dN | http://purl.obolibrary.org/obo/CHEBI_33793 |
| T68 | 238-240 | Chemical | denotes | SD | http://purl.obolibrary.org/obo/CHEBI_74807 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 297 | 21-31 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T121 | 0-217 | Sentence | denotes | Evolution across the SARS-CoV-2 genome. (A) Bar plot of the average percentage of branch length under diversifying selection (dN/dS > 1) for each site. (B) Bar plot of dN/dS per gene (dN = dS is shown as dashed line). |
| T122 | 218-378 | Sentence | denotes | Error bars indicate SD across subsampled alignments. (C) Box plot of nonsynonymous substitutions per lineage per site across structural and nonstructural genes. |
| T123 | 379-593 | Sentence | denotes | Values across subsampled alignments for each gene are plotted. (D) Average percentage (over subsampled alignments) of branch lengths evolving under neutral (or negative) selection per site for each structural gene. |
| T124 | 594-634 | Sentence | denotes | Median values are shown by dashed lines. |