PMC:7519301 / 17199-17497 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7519301","sourcedb":"PMC","sourceid":"7519301","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7519301","text":" A475V (n = 2, 0.01%). To predict the potential immune pressure linked to T cell responses, we developed a T cell immunogenicity index which takes into account the CD8 and CD4 epitope repertoires in the structural proteins of SARS-CoV-2 (S, N, M, E) and the frequency of human leukocyte antigen (HL","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T65","span":{"begin":76,"end":80},"obj":"Body_part"},{"id":"T66","span":{"begin":109,"end":113},"obj":"Body_part"},{"id":"T67","span":{"begin":214,"end":222},"obj":"Body_part"},{"id":"T68","span":{"begin":277,"end":286},"obj":"Body_part"}],"attributes":[{"id":"A65","pred":"fma_id","subj":"T65","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A66","pred":"fma_id","subj":"T66","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma62852"},{"subj":"T65","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T66","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T67","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T68","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T91","span":{"begin":226,"end":234},"obj":"Disease"},{"id":"T92","span":{"begin":226,"end":230},"obj":"Disease"}],"attributes":[{"id":"A91","pred":"mondo_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T148","span":{"begin":74,"end":80},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T149","span":{"begin":105,"end":106},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T150","span":{"begin":107,"end":113},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T151","span":{"begin":164,"end":167},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T152","span":{"begin":172,"end":175},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T153","span":{"begin":244,"end":248},"obj":"http://purl.obolibrary.org/obo/CLO_0007653"},{"id":"T154","span":{"begin":271,"end":276},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T148","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T149","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T150","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T151","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T152","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T153","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T154","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T52","span":{"begin":176,"end":183},"obj":"Chemical"},{"id":"T53","span":{"begin":214,"end":222},"obj":"Chemical"},{"id":"T54","span":{"begin":287,"end":294},"obj":"Chemical"}],"attributes":[{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"268","span":{"begin":164,"end":167},"obj":"Gene"},{"id":"269","span":{"begin":172,"end":175},"obj":"Gene"},{"id":"270","span":{"begin":244,"end":245},"obj":"Gene"},{"id":"271","span":{"begin":241,"end":242},"obj":"Gene"},{"id":"272","span":{"begin":238,"end":239},"obj":"Gene"},{"id":"275","span":{"begin":226,"end":236},"obj":"Species"},{"id":"276","span":{"begin":271,"end":276},"obj":"Species"}],"attributes":[{"id":"A268","pred":"tao:has_database_id","subj":"268","obj":"Gene:925"},{"id":"A269","pred":"tao:has_database_id","subj":"269","obj":"Gene:920"},{"id":"A270","pred":"tao:has_database_id","subj":"270","obj":"Gene:43740571"},{"id":"A271","pred":"tao:has_database_id","subj":"271","obj":"Gene:43740575"},{"id":"A272","pred":"tao:has_database_id","subj":"272","obj":"Gene:43740568"},{"id":"A275","pred":"tao:has_database_id","subj":"275","obj":"Tax:2697049"},{"id":"A276","pred":"tao:has_database_id","subj":"276","obj":"Tax:9606"},{"subj":"268","pred":"source","obj":"LitCovid-PubTator"},{"subj":"269","pred":"source","obj":"LitCovid-PubTator"},{"subj":"270","pred":"source","obj":"LitCovid-PubTator"},{"subj":"271","pred":"source","obj":"LitCovid-PubTator"},{"subj":"272","pred":"source","obj":"LitCovid-PubTator"},{"subj":"275","pred":"source","obj":"LitCovid-PubTator"},{"subj":"276","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#b8ec93","default":true},{"id":"LitCovid-PD-MONDO","color":"#ec93d2"},{"id":"LitCovid-PD-CLO","color":"#93ecec"},{"id":"LitCovid-PD-CHEBI","color":"#ecd293"},{"id":"LitCovid-PubTator","color":"#b893ec"}]}]}}