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PMC:7519301 / 14184-15333 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T89 572-580 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 572-576 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T127 131-133 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T128 217-218 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T129 341-342 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T130 548-549 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 583-590 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T132 660-661 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 999-1000 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 1135-1136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
239 450-456 Gene denotes ORF1ab Gene:43740578
240 434-435 Gene denotes S Gene:43740568
241 178-179 Gene denotes S Gene:43740568
242 13-14 Gene denotes S Gene:43740568
243 572-582 Species denotes SARS-CoV-2 Tax:2697049
244 966-971 Mutation denotes D614G p.D614G
245 921-926 Mutation denotes D614G p.D614G
246 425-430 Mutation denotes D614G p.D614G
247 440-446 Mutation denotes P4715L p.P4715L
248 68-73 Mutation denotes D614G p.D614G
249 24-29 Mutation denotes D614G p.D614G

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T94 0-7 Sentence denotes Fig. 2.
T95 9-54 Sentence denotes The S mutation D614G quickly became dominant.
T96 55-457 Sentence denotes The mutation D614G was found in 69% of sequences sampled globally as of May 18, 2020, the second most frequent mutation in S was only found in ∼2% of sequences. (A) Number of sequences with D (gray) or G (purple) by continent and sampling date shown cumulatively through the outbreak. (B) Phylogenetic tree reconstructed from all of the ORFs showing the linkage between D614G in S and P4715L in ORF1ab.
T97 458-488 Sentence denotes Tips are colored by continent.
T98 489-712 Sentence denotes The phylogeny suggests that these mutations were linked to a bottleneck event when SARS-CoV-2 viruses were introduced in Europe; this mutation was first seen in Europe in a sequence sampled in Germany at the end of January.
T99 713-1108 Sentence denotes There is no evidence that the increasing predominance of this mutation was caused by convergent selection events that would have occurred in multiple individuals. (C) Overall number of sequences with D614 or D614G across continents; the predominance of D614G in Europe is suggestive of a founder event. (D) Distribution of Hamming distances between sequences with D614, G614 or discordant pairs.
T100 1109-1149 Sentence denotes The median is marked with a dashed line.