PMC:7510993 / 8041-8639 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7510993","sourcedb":"PMC","sourceid":"7510993","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7510993","text":"ated their citizens with BCG multiple times in the past, or currently vaccinate their citizens with BCG multiple times; and v) tuberculosis cases per 1 million people (TB). These BCG-related variables are strongly intercorrelated. Therefore, we reduced the dimensions of these variables (BCG_year, BCG_type, BCG_rate, MultipleBCG, and TB) by extracting the first axis of the PCA analysis: the score of the PCA 1 axis was negatively correlated with the five variables, so the PCA 1 score multiplied by –1 was defined as the BCG vaccination effect.\nWe also compiled socioeconomic data for each countr","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T3","span":{"begin":363,"end":367},"obj":"Body_part"},{"id":"T4","span":{"begin":412,"end":416},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma12520"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma12520"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T54","span":{"begin":127,"end":139},"obj":"Disease"},{"id":"T55","span":{"begin":168,"end":170},"obj":"Disease"},{"id":"T56","span":{"begin":335,"end":337},"obj":"Disease"}],"attributes":[{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0018076"},{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0018076"},{"id":"A56","pred":"mondo_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/MONDO_0018076"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T55","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T56","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T15","span":{"begin":25,"end":28},"obj":"Chemical"},{"id":"T16","span":{"begin":100,"end":103},"obj":"Chemical"},{"id":"T17","span":{"begin":179,"end":182},"obj":"Chemical"},{"id":"T18","span":{"begin":375,"end":378},"obj":"Chemical"},{"id":"T20","span":{"begin":406,"end":409},"obj":"Chemical"},{"id":"T22","span":{"begin":475,"end":478},"obj":"Chemical"},{"id":"T24","span":{"begin":523,"end":526},"obj":"Chemical"}],"attributes":[{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_41001"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_41001"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_41001"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_36751"},{"id":"A19","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_62248"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_36751"},{"id":"A21","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_62248"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_36751"},{"id":"A23","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_62248"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_41001"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"140","span":{"begin":160,"end":166},"obj":"Species"},{"id":"151","span":{"begin":25,"end":28},"obj":"Species"},{"id":"152","span":{"begin":100,"end":103},"obj":"Species"},{"id":"153","span":{"begin":179,"end":182},"obj":"Species"},{"id":"154","span":{"begin":523,"end":526},"obj":"Species"},{"id":"159","span":{"begin":127,"end":139},"obj":"Disease"}],"attributes":[{"id":"A140","pred":"tao:has_database_id","subj":"140","obj":"Tax:9606"},{"id":"A151","pred":"tao:has_database_id","subj":"151","obj":"Tax:33892"},{"id":"A152","pred":"tao:has_database_id","subj":"152","obj":"Tax:33892"},{"id":"A153","pred":"tao:has_database_id","subj":"153","obj":"Tax:33892"},{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"Tax:33892"},{"id":"A159","pred":"tao:has_database_id","subj":"159","obj":"MESH:D014376"},{"subj":"140","pred":"source","obj":"LitCovid-PubTator"},{"subj":"151","pred":"source","obj":"LitCovid-PubTator"},{"subj":"152","pred":"source","obj":"LitCovid-PubTator"},{"subj":"153","pred":"source","obj":"LitCovid-PubTator"},{"subj":"154","pred":"source","obj":"LitCovid-PubTator"},{"subj":"159","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T40","span":{"begin":173,"end":230},"obj":"Sentence"},{"id":"T41","span":{"begin":231,"end":546},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T40","pred":"source","obj":"LitCovid-sentences"},{"subj":"T41","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#acec93","default":true},{"id":"LitCovid-PD-MONDO","color":"#ec93c6"},{"id":"LitCovid-PD-CHEBI","color":"#93e0ec"},{"id":"LitCovid-PubTator","color":"#ecde93"},{"id":"LitCovid-sentences","color":"#c493ec"}]}]}}