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PMC:7510993 / 6778-8587 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 1626-1630 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T4 1675-1679 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T50 49-57 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 183-190 Disease denotes malaria http://purl.obolibrary.org/obo/MONDO_0005136
T52 491-499 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 565-572 Disease denotes malaria http://purl.obolibrary.org/obo/MONDO_0005136
T54 1390-1402 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T55 1431-1433 Disease denotes TB http://purl.obolibrary.org/obo/MONDO_0018076
T56 1598-1600 Disease denotes TB http://purl.obolibrary.org/obo/MONDO_0018076

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 578-580 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T32 639-641 http://purl.obolibrary.org/obo/CLO_0037161 denotes en

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 265-268 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T4 358-361 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T5 522-525 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T6 578-580 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T7 639-641 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T8 651-654 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T9 756-759 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T10 832-835 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T11 1023-1026 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T12 1106-1109 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T13 1206-1209 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T14 1242-1245 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T15 1288-1291 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T16 1363-1366 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T17 1442-1445 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001
T18 1638-1641 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248
T20 1669-1672 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248
T22 1738-1741 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248
T24 1786-1789 Chemical denotes BCG http://purl.obolibrary.org/obo/CHEBI_41001

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
138 239-263 Species denotes bacillus Calmette–Guérin Tax:33892
139 1043-1049 Species denotes people Tax:9606
140 1423-1429 Species denotes people Tax:9606
141 265-268 Species denotes BCG Tax:33892
142 358-361 Species denotes BCG Tax:33892
143 522-525 Species denotes BCG Tax:33892
144 651-654 Species denotes BCG Tax:33892
145 756-759 Species denotes BCG Tax:33892
146 832-835 Species denotes BCG Tax:33892
147 1023-1026 Species denotes BCG Tax:33892
148 1106-1109 Species denotes BCG Tax:33892
149 1206-1209 Species denotes BCG Tax:33892
150 1242-1245 Species denotes BCG Tax:33892
151 1288-1291 Species denotes BCG Tax:33892
152 1363-1366 Species denotes BCG Tax:33892
153 1442-1445 Species denotes BCG Tax:33892
154 1786-1789 Species denotes BCG Tax:33892
155 49-57 Disease denotes COVID-19 MESH:C000657245
156 183-190 Disease denotes malaria MESH:D008288
157 491-499 Disease denotes COVID-19 MESH:C000657245
158 565-572 Disease denotes malaria MESH:D008288
159 1390-1402 Disease denotes tuberculosis MESH:D014376

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T37 0-282 Sentence denotes Regarding region-specific host susceptibility to COVID-19, we collected data on the following three epidemiologic properties: the proportion of the population aged over 65 years, the malaria incidence (per year), and information regarding bacillus Calmette–Guérin (BCG) vaccination.
T38 283-509 Sentence denotes We included these attributes in our analyses based on the assumptions that BCG vaccination and/or recurrent treatment with anti-malarial medications could be associated with providing some protection against COVID-19 [13, 14].
T39 510-1435 Sentence denotes We compiled BCG data from the WHO (https://www.who.int/malaria/data/en/) and (https://apps.who.int/gho/data/view.main.80500?lang=en) and the BCG Atlas Team (http://www.bcgatlas.org/) on the following five attributes: i) the number of years since BCG vaccination was started (BCG_year); ii) the present situation regarding BCG vaccination (BCG_type), split into all vaccinated, partly vaccinated, vaccinated once in the past, or never vaccinated; iii) the relative frequency of post-1980 (i.e., the past 40 years) BCG vaccination for people aged less than 1 year old (BCG_rate); iv) the number of BCG vaccinations (MultipleBCG), describing countries as never having vaccinated their citizens with BCG, vaccinated their citizens with BCG only once, vaccinated their citizens with BCG multiple times in the past, or currently vaccinate their citizens with BCG multiple times; and v) tuberculosis cases per 1 million people (TB).
T40 1436-1493 Sentence denotes These BCG-related variables are strongly intercorrelated.
T41 1494-1809 Sentence denotes Therefore, we reduced the dimensions of these variables (BCG_year, BCG_type, BCG_rate, MultipleBCG, and TB) by extracting the first axis of the PCA analysis: the score of the PCA 1 axis was negatively correlated with the five variables, so the PCA 1 score multiplied by –1 was defined as the BCG vaccination effect.