PMC:7510993 / 5283-6208 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7510993","sourcedb":"PMC","sourceid":"7510993","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7510993","text":"rom various sources (see S1 Appendix for a list of data sources for the COVID-19 cases). We then calculated the length of time (in days) since the onset of COVID-19 spread as defined by the date of the first confirmed case in each country or region. We also examined the number of SARS-CoV-2 PCR tests conducted based on data published by the World Health Organization (WHO) (https://ourworldindata.org/covid-testing) to assess the influence of sampling effort on the number of confirmed cases of COVID-19.\nFor each country or region, we compiled several environmental variables. For mapping cases of COVID-19, the longitude and latitude of the largest city and area for each country or region were extracted from GADM maps and data (https://gadm.org/index.html). Based on the geocoordinates of the cities, we collected the climatic data of mean precipitation (mm month–1) and temperature (°C) from January to June (WorldClim","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":28,"end":36},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma14542"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T45","span":{"begin":72,"end":80},"obj":"Disease"},{"id":"T46","span":{"begin":156,"end":164},"obj":"Disease"},{"id":"T47","span":{"begin":281,"end":289},"obj":"Disease"},{"id":"T48","span":{"begin":497,"end":505},"obj":"Disease"},{"id":"T49","span":{"begin":601,"end":609},"obj":"Disease"}],"attributes":[{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T45","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T22","span":{"begin":25,"end":27},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T23","span":{"begin":41,"end":42},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T24","span":{"begin":296,"end":301},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T25","span":{"begin":356,"end":368},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T26","span":{"begin":409,"end":416},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"attributes":[{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"108","span":{"begin":281,"end":291},"obj":"Species"},{"id":"111","span":{"begin":72,"end":80},"obj":"Disease"},{"id":"112","span":{"begin":156,"end":164},"obj":"Disease"},{"id":"113","span":{"begin":497,"end":505},"obj":"Disease"},{"id":"115","span":{"begin":601,"end":609},"obj":"Disease"}],"attributes":[{"id":"A108","pred":"tao:has_database_id","subj":"108","obj":"Tax:2697049"},{"id":"A111","pred":"tao:has_database_id","subj":"111","obj":"MESH:C000657245"},{"id":"A112","pred":"tao:has_database_id","subj":"112","obj":"MESH:C000657245"},{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"MESH:C000657245"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"MESH:C000657245"},{"subj":"108","pred":"source","obj":"LitCovid-PubTator"},{"subj":"111","pred":"source","obj":"LitCovid-PubTator"},{"subj":"112","pred":"source","obj":"LitCovid-PubTator"},{"subj":"113","pred":"source","obj":"LitCovid-PubTator"},{"subj":"115","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T30","span":{"begin":89,"end":249},"obj":"Sentence"},{"id":"T31","span":{"begin":250,"end":506},"obj":"Sentence"},{"id":"T32","span":{"begin":507,"end":579},"obj":"Sentence"},{"id":"T33","span":{"begin":580,"end":763},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T30","pred":"source","obj":"LitCovid-sentences"},{"subj":"T31","pred":"source","obj":"LitCovid-sentences"},{"subj":"T32","pred":"source","obj":"LitCovid-sentences"},{"subj":"T33","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecb4","default":true},{"id":"LitCovid-PD-MONDO","color":"#ec9a93"},{"id":"LitCovid-PD-CLO","color":"#93a5ec"},{"id":"LitCovid-PubTator","color":"#bfec93"},{"id":"LitCovid-sentences","color":"#ec93d9"}]}]}}