
PMC:7510743
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 6-9 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T2 | 103-106 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T3 | 222-225 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T4 | 257-260 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T5 | 418-424 | Body_part | denotes | Saliva | http://purl.org/sig/ont/fma/fma59862 |
T6 | 505-510 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T7 | 515-521 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T8 | 1233-1236 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T9 | 1388-1391 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T10 | 1950-1953 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T11 | 2117-2120 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T12 | 2182-2185 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T13 | 2397-2405 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
T14 | 2528-2531 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T15 | 2578-2581 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T16 | 2608-2616 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
T17 | 2640-2646 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T18 | 2704-2707 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T19 | 2944-2952 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
T20 | 3003-3006 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T21 | 3181-3184 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T22 | 3414-3417 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T23 | 3426-3432 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T24 | 3515-3521 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T25 | 3677-3680 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T26 | 3717-3722 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T27 | 3731-3737 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T28 | 3879-3882 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T29 | 4043-4046 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T30 | 4225-4230 | Body_part | denotes | urine | http://purl.org/sig/ont/fma/fma12274 |
T31 | 4303-4309 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T32 | 4364-4369 | Body_part | denotes | urine | http://purl.org/sig/ont/fma/fma12274 |
T33 | 4509-4512 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T34 | 4525-4531 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T35 | 4573-4576 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T36 | 4728-4733 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T37 | 4741-4747 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T38 | 4775-4778 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T39 | 4831-4834 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T40 | 4838-4843 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T41 | 4922-4925 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T42 | 4934-4939 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T43 | 5014-5020 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T44 | 5115-5118 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T45 | 5122-5127 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T46 | 5322-5327 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T47 | 5388-5391 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T48 | 5647-5652 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
T49 | 5765-5768 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T50 | 5968-5971 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T51 | 5975-5981 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T52 | 6077-6083 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T53 | 6237-6243 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
T54 | 6391-6399 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
T55 | 6448-6451 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T56 | 6557-6561 | Body_part | denotes | Shin | http://purl.org/sig/ont/fma/fma24985 |
T57 | 6594-6597 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 418-424 | Body_part | denotes | Saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T2 | 505-510 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T3 | 515-521 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T4 | 2640-2646 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T5 | 3426-3432 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T6 | 3515-3521 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T7 | 3717-3722 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T8 | 3731-3737 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T9 | 4225-4230 | Body_part | denotes | urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
T10 | 4364-4369 | Body_part | denotes | urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
T11 | 4728-4733 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T12 | 4741-4747 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T13 | 4838-4843 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T14 | 4934-4939 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T15 | 5014-5020 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T16 | 5122-5127 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T17 | 5322-5327 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T18 | 5647-5652 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
T19 | 5975-5981 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T20 | 6077-6083 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
T21 | 6237-6243 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 68-76 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T2 | 165-173 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T3 | 211-219 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T4 | 386-394 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T5 | 472-481 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T6 | 493-503 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T7 | 608-616 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T8 | 629-676 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T9 | 629-662 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T10 | 678-686 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T11 | 756-765 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T12 | 894-902 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T13 | 1154-1162 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T14 | 1203-1211 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T15 | 1322-1336 | Disease | denotes | infectiousness | http://purl.obolibrary.org/obo/MONDO_0005550 |
T16 | 1409-1417 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T17 | 1467-1475 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T18 | 1694-1702 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T19 | 1727-1735 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T20 | 1991-1999 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T21 | 2517-2525 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T22 | 3623-3670 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T23 | 3623-3656 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T24 | 4820-4828 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T25 | 4895-4903 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T26 | 5104-5112 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T27 | 5159-5169 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T28 | 5726-5734 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 5737-5746 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T30 | 5888-5896 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T31 | 5957-5965 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T32 | 6012-6021 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T33 | 6474-6482 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T34 | 6656-6664 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T35 | 6898-6908 | Disease | denotes | Infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T36 | 7090-7106 | Disease | denotes | virus infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
T37 | 7111-7121 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 430-436 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T2 | 791-792 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T3 | 905-909 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T4 | 1227-1232 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
T5 | 1291-1292 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T6 | 1344-1349 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T7 | 1651-1653 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T8 | 2126-2127 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T9 | 2448-2450 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
T10 | 2497-2503 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T11 | 2556-2558 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T12 | 2660-2662 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T13 | 2681-2687 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T14 | 2863-2864 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T15 | 3134-3135 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T16 | 3589-3591 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T17 | 3689-3690 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T18 | 3714-3715 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T19 | 4268-4269 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T20 | 4303-4309 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T21 | 4398-4404 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T22 | 4489-4491 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
T23 | 4525-4531 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T24 | 5170-5175 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T25 | 5202-5207 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T26 | 5300-5305 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T27 | 5584-5589 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T28 | 5656-5657 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T29 | 5798-5799 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T30 | 6026-6027 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T31 | 6055-6060 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T32 | 6087-6088 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T33 | 6157-6162 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T34 | 6187-6190 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T35 | 6535-6537 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
T36 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0002421 | denotes | Cho |
T37 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0052479 | denotes | Cho |
T38 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0052480 | denotes | Cho |
T39 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0052483 | denotes | Cho |
T40 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0052484 | denotes | Cho |
T41 | 6565-6568 | http://purl.obolibrary.org/obo/CLO_0052485 | denotes | Cho |
T42 | 6838-6839 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T43 | 7090-7095 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 6535-6537 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
T2 | 6569-6571 | Chemical | denotes | SI | http://purl.obolibrary.org/obo/CHEBI_90326 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
2 | 54-62 | Species | denotes | Children | Tax:9606 |
3 | 68-76 | Disease | denotes | COVID-19 | MESH:C000657245 |
8 | 211-221 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
9 | 372-380 | Species | denotes | children | Tax:9606 |
10 | 386-394 | Disease | denotes | COVID-19 | MESH:C000657245 |
11 | 472-481 | Disease | denotes | infection | MESH:D007239 |
26 | 629-676 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
27 | 678-688 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
28 | 693-701 | Species | denotes | children | Tax:9606 |
29 | 894-904 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
30 | 985-998 | Species | denotes | coronaviruses | Tax:11118 |
31 | 1203-1213 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
32 | 1217-1225 | Species | denotes | children | Tax:9606 |
33 | 1409-1419 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
34 | 1453-1461 | Species | denotes | children | Tax:9606 |
35 | 587-606 | Disease | denotes | coronavirus disease | MESH:D018352 |
36 | 608-616 | Disease | denotes | COVID-19 | MESH:C000657245 |
37 | 756-765 | Disease | denotes | infection | MESH:D007239 |
38 | 1154-1162 | Disease | denotes | COVID-19 | MESH:C000657245 |
39 | 1467-1475 | Disease | denotes | COVID-19 | MESH:C000657245 |
46 | 1512-1520 | Species | denotes | patients | Tax:9606 |
47 | 1641-1649 | Species | denotes | children | Tax:9606 |
48 | 1727-1737 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
49 | 1991-2001 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
50 | 2023-2032 | Species | denotes | 2019-nCoV | Tax:2697049 |
51 | 1694-1702 | Disease | denotes | COVID-19 | MESH:C000657245 |
56 | 2323-2331 | Species | denotes | children | Tax:9606 |
57 | 2517-2527 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
58 | 2542-2550 | Species | denotes | children | Tax:9606 |
59 | 2663-2671 | Species | denotes | children | Tax:9606 |
64 | 3375-3377 | Gene | denotes | mL | Gene:21832 |
65 | 3318-3320 | Gene | denotes | mL | Gene:21832 |
66 | 3054-3056 | Gene | denotes | mL | Gene:21832 |
67 | 2801-2803 | Gene | denotes | mL | Gene:21832 |
74 | 4004-4006 | Gene | denotes | mL | Gene:21832 |
75 | 3623-3670 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
76 | 3777-3785 | Species | denotes | children | Tax:9606 |
77 | 4154-4162 | Species | denotes | patients | Tax:9606 |
78 | 4202-4210 | Species | denotes | patients | Tax:9606 |
79 | 3791-3810 | Disease | denotes | coronavirus disease | MESH:D018352 |
84 | 4463-4465 | Gene | denotes | mL | Gene:21832 |
85 | 4253-4261 | Species | denotes | patients | Tax:9606 |
86 | 4389-4397 | Species | denotes | patients | Tax:9606 |
87 | 4480-4487 | Species | denotes | patient | Tax:9606 |
91 | 4670-4672 | Gene | denotes | mL | Gene:21832 |
92 | 4545-4553 | Species | denotes | children | Tax:9606 |
93 | 4633-4641 | Species | denotes | children | Tax:9606 |
100 | 4820-4830 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
101 | 4881-4889 | Species | denotes | children | Tax:9606 |
102 | 5077-5085 | Species | denotes | children | Tax:9606 |
103 | 5104-5114 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
104 | 5478-5485 | Species | denotes | infants | Tax:9606 |
105 | 4895-4903 | Disease | denotes | COVID-19 | MESH:C000657245 |
110 | 5838-5841 | Gene | denotes | aid | Gene:57379 |
111 | 5930-5938 | Species | denotes | children | Tax:9606 |
112 | 5726-5746 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
113 | 5888-5896 | Disease | denotes | COVID-19 | MESH:C000657245 |
118 | 5957-5967 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
119 | 6298-6306 | Species | denotes | children | Tax:9606 |
120 | 6351-6359 | Species | denotes | children | Tax:9606 |
121 | 6012-6021 | Disease | denotes | infection | MESH:D007239 |
124 | 6642-6650 | Species | denotes | children | Tax:9606 |
125 | 6656-6664 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-96 | Sentence | denotes | Viral RNA Load in Mildly Symptomatic and Asymptomatic Children with COVID-19, Seoul, South Korea |
T2 | 97-180 | Sentence | denotes | Viral RNA Load in Mildly Symptomatic and Asymptomatic Children with COVID-19, Seoul |
T3 | 182-190 | Sentence | denotes | Abstract |
T4 | 191-417 | Sentence | denotes | Along with positive SARS-CoV-2 RNA in nasopharyngeal swabs, viral RNA was detectable at high concentration for >3 weeks in fecal samples from 12 mildly symptomatic and asymptomatic children with COVID-19 in Seoul, South Korea. |
T5 | 418-482 | Sentence | denotes | Saliva also tested positive during the early phase of infection. |
T6 | 483-558 | Sentence | denotes | If proven infectious, feces and saliva could serve as transmission sources. |
T7 | 560-851 | Sentence | denotes | In the current pandemic of coronavirus disease (COVID-19), detecting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in children suspected of having the disease is essential for both infection control and establishing a definite causal relationship in unprecedented cases (1,2). |
T8 | 852-1030 | Sentence | denotes | However, efforts are hindered by negative SARS-CoV-2 test results for respiratory specimens and possible cross-reactivity with other coronaviruses among seropositive cases (2,3). |
T9 | 1031-1226 | Sentence | denotes | Little is known about the value of various samples other than nasopharyngeal or oropharyngeal swab specimens in diagnosing COVID-19 and understanding the viral dynamics of SARS-CoV-2 in children. |
T10 | 1227-1365 | Sentence | denotes | Virus RNA was persistently detected in rectal swab specimens in a previous study, although the infectiousness of the virus is unknown (4). |
T11 | 1366-1476 | Sentence | denotes | We analyzed the viral RNA load kinetics of SARS-CoV-2 in various clinical specimens in children with COVID-19. |
T12 | 1477-1608 | Sentence | denotes | In South Korea, all confirmed case-patients, regardless of disease severity, must be isolated in hospitals or isolation facilities. |
T13 | 1609-1936 | Sentence | denotes | For this study, we included all children <18 years of age who were confirmed to have COVID-19 by positive results for SARS-CoV-2 in combined nasopharyngeal and oropharyngeal swab specimens and who were hospitalized in Seoul Metropolitan Government–Seoul National University Boramae Medical Center during March 8–April 28, 2020. |
T14 | 1937-2077 | Sentence | denotes | We extracted RNA from clinical specimens and detected SARS-CoV-2 by using the Allplex 2019-nCoV Assay kit (Seegene, http://www.seegene.com). |
T15 | 2078-2186 | Sentence | denotes | We performed quantitation of the viral RNA with a standard curve constructed using in vitro transcribed RNA. |
T16 | 2187-2307 | Sentence | denotes | This study was approved by the institutional review board at SMG-SNU Boramae Medical Center; written consent was waived. |
T17 | 2308-2415 | Sentence | denotes | We included 12 children in the study; 9 were mildly symptomatic and 3 were asymptomatic (Appendix Table 1). |
T18 | 2416-2466 | Sentence | denotes | Median age was 6.5 years (range 27 days–16 years). |
T19 | 2467-2626 | Sentence | denotes | Nasopharyngeal swab specimens tested positive for SARS-CoV-2 RNA in all 12 children, and 11 (92%) had positive RNA in their fecal specimens (Appendix Table 2). |
T20 | 2627-2697 | Sentence | denotes | We collected saliva samples from 11 children; 8 (73%) tested positive. |
T21 | 2698-2866 | Sentence | denotes | Viral RNA load in the nasopharyngeal swabs peaked early at median 7.56 (range 6.19–10.56) log10 copies/mL and decreased over time (p<0.001 for trend) (Figure, panel A). |
T22 | 2867-2962 | Sentence | denotes | The positivity of the specimens was 75% during week 2 and 55% during week 3 (Appendix Table 2). |
T23 | 2963-3137 | Sentence | denotes | In comparison, the median initial fecal RNA load was 7.68 (range <4.10–10.27) log10 copies/mL and remained steadily high (p = 0.148 for trend) for >3 weeks (Figure, panel B). |
T24 | 3138-3169 | Sentence | denotes | Fecal positivity remained >80%. |
T25 | 3170-3390 | Sentence | denotes | The median RNA load in fecal samples was significantly higher than that for nasopharyngeal swab specimens during week 2 (7.26 vs. 6.19 log10 copies/mL; p = 0.006) and week 3 (7.61 versus 5.49 log10 copies/mL; p = 0.006). |
T26 | 3391-3500 | Sentence | denotes | Except for 1 case, the RNA load in saliva declined rapidly with time (p = 0.003 for trend) (Figure, panel C). |
T27 | 3501-3603 | Sentence | denotes | Positivity in saliva samples was 80% in week 1 but dropped sharply to 33% in week 2 and 11% in week 3. |
T28 | 3604-3834 | Sentence | denotes | Figure Changes in severe acute respiratory syndrome coronavirus 2 viral RNA load in A) nasopharyngeal swabs, B) feces, and C) saliva of mildly symptomatic and asymptomatic children with coronavirus disease over time, South Korea. |
T29 | 3835-3938 | Sentence | denotes | The thick red line indicates trend in viral RNA load over time, and the shaded areas represent 95% CIs. |
T30 | 3939-4008 | Sentence | denotes | The dashed line indicates the detection limit (1.25 × 104 copies/mL). |
T31 | 4009-4085 | Sentence | denotes | Specimens with undetectable viral RNA loads are shown under the dashed line. |
T32 | 4086-4211 | Sentence | denotes | Days after onset indicates days after symptom onset for symptomatic patients, days after diagnosis for asymptomatic patients. |
T33 | 4212-4353 | Sentence | denotes | We collected urine specimens from the 12 patients after a median of 3 (range 0–8) days and plasma specimens at 2 (range 0–8) days from onset. |
T34 | 4354-4467 | Sentence | denotes | Of these, urine samples of 2 (17%) patients tested positive (median load 5.69 [range 3.82–7.55] log10 copies/mL). |
T35 | 4468-4532 | Sentence | denotes | Only 1 (8%) patient, 27 days of age, had RNA detected in plasma. |
T36 | 4533-4685 | Sentence | denotes | Symptomatic children had higher initial RNA load in nasopharyngeal swab specimens than asymptomatic children (9.01 vs. 6.32 log10 copies/mL; p = 0.048). |
T37 | 4686-4792 | Sentence | denotes | We observed no significant differences in feces and in saliva and no correlation between RNA load and age. |
T38 | 4793-4904 | Sentence | denotes | In this study, we detected SARS-CoV-2 RNA in feces of 92% of mildly ill or asymptomatic children with COVID-19. |
T39 | 4905-5086 | Sentence | denotes | In addition, the RNA load in feces remained steadily high, whereas that in nasopharyngeal swab specimens and saliva declined with time in both symptomatic and asymptomatic children. |
T40 | 5087-5283 | Sentence | denotes | The detection of SARS-CoV-2 RNA in feces does not necessarily mean that infectious virus is present; thus, lack of virus isolation in our study limits interpretation in the context of infectivity. |
T41 | 5284-5405 | Sentence | denotes | However, viable virus was isolated in feces in previous studies, and infectivity was dependent on viral RNA load (3,5,6). |
T42 | 5406-5615 | Sentence | denotes | Considering these findings, proper handwashing when changing diapers in infants and adequate hygiene measures in restrooms are recommended to prevent the potential spread of the virus among household contacts. |
T43 | 5616-5815 | Sentence | denotes | Our findings also suggest that feces is a promising and reliable source for detecting both current and recent SARS-CoV-2 infection because the viral RNA is present in high loads for a prolonged time. |
T44 | 5816-5939 | Sentence | denotes | Fecal specimens could aid in seeking the etiologic relationship between COVID-19 and unexpected manifestations in children. |
T45 | 5940-6049 | Sentence | denotes | We also detected SARS-CoV-2 RNA in saliva during the early phase of the infection for a short period of time. |
T46 | 6050-6209 | Sentence | denotes | Live virus was isolated in saliva in a previous study, and the possibility of airborne transmission of the virus through normal speaking has been raised (7,8). |
T47 | 6210-6390 | Sentence | denotes | Although the viral load in saliva drops rapidly, our findings suggest the necessity for children to wear masks, especially in schools, where children would talk in close proximity. |
T48 | 6391-6399 | Sentence | denotes | Appendix |
T49 | 6400-6492 | Sentence | denotes | Additional information about the study of viral RNA load in children with COVID-19 in Seoul. |
T50 | 6494-6530 | Sentence | denotes | Suggested citation for this article: |
T51 | 6531-6587 | Sentence | denotes | Han MS, Seong M-W, Kim N, Shin S, Cho SI, Park H, et al. |
T52 | 6588-6672 | Sentence | denotes | Viral RNA load in mildly symptomatic and asymptomatic children with COVID-19, Seoul. |
T53 | 6673-6690 | Sentence | denotes | Emerg Infect Dis. |
T54 | 6691-6754 | Sentence | denotes | 2020 month [date cited]. https://doi.org/10.3201/eid2610.202449 |
T55 | 6755-6808 | Sentence | denotes | 1 These authors contributed equally to this article. |
T56 | 6810-7046 | Sentence | denotes | About the Author Dr. Han is a clinical assistant professor in the Division of Pediatric Infectious Diseases, Department of Pediatrics at Seoul Metropolitan Government–Seoul National University Boramae Medical Center, Seoul, South Korea. |
T57 | 7047-7158 | Sentence | denotes | Her research interests include respiratory virus infections and infectious diseases in immunocompromised hosts. |