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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 155-167 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236
T2 408-425 Body_part denotes base of the heart http://purl.org/sig/ont/fma/fma223286
T3 420-425 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T4 452-460 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T5 476-486 Body_part denotes troponin T http://purl.org/sig/ont/fma/fma67900
T6 476-484 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T7 570-575 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 931-943 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236
T9 998-1012 Body_part denotes left ventricle http://purl.org/sig/ont/fma/fma7101
T10 1067-1082 Body_part denotes right ventricle http://purl.org/sig/ont/fma/fma7098
T11 1109-1114 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 1264-1269 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T13 1366-1376 Body_part denotes adrenaline http://purl.org/sig/ont/fma/fma67243

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 155-167 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T2 162-167 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T3 420-425 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T4 570-575 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 931-943 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T6 938-943 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T7 1109-1114 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 1264-1269 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 31-39 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 74-96 Disease denotes infective endocarditis http://purl.obolibrary.org/obo/MONDO_0000565
T3 84-96 Disease denotes endocarditis http://purl.obolibrary.org/obo/MONDO_0005025
T4 146-167 Disease denotes bicuspid aortic valve http://purl.obolibrary.org/obo/MONDO_0013902|http://purl.obolibrary.org/obo/MONDO_0024523
T6 173-191 Disease denotes aortic coarctation http://purl.obolibrary.org/obo/MONDO_0007345
T7 248-257 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T8 650-661 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T9 688-690 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T10 804-814 Disease denotes (AV) block http://purl.obolibrary.org/obo/MONDO_0000465
T11 891-911 Disease denotes aortic regurgitation http://purl.obolibrary.org/obo/MONDO_0005648
T12 972-979 Disease denotes abscess http://purl.obolibrary.org/obo/MONDO_0005227
T13 1186-1194 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 1195-1206 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T15 1255-1275 Disease denotes complete heart block http://purl.obolibrary.org/obo/MONDO_0000468
T16 1505-1513 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 1598-1620 Disease denotes infective endocarditis http://purl.obolibrary.org/obo/MONDO_0000565
T18 1608-1620 Disease denotes endocarditis http://purl.obolibrary.org/obo/MONDO_0005025
T19 1646-1655 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 100-101 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 117-121 http://purl.obolibrary.org/obo/CLO_0001564 denotes A 20
T3 117-121 http://purl.obolibrary.org/obo/CLO_0050194 denotes A 20
T4 155-161 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T5 162-167 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T6 173-179 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T7 378-379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 420-425 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T9 420-425 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T10 420-425 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T11 420-425 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T12 570-575 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T13 589-590 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T14 754-755 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15 848-849 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T16 891-897 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T17 923-924 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 931-937 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T19 938-943 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T20 960-966 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T21 988-991 http://purl.obolibrary.org/obo/CLO_0002755 denotes D–F
T22 1109-1114 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T23 1264-1269 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T24 1264-1269 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T25 1264-1269 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T26 1264-1269 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T27 1316-1324 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T28 1366-1376 http://purl.obolibrary.org/obo/CHEBI_33568 denotes adrenaline
T29 1452-1455 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T30 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 31-39 Disease denotes COVID-19 MESH:C000657245
3 74-96 Disease denotes infective endocarditis MESH:D004696
15 717-723 Chemical denotes oxygen MESH:D010100
16 146-167 Disease denotes bicuspid aortic valve MESH:C562388
17 173-191 Disease denotes aortic coarctation MESH:D001017
18 238-246 Disease denotes vomiting MESH:D014839
19 248-257 Disease denotes diarrhoea MESH:D003967
20 269-274 Disease denotes fever MESH:D005334
21 287-292 Disease denotes cough MESH:D003371
22 551-568 Disease denotes sinus tachycardia MESH:D013616
23 644-661 Disease denotes COVID pneumonitis MESH:C000657245
24 787-814 Disease denotes atrioventricular (AV) block MESH:D054537
25 831-840 Disease denotes ischaemia MESH:D007511
34 1237-1244 Species denotes patient Tax:9606
35 1366-1376 Chemical denotes adrenaline MESH:D004837
36 891-911 Disease denotes aortic regurgitation MESH:D001022
37 1037-1057 Disease denotes systolic dysfunction MESH:D006331
38 1186-1194 Disease denotes COVID-19 MESH:C000657245
39 1195-1206 Disease denotes pneumonitis MESH:D011014
40 1264-1275 Disease denotes heart block MESH:D006327
41 1343-1351 Disease denotes asystole MESH:D006323
45 1505-1513 Disease denotes COVID-19 MESH:C000657245
46 1598-1620 Disease denotes infective endocarditis MESH:D004696
47 1646-1655 Disease denotes infection MESH:D007239

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 74-96 Phenotype denotes infective endocarditis http://purl.obolibrary.org/obo/HP_0006689
T2 146-167 Phenotype denotes bicuspid aortic valve http://purl.obolibrary.org/obo/HP_0001647
T3 173-191 Phenotype denotes aortic coarctation http://purl.obolibrary.org/obo/HP_0001680
T4 238-246 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013
T5 248-257 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T6 259-274 Phenotype denotes low grade fever http://purl.obolibrary.org/obo/HP_0011134
T7 276-292 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T8 353-361 Phenotype denotes crackles http://purl.obolibrary.org/obo/HP_0030830
T9 551-568 Phenotype denotes sinus tachycardia http://purl.obolibrary.org/obo/HP_0011703
T10 741-752 Phenotype denotes haemoptysis http://purl.obolibrary.org/obo/HP_0002105
T11 891-911 Phenotype denotes aortic regurgitation http://purl.obolibrary.org/obo/HP_0001659
T12 972-979 Phenotype denotes abscess http://purl.obolibrary.org/obo/HP_0025615
T13 1255-1275 Phenotype denotes complete heart block http://purl.obolibrary.org/obo/HP_0001709
T14 1598-1620 Phenotype denotes infective endocarditis http://purl.obolibrary.org/obo/HP_0006689

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-115 Sentence denotes Collateral implications of the COVID-19 pandemic: belated presentation of infective endocarditis in a young patient
T2 117-325 Sentence denotes A 20-year-old man with known bicuspid aortic valve, and aortic coarctation repair in childhood presented with 4 weeks of vomiting, diarrhoea, low grade fever, productive cough, and progressive breathlessness.
T3 326-426 Sentence denotes Auscultation revealed fine crackles bilaterally and a loud systolic murmur at the base of the heart.
T4 427-526 Sentence denotes Inflammatory markers and troponin were elevated (troponin T 388 ng/L; cut-off for normal <14 ng/L).
T5 527-569 Sentence denotes Initial ECG showed only sinus tachycardia.
T6 570-662 Sentence denotes Chest X-ray (Panel A) showed bilateral airspace infiltrates suspicious of COVID pneumonitis.
T7 663-753 Sentence denotes Shortly after admission, he deteriorated, with rising oxygen requirements and haemoptysis.
T8 754-851 Sentence denotes A repeat ECG showed first-degree atrioventricular (AV) block with widespread ischaemia (Panel B).
T9 852-993 Sentence denotes Bedside echocardiogram revealed severe aortic regurgitation (Panel C), a large aortic valve vegetation, and aortic root abscess (Panels D–F).
T10 994-1094 Sentence denotes The left ventricle was dilated with severe systolic dysfunction, and the right ventricle was normal.
T11 1095-1207 Sentence denotes Incomplete CT chest (Panel G) showed bilateral multilobular consolidation, not typical for COVID-19 pneumonitis.
T12 1208-1433 Sentence denotes While in the CT scanner, the patient developed complete heart block deteriorating into pulseless electrical activity (PEA) followed by asystole refractory to adrenaline and both transcutaneous and transvenous pacing attempts.
T13 1434-1656 Sentence denotes With this case we aim to emphasize that even in a pandemic period like COVID-19, it is prudent to seek medical help especially for those at high risk of developing infective endocarditis and who have symptoms of infection.
T14 1657-1734 Sentence denotes Timely presentation is essential as any delay can lead to fatal consequences.
T15 1735-1756 Sentence denotes Conflict of interest:
T16 1757-1866 Sentence denotes The authors have submitted their declaration which can be found in the article Supplementary Material online.
T17 1868-1890 Sentence denotes Supplementary Material
T18 1891-1955 Sentence denotes ehaa633_Supplementary_Data Click here for additional data file.