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PMC:7499654 / 98-830 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 207-219 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T3 316-328 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T4 370-383 Body_part denotes cell surfaces http://purl.org/sig/ont/fma/fma67653
T5 370-374 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 31-39 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 71-79 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 243-252 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 91-92 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 124-129 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 364-374 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cell
T4 691-692 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 207-219 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T3 316-328 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T4 329-340 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T5 615-624 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T6 617-624 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T7 650-658 Chemical denotes LacdiNAc http://purl.obolibrary.org/obo/CHEBI_61190

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 521-534 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T2 708-723 http://purl.obolibrary.org/obo/GO_0006493 denotes O-glycosylation
T3 710-723 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-8 Sentence denotes Abstract
T4 9-175 Sentence denotes The novel coronavirus SARS-CoV-2, the infective agent causing COVID-19, is having a global impact both in terms of human disease as well as socially and economically.
T5 176-384 Sentence denotes Its heavily glycosylated spike glycoprotein is fundamental for the infection process, via its receptor binding domains interaction with the glycoprotein angiotensin converting enzyme 2 on human cell surfaces.
T6 385-570 Sentence denotes We therefore utilized an integrated glycomic and glycoproteomic analytical strategy to characterise both N- and O- glycan site specific glycosylation within the receptor binding domain.
T7 571-732 Sentence denotes We demonstrate the presence of complex type N-glycans with unusual fucosylated LacdiNAc at both sites N331 and N343 and a single site of O-glycosylation on T323.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
13 329-360 Gene denotes angiotensin converting enzyme 2 Gene:59272
14 13-30 Species denotes novel coronavirus Tax:2697049
15 31-41 Species denotes SARS-CoV-2 Tax:2697049
16 124-129 Species denotes human Tax:9606
17 364-369 Species denotes human Tax:9606
18 490-506 Chemical denotes N- and O- glycan
19 615-624 Chemical denotes N-glycans
20 673-677 Chemical denotes N331
21 682-686 Chemical denotes N343
22 71-79 Disease denotes COVID-19 MESH:C000657245
23 243-252 Disease denotes infection MESH:D007239