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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 51-63 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 305-317 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T3 414-426 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T4 468-481 Body_part denotes cell surfaces http://purl.org/sig/ont/fma/fma67653
T5 468-472 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 34-42 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 129-137 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 169-177 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 341-350 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 189-190 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 222-227 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 462-472 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cell
T4 789-790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 51-63 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 305-317 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T3 414-426 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T4 427-438 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T5 713-722 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T6 715-722 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T7 748-756 Chemical denotes LacdiNAc http://purl.obolibrary.org/obo/CHEBI_61190

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 619-632 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T2 806-821 http://purl.obolibrary.org/obo/GO_0006493 denotes O-glycosylation
T3 808-821 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-87 Sentence denotes Site-specific characterisation of SARS-CoV-2 spike glycoprotein receptor binding domain
T2 89-97 Sentence denotes Abstract
T3 98-106 Sentence denotes Abstract
T4 107-273 Sentence denotes The novel coronavirus SARS-CoV-2, the infective agent causing COVID-19, is having a global impact both in terms of human disease as well as socially and economically.
T5 274-482 Sentence denotes Its heavily glycosylated spike glycoprotein is fundamental for the infection process, via its receptor binding domains interaction with the glycoprotein angiotensin converting enzyme 2 on human cell surfaces.
T6 483-668 Sentence denotes We therefore utilized an integrated glycomic and glycoproteomic analytical strategy to characterise both N- and O- glycan site specific glycosylation within the receptor binding domain.
T7 669-830 Sentence denotes We demonstrate the presence of complex type N-glycans with unusual fucosylated LacdiNAc at both sites N331 and N343 and a single site of O-glycosylation on T323.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 34-44 Species denotes SARS-CoV-2 Tax:2697049
13 427-458 Gene denotes angiotensin converting enzyme 2 Gene:59272
14 111-128 Species denotes novel coronavirus Tax:2697049
15 129-139 Species denotes SARS-CoV-2 Tax:2697049
16 222-227 Species denotes human Tax:9606
17 462-467 Species denotes human Tax:9606
18 588-604 Chemical denotes N- and O- glycan
19 713-722 Chemical denotes N-glycans
20 771-775 Chemical denotes N331
21 780-784 Chemical denotes N343
22 169-177 Disease denotes COVID-19 MESH:C000657245
23 341-350 Disease denotes infection MESH:D007239