PMC:7499499 / 299-980
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 52-60 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T2 | 79-82 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T3 | 346-354 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T4 | 444-452 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T5 | 487-495 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T6 | 531-537 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T3 | 11-19 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T4 | 277-285 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T5 | 476-485 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T6 | 520-528 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 84-91 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T2 | 160-161 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 9 | 11-21 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 10 | 277-287 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 11 | 520-530 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 12 | 62-82 | Disease | denotes | Abbott ARCHITECT IgG | MESH:D017099 |
| 13 | 476-485 | Disease | denotes | infection | MESH:D007239 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-43 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T2 | 30-43 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 0-201 | Sentence | denotes | We offered SARS-CoV-2 reverse transcription-PCR and antibody (Abbott ARCHITECT IgG) testing, regardless of symptoms, to all residents (≥4 years) and workers in a San Francisco census tract (population: |
| T8 | 202-263 | Sentence | denotes | 5,174) at outdoor, community-mobilized events over four days. |
| T9 | 264-519 | Sentence | denotes | We estimated SARS-CoV-2 point prevalence (PCR-positive) and cumulative incidence (antibody or PCR-positive) in the census tract and evaluated risk factors for recent (PCR-positive/antibody-negative) versus prior infection (antibody-positive/PCR-negative). |
| T10 | 520-681 | Sentence | denotes | SARS-CoV-2 genome recovery and phylogenetics were used to measure viral strain diversity, establish viral lineages present, and estimate number of introductions. |