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PMC:7473770 / 9779-28528 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T44 49-53 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T45 110-116 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T46 617-621 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T47 1079-1085 Body_part denotes radius http://purl.org/sig/ont/fma/fma23463
T48 2276-2284 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T49 3289-3297 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T50 4341-4349 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T51 4350-4360 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T52 4470-4481 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T53 4535-4550 Body_part denotes pulmonary veins http://purl.org/sig/ont/fma/fma70827
T54 4631-4640 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T55 4641-4654 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T56 4641-4646 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T57 4680-4696 Body_part denotes endothelial cell http://purl.org/sig/ont/fma/fma66772
T58 4692-4696 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 4793-4801 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T60 4824-4835 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T61 4907-4913 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T62 4926-4938 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T63 5140-5152 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T64 5213-5230 Body_part denotes connective tissue http://purl.org/sig/ont/fma/fma9640
T65 5241-5255 Body_part denotes elastic fibers http://purl.org/sig/ont/fma/fma63868
T66 5260-5268 Body_part denotes collagen http://purl.org/sig/ont/fma/fma63891
T67 5288-5294 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T68 5355-5363 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T69 5364-5374 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T70 5393-5402 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T71 5412-5421 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T72 5422-5435 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T73 5422-5427 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T74 5530-5543 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T75 5530-5535 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T76 5550-5555 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T77 5651-5662 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T78 5836-5844 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T79 5845-5855 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T80 5885-5897 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T81 6160-6172 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T82 6217-6229 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T83 6311-6319 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T84 6320-6330 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T85 6343-6354 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T86 6631-6643 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T87 6759-6771 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T88 6825-6831 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T89 6883-6889 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T90 6944-6949 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T91 7059-7067 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T92 7068-7078 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T93 7095-7106 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T94 7184-7192 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T95 7200-7212 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T96 7246-7255 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T97 7315-7340 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T98 7335-7340 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T99 7402-7422 Body_part denotes alveolar macrophages http://purl.org/sig/ont/fma/fma83023
T100 7463-7475 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T101 7476-7488 Body_part denotes granulocytes http://purl.org/sig/ont/fma/fma62854
T102 7740-7751 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T103 7846-7857 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T104 7861-7873 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T105 7905-7918 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T106 7905-7910 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T107 8010-8014 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T108 8024-8035 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T109 8039-8044 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T110 8048-8060 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T111 8163-8171 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T112 8172-8182 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T113 8188-8199 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T114 8260-8264 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T115 8270-8282 Body_part denotes interstitium http://purl.org/sig/ont/fma/fma86301
T116 8290-8298 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T117 8409-8425 Body_part denotes bronchial mucosa http://purl.org/sig/ont/fma/fma62652
T118 8419-8425 Body_part denotes mucosa http://purl.org/sig/ont/fma/fma85355
T119 8451-8462 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T120 8511-8524 Body_part denotes bronchiolitis http://purl.org/sig/ont/fma/fma76497
T121 8677-8683 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T122 8725-8736 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T123 8829-8835 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T124 8917-8923 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T125 8956-8967 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T126 9177-9181 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T127 9361-9367 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T128 9396-9402 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T129 9486-9492 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T130 9813-9819 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T131 9962-9974 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T132 10164-10170 Body_part denotes Tissue http://purl.org/sig/ont/fma/fma9637
T133 10235-10239 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T134 10240-10246 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T135 10400-10406 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T136 10611-10616 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T137 10668-10674 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T138 11023-11026 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T139 11045-11051 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T140 11103-11109 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T141 11138-11149 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577
T142 11672-11680 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T143 11711-11724 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T144 11711-11716 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T145 11811-11814 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T146 11878-11884 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T147 12079-12085 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T148 12376-12387 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T149 12402-12406 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T150 12407-12413 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T151 12490-12496 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T152 12535-12538 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T153 12588-12601 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T154 12588-12593 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T155 12693-12697 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T156 12918-12928 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T157 12966-12977 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T158 13221-13225 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T159 13226-13232 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T160 13609-13615 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T161 13739-13745 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T162 13797-13808 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T163 14398-14406 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T164 14682-14695 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T165 14682-14687 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T166 14795-14806 Body_part denotes vasculature http://purl.org/sig/ont/fma/fma69050
T167 14861-14869 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T168 15414-15426 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T169 15732-15743 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T170 15789-15806 Body_part denotes cell segmentation http://purl.org/sig/ont/fma/fma242660
T171 15789-15793 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T172 15868-15872 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T173 15935-15939 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T174 15993-15997 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T175 16036-16042 Body_part denotes radius http://purl.org/sig/ont/fma/fma23463
T176 16054-16058 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T177 16136-16141 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T178 16232-16238 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T179 16294-16302 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T180 16352-16362 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T181 16387-16393 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T182 16553-16559 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T183 16738-16744 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T184 16804-16815 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T185 16851-16855 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T186 16874-16878 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T187 16879-16885 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T188 16901-16913 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T189 16941-16954 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T190 16941-16946 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T191 17002-17014 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T192 17142-17151 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T193 17298-17310 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T194 17420-17429 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T195 17456-17465 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T196 17490-17495 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T197 17518-17527 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T198 17604-17616 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T199 17728-17739 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T200 17868-17880 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T201 17982-17994 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T202 18136-18148 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T203 18253-18262 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T204 18286-18298 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T205 18331-18340 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T206 18360-18369 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T207 18394-18406 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T208 18511-18523 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T209 18539-18550 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T210 18708-18720 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T38 49-53 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T39 110-116 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T40 465-471 Body_part denotes scales http://purl.obolibrary.org/obo/UBERON_0002542
T41 617-621 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T42 1671-1676 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T43 2084-2090 Body_part denotes scales http://purl.obolibrary.org/obo/UBERON_0002542
T44 3183-3189 Body_part denotes scales http://purl.obolibrary.org/obo/UBERON_0002542
T45 3207-3229 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T46 3492-3497 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T47 3868-3873 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T48 4246-4251 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T49 4350-4360 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T50 4535-4550 Body_part denotes pulmonary veins http://purl.obolibrary.org/obo/UBERON_0002016
T51 4631-4646 Body_part denotes capillary blood http://purl.obolibrary.org/obo/UBERON_0013757
T52 4631-4640 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T53 4641-4646 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T54 4647-4654 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T55 4692-4702 Body_part denotes cell layer http://purl.obolibrary.org/obo/UBERON_0000119
T56 4907-4913 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T57 4991-4998 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T58 5140-5152 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T59 5140-5145 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T60 5146-5152 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T61 5213-5230 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T62 5224-5230 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T63 5364-5374 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T64 5393-5402 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T65 5412-5427 Body_part denotes capillary blood http://purl.obolibrary.org/obo/UBERON_0013757
T66 5412-5421 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T67 5422-5427 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T68 5428-5435 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T69 5530-5543 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T70 5530-5535 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T71 5536-5543 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T72 5550-5555 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T73 5573-5580 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T74 5736-5742 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T75 5845-5855 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T76 6160-6172 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T77 6160-6165 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T78 6166-6172 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T79 6207-6213 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0003037
T80 6217-6229 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T81 6217-6222 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T82 6223-6229 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T83 6320-6330 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T84 6631-6643 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T85 6631-6636 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T86 6637-6643 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T87 6759-6771 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T88 6759-6764 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T89 6765-6771 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T90 6825-6831 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T91 6883-6889 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T92 6960-6966 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0003037
T93 7068-7078 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T94 7184-7198 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T95 7246-7255 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T96 7861-7873 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T97 7861-7866 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T98 7867-7873 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T99 7905-7918 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T100 7905-7910 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T101 7911-7918 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T102 8172-8182 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T103 8260-8264 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T104 8409-8425 Body_part denotes bronchial mucosa http://purl.obolibrary.org/obo/UBERON_0000410
T105 8419-8425 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T106 8677-8683 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T107 8829-8835 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T108 8917-8923 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T109 9177-9181 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T110 9361-9367 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T111 9396-9402 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T112 9486-9492 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T113 9813-9819 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T114 9962-9974 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T115 9962-9967 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T116 9968-9974 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T117 10117-10123 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T118 10164-10170 Body_part denotes Tissue http://purl.obolibrary.org/obo/UBERON_0000479
T119 10235-10239 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T120 10240-10246 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T121 10400-10406 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T122 10611-10616 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T123 10668-10674 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T124 10754-10761 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T125 10839-10845 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T126 11045-11051 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T127 11103-11109 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T128 11483-11488 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T129 11541-11546 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T130 11672-11686 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T131 11711-11724 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T132 11711-11716 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T133 11717-11724 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T134 11878-11884 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T135 12079-12085 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T136 12402-12406 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T137 12407-12413 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T138 12490-12496 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T139 12535-12538 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T140 12588-12601 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T141 12588-12593 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T142 12594-12601 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T143 12693-12697 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T144 13221-13225 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T145 13226-13232 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T146 13609-13615 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T147 13739-13745 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T148 14398-14412 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T149 14682-14695 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T150 14682-14687 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T151 14688-14695 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T152 14795-14806 Body_part denotes vasculature http://purl.obolibrary.org/obo/UBERON_0002049
T153 14861-14875 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T154 15414-15426 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T155 15414-15419 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T156 15420-15426 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T157 15488-15493 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T158 16232-16238 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T159 16294-16307 Body_part denotes alveolar wall http://purl.obolibrary.org/obo/UBERON_0004894
T160 16387-16393 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T161 16553-16559 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T162 16738-16744 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T163 16874-16878 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T164 16879-16885 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T165 16941-16954 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T166 16941-16946 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T167 16947-16954 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T168 17002-17014 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T169 17002-17007 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T170 17008-17014 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T171 17142-17151 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T172 17298-17310 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T173 17298-17303 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T174 17304-17310 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T175 17420-17429 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T176 17456-17465 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T177 17518-17527 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T178 17604-17616 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T179 17604-17609 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T180 17610-17616 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T181 17777-17783 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T182 17868-17880 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T183 17868-17873 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T184 17874-17880 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T185 17982-17994 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T186 17982-17987 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T187 17988-17994 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T188 18136-18148 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T189 18136-18141 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T190 18142-18148 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T191 18253-18262 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T192 18286-18298 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T193 18286-18291 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T194 18292-18298 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T195 18331-18340 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T196 18360-18369 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T197 18511-18523 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T198 18511-18516 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T199 18517-18523 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T200 18583-18589 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T201 18708-18720 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T202 18708-18713 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T203 18714-18720 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T204 18730-18735 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 4470-4504 Disease denotes lymphocytic interstitial pneumonia http://purl.obolibrary.org/obo/MONDO_0009537
T27 4495-4504 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 4733-4742 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T29 4836-4848 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T30 5473-5482 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T31 5947-5956 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T32 6081-6090 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T33 6343-6377 Disease denotes lymphocytic interstitial pneumonia http://purl.obolibrary.org/obo/MONDO_0009537
T34 6368-6377 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T35 6507-6516 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T36 6595-6604 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T37 7095-7129 Disease denotes lymphocytic interstitial pneumonia http://purl.obolibrary.org/obo/MONDO_0009537
T38 7120-7129 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T39 7514-7530 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T40 7679-7691 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T41 8188-8224 Disease denotes lymphocytic interstitial pneumonitis http://purl.obolibrary.org/obo/MONDO_0009537
T42 8213-8224 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T43 8240-8248 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T44 8365-8374 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T45 8379-8390 Disease denotes anthracosis http://purl.obolibrary.org/obo/MONDO_0006654
T46 8463-8475 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T47 8492-8510 Disease denotes chronic bronchitis http://purl.obolibrary.org/obo/MONDO_0005607
T48 8500-8510 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T49 8511-8524 Disease denotes bronchiolitis http://purl.obolibrary.org/obo/MONDO_0002465
T50 8943-8951 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T51 13192-13204 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T52 13428-13440 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T81 49-53 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T82 49-53 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T83 108-109 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T84 617-621 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T85 617-621 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T86 1150-1151 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1197-1198 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 1311-1312 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T89 1593-1599 http://purl.obolibrary.org/obo/CLO_0051456 denotes a). (e
T90 1684-1685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 1700-1701 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T92 1784-1785 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T93 1800-1801 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 3191-3192 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T95 4416-4425 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T96 4442-4452 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T97 4535-4550 http://purl.obolibrary.org/obo/UBERON_0002016 denotes pulmonary veins
T98 4561-4562 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 4641-4654 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T100 4641-4654 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T101 4680-4696 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cell
T102 4899-4900 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 4907-4913 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T104 4907-4913 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T105 4926-4938 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T106 4991-4998 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T107 5140-5152 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T108 5140-5152 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T109 5213-5230 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T110 5213-5230 http://www.ebi.ac.uk/efo/EFO_0000952 denotes connective tissue
T111 5260-5268 http://purl.obolibrary.org/obo/CHEBI_3815 denotes collagen
T112 5288-5294 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T113 5288-5294 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T114 5288-5294 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T115 5288-5294 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T116 5422-5435 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T117 5422-5435 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T118 5448-5449 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 5530-5543 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T120 5530-5543 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T121 5550-5555 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T122 5550-5555 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T123 5573-5580 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T124 5727-5728 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 5736-5742 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T126 5922-5923 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 6131-6132 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 6151-6152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 6160-6172 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T130 6160-6172 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T131 6198-6199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 6215-6216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 6217-6229 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T134 6217-6229 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T135 6234-6235 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 6486-6487 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 6558-6559 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 6617-6618 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 6631-6643 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T140 6631-6643 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T141 6759-6771 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T142 6759-6771 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T143 6921-6922 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 6944-6949 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T145 6958-6959 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 7154-7163 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T147 7324-7334 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T148 7335-7340 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T149 7505-7506 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 7712-7721 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T151 7833-7841 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T152 7859-7860 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T153 7861-7873 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T154 7861-7873 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T155 7905-7918 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T156 7905-7918 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T157 8010-8020 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T158 8037-8044 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T159 8048-8060 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T160 8229-8230 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 8252-8253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 8260-8264 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T163 8260-8264 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T164 8270-8282 http://purl.obolibrary.org/obo/UBERON_0005169 denotes interstitium
T165 8419-8425 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T166 8511-8524 http://purl.obolibrary.org/obo/UBERON_0002186 denotes bronchiolitis
T167 8941-8942 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 9158-9159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 9177-9181 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T170 9177-9181 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T171 9915-9916 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T172 9954-9955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 9962-9974 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T174 9962-9974 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T175 9996-9997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 10117-10123 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T177 10235-10239 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T178 10235-10239 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T179 10373-10374 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 10382-10383 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T181 10436-10437 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T182 10495-10496 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 10611-10616 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T184 10611-10616 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T185 10634-10635 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T186 10754-10761 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T187 10837-10838 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 10839-10845 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T189 11383-11385 http://purl.obolibrary.org/obo/CL_0000453 denotes Lc
T190 11554-11555 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T191 11615-11616 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 11711-11724 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T193 11711-11724 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T194 12388-12390 http://purl.obolibrary.org/obo/CLO_0052906 denotes cl
T195 12402-12406 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T196 12402-12406 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T197 12535-12538 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T198 12553-12554 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 12588-12601 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T200 12588-12601 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T201 12620-12629 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T202 12638-12639 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 12693-12697 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T204 12714-12715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T205 13036-13038 http://purl.obolibrary.org/obo/CL_0000453 denotes Lc
T206 13221-13225 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T207 13221-13225 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T208 13267-13270 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T209 13337-13338 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T210 13470-13479 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T211 13681-13683 http://purl.obolibrary.org/obo/CL_0000453 denotes Lc
T212 13809-13811 http://purl.obolibrary.org/obo/CLO_0052906 denotes cl
T213 13952-13954 http://purl.obolibrary.org/obo/CL_0000453 denotes Lc
T214 13972-13975 http://purl.obolibrary.org/obo/CLO_0052906 denotes c l
T215 14260-14268 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T216 14288-14289 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T217 14345-14346 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T218 14441-14449 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T219 14582-14591 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T220 14682-14695 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T221 14682-14695 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T222 14747-14748 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T223 14778-14787 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T224 14840-14848 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T225 14910-14911 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T226 14997-14998 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T227 15025-15026 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T228 15070-15078 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T229 15212-15213 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T230 15246-15247 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T231 15255-15256 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T232 15287-15288 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T233 15308-15314 http://purl.obolibrary.org/obo/CLO_0002755 denotes d). (f
T234 15406-15407 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T235 15414-15426 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T236 15414-15426 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T237 15478-15486 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T238 15541-15549 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T239 15615-15616 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T240 15677-15678 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T241 15789-15793 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T242 15868-15872 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T243 15888-15889 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T244 15902-15903 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T245 15935-15939 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T246 15960-15961 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T247 15993-15997 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T248 16013-16014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T249 16054-16058 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T250 16102-16106 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T251 16136-16141 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T252 16198-16199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T253 16321-16329 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T254 16428-16429 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T255 16465-16468 http://purl.obolibrary.org/obo/CLO_0051456 denotes a–e
T256 16475-16476 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T257 16590-16591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T258 16639-16647 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T259 16701-16702 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T260 16782-16790 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T261 16851-16855 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T262 16874-16878 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T263 16874-16878 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T264 16941-16954 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T265 16941-16954 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T266 16990-16991 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T267 17002-17014 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T268 17002-17014 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T269 17133-17134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T270 17153-17154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T271 17280-17281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T272 17298-17310 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T273 17298-17310 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T274 17490-17495 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T275 17547-17550 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T276 17551-17552 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T277 17604-17616 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T278 17604-17616 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T279 17777-17783 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T280 17868-17880 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T281 17868-17880 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T282 17982-17994 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T283 17982-17994 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T284 18136-18148 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T285 18136-18148 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T286 18187-18188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T287 18251-18252 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T288 18284-18285 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T289 18286-18298 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T290 18286-18298 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T291 18394-18406 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T292 18409-18410 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T293 18482-18483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T294 18511-18523 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T295 18511-18523 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T296 18583-18589 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T297 18708-18720 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T298 18708-18720 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T13 4395-4404 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T14 4836-4848 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T15 7679-7691 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T16 8329-8339 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T17 8463-8475 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T18 9037-9049 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T19 10512-10524 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T20 11052-11064 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T21 13192-13204 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T22 13428-13440 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T23 13449-13458 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T24 14450-14459 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T25 15550-15559 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T26 15794-15806 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T27 16925-16937 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T28 17053-17065 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T29 17584-17596 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T30 17923-17935 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T31 17962-17974 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T32 18090-18103 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentations
T33 18116-18128 http://purl.obolibrary.org/obo/GO_0035282 denotes Segmentation
T34 18491-18503 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T35 18658-18670 http://purl.obolibrary.org/obo/GO_0035282 denotes Segmentation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T49 0-7 Sentence denotes Results
T50 8-107 Sentence denotes In total, we investigated six postmortem lung samples from Covid-19 patients (Menter et al., 2020).
T51 108-230 Sentence denotes A tissue micro-array paraffin block with samples of all six patients and the corresponding HE stain is shown in Figure 1a.
T52 231-372 Sentence denotes Information about age, gender, hospitalization, clinical, radiological and histological characteristics of all patients are shown in Table 2.
T53 373-561 Sentence denotes Before presenting the results for the six Covid-19 patients for each of the imaging levels (scales), we give an overview on the typical datasets for one exemplary sample (I), see Figure 2.
T54 562-773 Sentence denotes The typical FOVs, image quality, and appearance of the lung structure as well as the amount of data can be inferred, and inspected in the reconstructions provided online (https://doi.org/10.5281/zenodo.3892637).
T55 774-829 Sentence denotes The datasets are denoted by patient I-VI, respectively.
T56 830-1086 Sentence denotes Gray values of the tomographic reconstruction represent phase shift per voxel with edge length v⁢x, the local electron density difference to the average paraffin can be computed by(1) Δρe(r)=φvx(r)vx⋅λ⋅r0,with wavelength λ and r0 classical electron radius.
T57 1087-1096 Sentence denotes Figure 2.
T58 1098-1195 Sentence denotes Overview of reconstruction volumes, exemplified for a punch biopsy of pulmonary autopsy sample I.
T59 1196-1670 Sentence denotes (a) Virtual section through the stitched reconstruction volume with indicated position for the 1 mm biopsy punch. (b) Virtual section through the reconstruction of the 1 mm biopsy punch volume with indicated position for the cone-beam dataset. (c) Virtual section through the cone beam dataset. (d) Image of an HE-stained histological section, which is in close proximity to the virtual slice in (a). (e) 3D views of the biopsy punch. (f) 3D views of the cone-beam datasets.
T60 1671-1773 Sentence denotes Scale bars: (a) 500⁢μ⁢m and (b,c) 100⁢μ⁢m. The entire reconstruction volume is visualized in Video 1. 
T61 1774-1782 Sentence denotes Video 1.
T62 1784-1852 Sentence denotes A video showing a fly-through the reconstruction volume of sample I.
T63 1853-1942 Sentence denotes First the parallel beam data set is shown, followed by the cone beam zoom reconstruction.
T64 1944-1974 Sentence denotes Reconstructed electron density
T65 1975-2091 Sentence denotes Next, we present representative slices through the reconstruction volumes of all samples for all acquisition scales.
T66 2092-2206 Sentence denotes Figure 3 presents the stitched reconstruction volumes, recorded under conditions of local tomography, see Table 3.
T67 2207-2578 Sentence denotes Conventional HE-stained histology images of all samples are shown in Appendix 1—figure 1. Since these volumes are computed from stitching up to 20 individual tomograms, the question arises to which extend the image quality is limited by potential artifacts of local tomography, that is, errors due to the fact that part of the sample is outside the reconstruction volume.
T68 2579-2768 Sentence denotes For this reason, 1 mm punches were taken after the stitched overview and rescanned in the parallel beam configuration, without local tomography conditions, since they fitted within the FOV.
T69 2769-2852 Sentence denotes The results are presented in Figure 4, and validate the previous stitching results.
T70 2853-2967 Sentence denotes The 1 mm punches then also provided an appropriate size for the cone-beam recordings, which are shown in Figure 5.
T71 2968-3090 Sentence denotes Importantly, in each scan the previous level guided the choice for the next FOV and informed about the larger environment.
T72 3091-3190 Sentence denotes In the following, we briefly discuss the samples one-by-one, with regard to all acquisition scales.
T73 3191-3300 Sentence denotes A comparison of morphological features between conventional and virtual histology is shown in the Appendix 1.
T74 3301-3310 Sentence denotes Figure 3.
T75 3312-3385 Sentence denotes Stitched parallel-beam reconstructions for full pulmonary samples (I–VI).
T76 3386-3491 Sentence denotes Representative virtual sections through the reconstruction volumes of full biopsies (I–VI), respectively.
T77 3492-3503 Sentence denotes Scale bars:
T78 3504-3512 Sentence denotes 500⁢μ⁢m.
T79 3513-3522 Sentence denotes Figure 4.
T80 3524-3585 Sentence denotes Parallel-beam reconstructions for 1 mm biopsy punches (I–VI).
T81 3586-3732 Sentence denotes Representative virtual sections through the reconstruction volumes of the 1 mm punches into the volumes of the full biopsies (I–VI), respectively.
T82 3733-3867 Sentence denotes The fact that the punches are isolated results in higher image quality, since the errors associated with local tomography are avoided.
T83 3868-3879 Sentence denotes Scale bars:
T84 3880-3888 Sentence denotes 100⁢μ⁢m.
T85 3889-3898 Sentence denotes Figure 5.
T86 3900-4045 Sentence denotes Cone-beam reconstructions for biopsy punches (I–VI), shown for approximately the same slices as in Figure 4 for the parallel beam reconstruction.
T87 4046-4245 Sentence denotes Virtual sections through the reconstruction volumes of the cone-beam recordings corresponding to sections in Figure 4, obtained by the parallel beam configuration, for biopsies (I–VI) , respectively.
T88 4246-4257 Sentence denotes Scale bars:
T89 4258-4266 Sentence denotes 100⁢μ⁢m.
T90 4268-4276 Sentence denotes Sample I
T91 4277-4551 Sentence denotes By conventional histopathological assessment, the peribronchial alveolar parenchyma of sample I showed DAD with focal formation of hyaline membranes adjacent to the epithelial lining, moderate lymphocytic interstitial pneumonia and singular thrombi in small pulmonary veins.
T92 4552-4773 Sentence denotes There is a moderate hypertrophy of the muscular media in smaller pre- and post-capillary blood vessels with desquamation of the endothelial cell layer as well as mild centrilobular emphysema (original magnification 100×).
T93 4774-4863 Sentence denotes In PC-CT, enlarged alveolar septa with pronounced lymphocytic inflammation are displayed.
T94 4864-4999 Sentence denotes The reconstruction volume contains a large artery filled with erythrocytes (Figure 3-I, lower left), which bifurcates into two vessels.
T95 5000-5065 Sentence denotes This area was then selected for the 1 mm biopsy punch extraction.
T96 5066-5153 Sentence denotes The cone-beam zoom tomogram was then centered around the perimeter of the blood vessel.
T97 5154-5295 Sentence denotes This volume is particularly well suited to investigate the connective tissue including elastic fibers and collagen, as well as smooth muscle.
T98 5297-5306 Sentence denotes Sample II
T99 5307-5513 Sentence denotes Histomorphological analysis shows peribronchial alveolar parenchyma with hyperemia of capillary and post-capillary blood vessels, as well as a moderate centrilobular emphysema (original magnification 100×).
T100 5514-5597 Sentence denotes On the level of blood vessels, both blood-filled and empty vessels are discernible.
T101 5598-5675 Sentence denotes It should be noted that septa with signs of parallel capillaries are visible.
T102 5676-5786 Sentence denotes In the reconstruction volume of the zoom tomogram, a single vessel can be easily tracked over large distances.
T103 5788-5798 Sentence denotes Sample III
T104 5799-5987 Sentence denotes The sample consists of peribronchial alveolar parenchyma showing prominent multifocal neutrophilic capillaritis as well as a moderate centrilobular emphysema (original magnification 100×).
T105 5988-6091 Sentence denotes In PC-CT, septa with again similar physiological size and distribution emerge, with moderate emphysema.
T106 6092-6173 Sentence denotes The bottom part of the sample contains a fibrous area near a larger blood vessel.
T107 6174-6251 Sentence denotes The zoom tomogram shows a single septum, a blood vessel and a fibrous region.
T108 6253-6262 Sentence denotes Sample IV
T109 6263-6463 Sentence denotes Histomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD.
T110 6464-6547 Sentence denotes Furthermore, there is a mild centrilobular emphysema (original magnification 100×).
T111 6548-6652 Sentence denotes In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears.
T112 6653-6707 Sentence denotes Electron-rich diffuse black granules are also visible.
T113 6708-6792 Sentence denotes The biopsy punch was selected to contain the empty blood vessel, some small thrombi.
T114 6793-6856 Sentence denotes It also includes thin septa and tissue embedded dirt-particles.
T115 6857-6972 Sentence denotes The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall.
T116 6974-6982 Sentence denotes Sample V
T117 6983-7287 Sentence denotes By conventional histological assessment, Sample V consists of peribronchial alveolar parenchyma showing massive lymphocytic interstitial pneumonia with ubiquitous hyaline membranes superimposed on the alveolar walls, neutrophilic capillaritis and multifocal post-capillary thrombi in terms of severe DAD.
T118 7288-7423 Sentence denotes Furthermore, bronchialized alveolar epithelial cells show cytopathic changes and multifocal desquamation, as does alveolar macrophages.
T119 7424-7577 Sentence denotes Focally, accumulation of intraalveolar neutrophilic granulocytes in the sense of a florid bronchopneumonia can be observed (original magnification 100×).
T120 7578-7752 Sentence denotes PC-CT data give rise to alterations of the overall morphology due to Covid-19, including substantial inflammation, pronounced hyaline membranes, and high load of lymphocytes.
T121 7753-7858 Sentence denotes The biopsy punch was chosen to include areas with increased presence of hyaline membrane and lymphocytes.
T122 7859-7987 Sentence denotes A blood vessel splitting into several smaller blood vessels is easily recognized when browsing through the reconstructed volume.
T123 7988-8103 Sentence denotes Noteworthy, different cell types as macrophages, T-cells or erythrocytes can be distinguished in the zoom tomogram.
T124 8105-8114 Sentence denotes Sample VI
T125 8115-8265 Sentence denotes Histomorphological analysis shows peribronchial alveolar parenchyma with lymphocytic interstitial pneumonitis and a singular thrombus in a small vein.
T126 8266-8340 Sentence denotes The interstitium of the alveolar septae is widened by myogenic metaplasia.
T127 8341-8404 Sentence denotes Adjacent, centrilobular emphysema and anthracosis are observed.
T128 8405-8555 Sentence denotes The bronchial mucosa shows varying degrees of lymphocytic inflammation in the sense of chronic bronchitis/bronchiolitis (original magnification 100×).
T129 8556-8710 Sentence denotes From PC-CT reconstructions, the sample consists of thin alveoli (Figure 3VI, upper left) evolving into compact, fibrotic tissue (Figure 3VI, lower right).
T130 8711-8766 Sentence denotes The amount of lymphocytes is rather low in this sample.
T131 8767-8842 Sentence denotes Black granules and some thrombi are embedded within the bulky tissue parts.
T132 8843-9005 Sentence denotes The biopsy punch covers the region of transition from alveoli to fibrotic tissue, containing also a thrombus and capillaries as identified from the zoom tomogram.
T133 9007-9069 Sentence denotes Visualization of pathologies, segmentation, and quantification
T134 9070-9235 Sentence denotes The overview scans of all paraffin embedded Covid-19 positive samples and one biopsy of a hydrated control lung were analyzed in terms of structural characteristics.
T135 9236-9347 Sentence denotes The top row of Figure 6 shows the workflow of the analysis on the example of the 3D reconstruction of sample V.
T136 9348-9461 Sentence denotes Based on the tissue mask the distances for each tissue voxel to the next voxel containing oxygen were determined.
T137 9462-9629 Sentence denotes For the analysis of the tissue it is mandatory to consider the three-dimensionality of the samples, similar to the analysis of porous structures (Müller et al., 2002).
T138 9630-9860 Sentence denotes More generally, we claim that 3D histology analysis based on x-ray tomography and light sheet microscopy (Power and Huisken, 2017) is required to quantitatively understand functional tissue properties based on its 3D architecture.
T139 9861-10009 Sentence denotes Here, this can also be seen in Figure 6d, which shows a zoom of the distance analysis around a small blood vessel which is marked with a yellow box.
T140 10010-10152 Sentence denotes While the wall thickness appears quite homogeneous in the 2d slice, the distance analysis reveals that the vessel is thicker on the top right.
T141 10153-10162 Sentence denotes Figure 6.
T142 10164-10204 Sentence denotes Tissue compactness and distance metrics:
T143 10205-10317 Sentence denotes The 3D reconstructions of the lung tissue were analyzed in terms of specific surface and characteristic lengths.
T144 10318-10378 Sentence denotes The workflow is sketched for sample V in the top part (a–g).
T145 10379-10435 Sentence denotes In a first step, the tissue was segmented using Ilastik.
T146 10436-10498 Sentence denotes A slice of the reconstructed electron density is shown in (a).
T147 10499-10735 Sentence denotes Based on the segmentation, the areas of air which are directly connected and potentially filled with oxygen (or blood) are masked out (b). (c) For each of the remaining tissue voxels the shortest possible distance to air was calculated.
T148 10736-10846 Sentence denotes Especially around vessels and larger alveoli, the distances are larger. (d) Zoom into an area around a vessel.
T149 10847-11165 Sentence denotes Further analysis is based on the distance distribution shown in (e). (f) Volume rendering of the reconstructed electron density, with (g) showing the corresponding 3D distance map. (h) Based on the tissue segmentation of all samples, the distance from the tissue interior to the closest air compartment was calculated.
T150 11166-11279 Sentence denotes In order to compare all samples, the count of voxels was normalized by the total volume of the respective sample.
T151 11280-11463 Sentence denotes The specific surface area SV (represented by the first value of each curve), the characteristic length Lc and the mean distance dO2¯ for each sample was calculated based on this data.
T152 11464-11533 Sentence denotes Double logarithmic scale, bin width of the distribution of distances:
T153 11534-11540 Sentence denotes 1 v⁢x.
T154 11541-11567 Sentence denotes Scale bars: (a–c) 100⁢μ⁢m.
T155 11568-11651 Sentence denotes The distribution of the distances obtained for a given slice is shown in Figure 6e.
T156 11652-11837 Sentence denotes The swelling of the alveolar walls as well as the inflamed blood vessels can be identified by comparing the reconstructed electron density and the 3D-distance map (see Figure 6f and g).
T157 11838-11976 Sentence denotes Figure 6h shows the distribution of the tissue-air distances (histogram) for all samples, following the workflow illustrated in Figure 6e.
T158 11977-12030 Sentence denotes The binning of distances was set to one voxel length.
T159 12031-12144 Sentence denotes The figure underlines the high diversity of the tissue structure which could already be seen in the 3D histology.
T160 12145-12252 Sentence denotes Further, it directly informs about the specific surface SV, which is given by the first point of the graph.
T161 12253-12335 Sentence denotes The corresponding parameters and metrics are tabulated in Table 1 for all samples.
T162 12336-12440 Sentence denotes Additionally, the mean concentration of lymphocytes cl within the lung tissue is listed for all samples.
T163 12441-12539 Sentence denotes The values quantify the general structure of the tissue which is qualitatively discernible by eye.
T164 12540-12669 Sentence denotes Samples with a high amount of swollen, inflamed blood vessels and thick hyaline membranes exhibit a larger characteristic length.
T165 12670-12807 Sentence denotes Note, that the control lung was prepared in a hydrated environment and shrinking due to further preparation of the sample does not occur.
T166 12808-12888 Sentence denotes Hence, the results cannot be directly compared to the paraffin embedded samples.
T167 12889-13017 Sentence denotes Further, the analysis of the lymphocyte concentration was performed since no lymphocytes were found in the reconstructed volume.
T168 13018-13131 Sentence denotes The low values of Lc and dO2¯ for sample II correlate with the lack of ground-glass opacification in clinical CT.
T169 13132-13250 Sentence denotes Based on the extracted structural parameters, the degree of inflammation and swelling of lung tissue can be evaluated.
T170 13251-13371 Sentence denotes E.g. patient II has the highest surface area volume-ratios while sample I and VI have a relatively low specific surface.
T171 13372-13571 Sentence denotes Larger characteristic lengths may also be indicative of inflammation and the formation of hyaline membranes, which will be evaluated in the following based on ROI and high-resolution reconstructions.
T172 13572-13580 Sentence denotes Table 1.
T173 13582-13930 Sentence denotes Results of the analysis of tissue characteristics: specific surface area SV, characteristic length Lc and mean distance dO2¯ and standard deviation from all tissue voxels to air as well as the mean concentration of lymphocytes cl for all six Covid-19 positive samples as well as for one control sample. Colors match the distance graphs in Figure 6.
T174 13931-13942 Sentence denotes Patient no.
T175 13944-14000 Sentence denotes SV (%) Lc (μm) dO2¯ (μm) c l   ( 10 5 / m m 3 )
T176 14001-14029 Sentence denotes I 13.87 9.4 5.9±5.3 16.0
T177 14030-14059 Sentence denotes II 46.56 2.8 2.1±1.0 14.1
T178 14060-14089 Sentence denotes III 33.75 3.9 2.5±1.5 4.4
T179 14090-14118 Sentence denotes IV 25.90 5.0 3.2±2.3 7.1
T180 14119-14146 Sentence denotes V 19.28 6.7 3.6±2.1 4.8
T181 14147-14175 Sentence denotes VI 11.87 11.0 9.1±10 6.1
T182 14176-14305 Sentence denotes CTRL (hyd.) 20.04 6.5 5.0±5.1 - Figure 7 illustrates the aggregation of hyaline membrane in the vicinity of a single alveole.
T183 14306-14413 Sentence denotes Volumetric renderings in Figure 7a and b demonstrate particular attachment of fibrin to the alveolar walls.
T184 14414-14559 Sentence denotes In cases of severe hyaline membrane formation as for this patient, this pathological alteration can be tracked throughout the volume Figure 7c–e.
T185 14560-14630 Sentence denotes In Figure 7f, hyaline membranes of neighboring alveoles are indicated.
T186 14631-14807 Sentence denotes In the 3D-context, their locations with respect to blood vessels can be inspected, see Figure 7g, which exemplifies a direct connection of hyaline membranes to the vasculature.
T187 14808-14817 Sentence denotes Figure 7.
T188 14819-14924 Sentence denotes Rendering of hyaline membrane attached to alveolar walls (patient V, parallel beam-scan of a 1 mm punch).
T189 14925-15207 Sentence denotes The rendered subvolume was restricted to 1.15×1.10×0.56 mm3, to contain a single alveole foremost. (a) Volume rendering of the segmented hyaline membrane in same spatial orientation as (c)-(e), which show virtual slices through the (c) top, (d) center and (e) bottom of the alveole.
T190 15208-15487 Sentence denotes For a better spatial classification, (b) gives a combination of the volume in (a) and the slice in (d). (f) Volume rendering of the entire subvolume including neighboring alveolae. (g) Zoom-in onto a major blood vessel (red) which is directly connected with the hyaline membrane.
T191 15488-15514 Sentence denotes Scale bars: (c–e) 300⁢μ⁢m.
T192 15515-15722 Sentence denotes The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions.
T193 15723-15835 Sentence denotes Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods).
T194 15836-15964 Sentence denotes For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d.
T195 15965-16161 Sentence denotes Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e.
T196 16162-16269 Sentence denotes This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g.
T197 16270-16279 Sentence denotes Figure 8.
T198 16281-16442 Sentence denotes Rendering of alveolar wall with hyaline membrane and quantification of lymphocyte infiltration (unstained tissue, patient I, parallel beam scan of a 1 mm punch).
T199 16443-16670 Sentence denotes The illustrations in (a–e) show a subvolume of 0.60×0.48×0.26 mm3, (f and g) this concept applied to the full tissue block of 2.57×2.99×0.98 mm3. (a) Yellow contours mark the locations of hyaline membrane in an exemplary slice.
T200 16671-16914 Sentence denotes In same spatial orientation, (b, d and f) volume rendering of soft tissue (light pink), infiltrated by hyaline membrane (yellow) and lymphocytes (red) and (c, e and g) their local cell density among the lung tissue, including air compartments.
T201 16915-17048 Sentence denotes Next, the segmentation of blood vessels is demonstrated for the example of a splitting blood vessel in the zoom tomogram of sample V.
T202 17049-17089 Sentence denotes The segmentation was performed manually.
T203 17090-17236 Sentence denotes To give an impression of the separation of a single capillary, a series of virtual slices in the xy-plane (magnified views) is shown in Figure 9a.
T204 17237-17332 Sentence denotes The separation starts with the creation of a branch from the blood vessel (arrow in slice 336).
T205 17333-17430 Sentence denotes In slice 326, 1.7⁢μ⁢m above slice 336, this branch evolves into an empty and separated capillary.
T206 17431-17496 Sentence denotes Another 2⁢μ⁢m above, the capillary is entirely filled with cells.
T207 17497-17579 Sentence denotes Further 2.3⁢μ⁢m, the capillary is empty again and has a diameter of about 2.8⁢μ⁢m.
T208 17580-17706 Sentence denotes The segmentation of the blood vessel with all its separated branches is indicated for slice 336 in Figure 9b by the red lines.
T209 17707-17847 Sentence denotes In this slice, three capillaries have already separated from the main vessel, while the fourth starts to emerge, indicated by the red arrow.
T210 17848-17956 Sentence denotes The 3D shape of the blood vessel is illustrated by the 3D rendering of the segmentation, shown in Figure 9c.
T211 17957-18104 Sentence denotes This segmentation of the blood vessel shows the potential of the datasets, which may be fully exploited in future with more advanced segmentations.
T212 18105-18114 Sentence denotes Figure 9.
T213 18116-18185 Sentence denotes Segmentation of the blood vessel network, exemplified for biopsy (V).
T214 18186-18299 Sentence denotes (a) Series of slices in z-direction illustrate the separation of a capillary (≈5μm diameter) from a blood vessel.
T215 18300-18341 Sentence denotes Red arrow marks the separating capillary.
T216 18342-18532 Sentence denotes In slice 314, the capillary is entirely filled with erythrocytes. (b) Red lines in the entire virtual slice (336) represent the contours of a manual segmentation of the blood vessel network.
T217 18533-18729 Sentence denotes Three capillaries already separated from the main vessel, while the fourth starts to emerge, indicated by the red arrow. (c) Segmentation illustrating the 3D structure of the blood vessel network.
T218 18730-18741 Sentence denotes Scale bars:
T219 18742-18749 Sentence denotes 50⁢μ⁢m.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 4498-4507 Phenotype denotes umonia an http://purl.obolibrary.org/obo/HP_0002090
T16 4663-4675 Phenotype denotes quamation of http://purl.obolibrary.org/obo/HP_0040189
T17 4722-4745 Phenotype denotes trilobular emphysema (o http://purl.obolibrary.org/obo/HP_0032966
T18 5462-5485 Phenotype denotes trilobular emphysema (o http://purl.obolibrary.org/obo/HP_0032966
T19 5936-5959 Phenotype denotes trilobular emphysema (o http://purl.obolibrary.org/obo/HP_0032966
T20 6371-6380 Phenotype denotes umonia, m http://purl.obolibrary.org/obo/HP_0002090
T21 6496-6519 Phenotype denotes trilobular emphysema (o http://purl.obolibrary.org/obo/HP_0032966
T22 6598-6607 Phenotype denotes hysema, a http://purl.obolibrary.org/obo/HP_0002097
T23 7123-7132 Phenotype denotes umonia wi http://purl.obolibrary.org/obo/HP_0002090
T24 7383-7395 Phenotype denotes quamation, a http://purl.obolibrary.org/obo/HP_0040189
T25 8203-8227 Phenotype denotes erstitial pneumonitis an http://purl.obolibrary.org/obo/HP_0006515
T26 8354-8377 Phenotype denotes trilobular emphysema an http://purl.obolibrary.org/obo/HP_0032966
T27 8495-8513 Phenotype denotes onic bronchitis/br http://purl.obolibrary.org/obo/HP_0004469
T28 8514-8527 Phenotype denotes nchiolitis (o http://purl.obolibrary.org/obo/HP_0011950

2_test

Id Subject Object Predicate Lexical cue
32815517-32364264-26997860 101-105 32364264 denotes 2020
32815517-12202165-26997861 9623-9627 12202165 denotes 2002
32815517-28362435-26997862 9755-9759 28362435 denotes 2017
32815517-29915047-26997863 16102-16106 29915047 denotes 2018

MyTest

Id Subject Object Predicate Lexical cue
32815517-32364264-26997860 101-105 32364264 denotes 2020
32815517-12202165-26997861 9623-9627 12202165 denotes 2002
32815517-28362435-26997862 9755-9759 28362435 denotes 2017
32815517-29915047-26997863 16102-16106 29915047 denotes 2018

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
135 76-84 Species denotes patients Tax:9606
136 168-176 Species denotes patients Tax:9606
137 342-350 Species denotes patients Tax:9606
138 424-432 Species denotes patients Tax:9606
139 802-809 Species denotes patient Tax:9606
140 199-201 Chemical denotes HE
141 983-991 Chemical denotes paraffin MESH:D010232
142 67-75 Disease denotes Covid-19 MESH:C000657245
143 415-423 Disease denotes Covid-19 MESH:C000657245
145 1507-1509 Chemical denotes HE
147 2220-2222 Chemical denotes HE
153 4470-4504 Disease denotes lymphocytic interstitial pneumonia MESH:D009395
154 4572-4583 Disease denotes hypertrophy MESH:D006984
155 4733-4742 Disease denotes emphysema MESH:D004646
156 4824-4848 Disease denotes lymphocytic inflammation MESH:D007249
157 4777-4782 CellLine denotes PC-CT CVCL:B848
160 5380-5389 Disease denotes hyperemia MESH:D006940
161 5473-5482 Disease denotes emphysema MESH:D004646
166 5885-5910 Disease denotes neutrophilic capillaritis MESH:C564275
167 5947-5956 Disease denotes emphysema MESH:D004646
168 6081-6090 Disease denotes emphysema MESH:D004646
169 5991-5996 CellLine denotes PC-CT CVCL:B848
175 6343-6377 Disease denotes lymphocytic interstitial pneumonia MESH:D009395
176 6379-6404 Disease denotes multifocal venous thrombi
177 6507-6516 Disease denotes emphysema MESH:D004646
178 6583-6604 Disease denotes thrombi and emphysema MESH:D004646
179 6551-6556 CellLine denotes PC-CT CVCL:B848
186 7095-7129 Disease denotes lymphocytic interstitial pneumonia MESH:D009395
187 7200-7225 Disease denotes neutrophilic capillaritis MESH:C564275
188 7514-7530 Disease denotes bronchopneumonia MESH:D001996
189 7647-7655 Disease denotes Covid-19 MESH:C000657245
190 7679-7691 Disease denotes inflammation MESH:D007249
191 7578-7583 CellLine denotes PC-CT CVCL:B848
199 8188-8224 Disease denotes lymphocytic interstitial pneumonitis MESH:D017563
200 8240-8248 Disease denotes thrombus MESH:D013927
201 8365-8374 Disease denotes emphysema MESH:D004646
202 8451-8475 Disease denotes lymphocytic inflammation MESH:D007249
203 8500-8524 Disease denotes bronchitis/bronchiolitis MESH:D001991
204 8943-8951 Disease denotes thrombus MESH:D013927
205 8561-8566 CellLine denotes PC-CT CVCL:B848
209 9096-9104 Chemical denotes paraffin MESH:D010232
210 9438-9444 Chemical denotes oxygen MESH:D010100
211 9114-9122 Disease denotes Covid-19 MESH:C000657245
213 10600-10606 Chemical denotes oxygen MESH:D010100
220 13256-13263 Species denotes patient Tax:9606
221 12862-12870 Chemical denotes paraffin MESH:D010232
222 11656-11664 Disease denotes swelling MESH:D004487
223 13192-13204 Disease denotes inflammation MESH:D007249
224 13209-13217 Disease denotes swelling MESH:D004487
225 13428-13440 Disease denotes inflammation MESH:D007249
229 13952-13959 Gene denotes Lc (μm) Gene:56925
230 13967-13969 Gene denotes μm Gene:56925
231 13931-13938 Species denotes Patient Tax:9606
233 13824-13832 Disease denotes Covid-19 MESH:C000657245
235 14472-14479 Species denotes patient Tax:9606
237 14877-14884 Species denotes patient Tax:9606
239 15062-15078 Chemical denotes hyaline membrane
241 15664-15671 Species denotes patient Tax:9606
243 16395-16402 Species denotes patient Tax:9606