PMC:7473770 / 47055-48128
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T286 | 129-137 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
| T287 | 156-164 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
| T288 | 302-314 | Body_part | denotes | Artery lumen | http://purl.org/sig/ont/fma/fma14163 |
| T289 | 302-308 | Body_part | denotes | Artery | http://purl.org/sig/ont/fma/fma50720 |
| T290 | 316-327 | Body_part | denotes | artery wall | http://purl.org/sig/ont/fma/fma14155 |
| T291 | 316-322 | Body_part | denotes | artery | http://purl.org/sig/ont/fma/fma50720 |
| T292 | 329-341 | Body_part | denotes | erythrocytes | http://purl.org/sig/ont/fma/fma62845 |
| T293 | 353-361 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T294 | 445-453 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
| T295 | 603-615 | Body_part | denotes | Erythrocytes | http://purl.org/sig/ont/fma/fma62845 |
| T296 | 641-644 | Body_part | denotes | eye | http://purl.org/sig/ont/fma/fma54448 |
| T297 | 821-826 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T298 | 875-892 | Body_part | denotes | blood capillaries | http://purl.org/sig/ont/fma/fma63194 |
| T299 | 875-880 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T300 | 900-908 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T301 | 1053-1061 | Body_part | denotes | Appendix | http://purl.org/sig/ont/fma/fma14542 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T259 | 25-47 | Body_part | denotes | morphological features | http://purl.obolibrary.org/obo/UBERON_0034768 |
| T260 | 302-308 | Body_part | denotes | Artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
| T261 | 316-327 | Body_part | denotes | artery wall | http://purl.obolibrary.org/obo/UBERON_0000415 |
| T262 | 316-322 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
| T263 | 362-368 | Body_part | denotes | septum | http://purl.obolibrary.org/obo/UBERON_0003037 |
| T264 | 641-644 | Body_part | denotes | eye | http://purl.obolibrary.org/obo/UBERON_0000970 |
| T265 | 821-826 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T266 | 875-880 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T267 | 909-915 | Body_part | denotes | septum | http://purl.obolibrary.org/obo/UBERON_0003037 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T59 | 343-351 | Disease | denotes | thrombus | http://purl.obolibrary.org/obo/MONDO_0000831 |
| T60 | 419-430 | Disease | denotes | anthracosis | http://purl.obolibrary.org/obo/MONDO_0006654 |
| T61 | 808-816 | Disease | denotes | thrombus | http://purl.obolibrary.org/obo/MONDO_0000831 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T421 | 185-186 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T422 | 302-308 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | Artery |
| T423 | 302-308 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | Artery |
| T424 | 316-322 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
| T425 | 316-322 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
| T426 | 329-341 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | erythrocytes |
| T427 | 390-398 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T428 | 515-523 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T429 | 603-615 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | Erythrocytes |
| T430 | 641-644 | http://www.ebi.ac.uk/efo/EFO_0000827 | denotes | eye |
| T431 | 772-773 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T432 | 821-826 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T433 | 821-826 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T434 | 845-846 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T435 | 875-880 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T436 | 875-880 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T53 | 589-601 | http://purl.obolibrary.org/obo/GO_0035282 | denotes | segmentation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T388 | 0-224 | Sentence | denotes | An overview of different morphological features identified by conventional HE histology and virtual 3D histology is presented in Appendix 1—figure 2, while Appendix 1—figure 3 presents a direct comparison for the same slice. |
| T389 | 225-301 | Sentence | denotes | For this purpose, the sample was sectioned and stained after the PC-CT scan. |
| T390 | 302-490 | Sentence | denotes | Artery lumen, artery wall, erythrocytes, thrombus, alveolar septum, marcophage, hyaline membrane and black granules (anthracosis) are shown in Appendix 1—figure 2 for both imaging methods. |
| T391 | 491-602 | Sentence | denotes | Contrast of the hyaline membrane is homogenous in both modalities, facilitating idetification and segmentation. |
| T392 | 603-755 | Sentence | denotes | Erythrocytes are easily recognized by eye in the conventional histology image, due to the HE staining, but less well distinguished by virtual histology. |
| T393 | 756-916 | Sentence | denotes | This results in a difficult differentiation between thrombus and blood stasis as well as a difficult identification of blood capillaries in the alveolar septum. |
| T394 | 917-1073 | Sentence | denotes | Importantly, however, feature identification can be confirmed by correlative 2d and 3D histology on the same section, as exemplified by Appendix 1—figure 3. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 396 | 693-695 | Chemical | denotes | HE | |
| 397 | 343-351 | Disease | denotes | thrombus | MESH:D013927 |
| 398 | 808-816 | Disease | denotes | thrombus | MESH:D013927 |
| 399 | 290-295 | CellLine | denotes | PC-CT | CVCL:B848 |