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PMC:7473770 / 46418-48983 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T282 0-8 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T283 93-99 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T284 221-229 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T285 394-402 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T286 766-774 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T287 793-801 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T288 939-951 Body_part denotes Artery lumen http://purl.org/sig/ont/fma/fma14163
T289 939-945 Body_part denotes Artery http://purl.org/sig/ont/fma/fma50720
T290 953-964 Body_part denotes artery wall http://purl.org/sig/ont/fma/fma14155
T291 953-959 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T292 966-978 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T293 990-998 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T294 1082-1090 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T295 1240-1252 Body_part denotes Erythrocytes http://purl.org/sig/ont/fma/fma62845
T296 1278-1281 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T297 1458-1463 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T298 1512-1529 Body_part denotes blood capillaries http://purl.org/sig/ont/fma/fma63194
T299 1512-1517 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T300 1537-1545 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T301 1690-1698 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T302 1711-1719 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T303 1827-1839 Body_part denotes Artery lumen http://purl.org/sig/ont/fma/fma14163
T304 1827-1833 Body_part denotes Artery http://purl.org/sig/ont/fma/fma50720
T305 1841-1852 Body_part denotes artery wall http://purl.org/sig/ont/fma/fma14155
T306 1841-1847 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T307 1854-1866 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T308 1878-1886 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T309 1895-1905 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T310 2133-2141 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T311 2374-2386 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T257 93-99 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T258 616-621 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T259 662-684 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T260 939-945 Body_part denotes Artery http://purl.obolibrary.org/obo/UBERON_0001637
T261 953-964 Body_part denotes artery wall http://purl.obolibrary.org/obo/UBERON_0000415
T262 953-959 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T263 999-1005 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0003037
T264 1278-1281 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T265 1458-1463 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T266 1512-1517 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T267 1546-1552 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0003037
T268 1747-1769 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T269 1827-1833 Body_part denotes Artery http://purl.obolibrary.org/obo/UBERON_0001637
T270 1841-1852 Body_part denotes artery wall http://purl.obolibrary.org/obo/UBERON_0000415
T271 1841-1847 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T272 1887-1893 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0003037
T273 2092-2097 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T274 2546-2551 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T59 980-988 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T60 1056-1067 Disease denotes anthracosis http://purl.obolibrary.org/obo/MONDO_0006654
T61 1445-1453 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T62 1868-1876 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T420 207-208 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T421 822-823 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T422 939-945 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Artery
T423 939-945 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Artery
T424 953-959 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T425 953-959 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T426 966-978 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T427 1027-1035 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T428 1152-1160 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T429 1240-1252 http://purl.obolibrary.org/obo/CL_0000232 denotes Erythrocytes
T430 1278-1281 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T431 1409-1410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T432 1458-1463 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T433 1458-1463 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T434 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T435 1512-1517 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T436 1512-1517 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T437 1827-1833 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Artery
T438 1827-1833 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Artery
T439 1841-1847 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T440 1841-1847 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T441 1854-1866 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T442 1915-1923 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T443 2374-2386 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T53 1226-1238 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T378 0-10 Sentence denotes Appendix 1
T379 11-56 Sentence denotes Medical information and correlative histology
T380 57-220 Sentence denotes Before recording tomographic scans, tissue sections of 2.5⁢μ⁢m thickness were cut from the top, stained by HE (hematoxylin and eosin) and imaged with a microscope.
T381 221-285 Sentence denotes Appendix 1—figure 1 shows the histological slice of each sample.
T382 286-393 Sentence denotes The imaged section is just above the upper plane of the 3D PC-CT reconstruction volume, but not part of it.
T383 394-414 Sentence denotes Appendix 1—figure 1.
T384 416-493 Sentence denotes Microscopic images of HE-stained histological sections of all samples (I–VI).
T385 494-615 Sentence denotes Histological slices show comparable morphologies to the virtual slices in Figure 3, which represent different z-position.
T386 616-627 Sentence denotes Scale bars:
T387 628-636 Sentence denotes 400⁢μ⁢m.
T388 637-861 Sentence denotes An overview of different morphological features identified by conventional HE histology and virtual 3D histology is presented in Appendix 1—figure 2, while Appendix 1—figure 3 presents a direct comparison for the same slice.
T389 862-938 Sentence denotes For this purpose, the sample was sectioned and stained after the PC-CT scan.
T390 939-1127 Sentence denotes Artery lumen, artery wall, erythrocytes, thrombus, alveolar septum, marcophage, hyaline membrane and black granules (anthracosis) are shown in Appendix 1—figure 2 for both imaging methods.
T391 1128-1239 Sentence denotes Contrast of the hyaline membrane is homogenous in both modalities, facilitating idetification and segmentation.
T392 1240-1392 Sentence denotes Erythrocytes are easily recognized by eye in the conventional histology image, due to the HE staining, but less well distinguished by virtual histology.
T393 1393-1553 Sentence denotes This results in a difficult differentiation between thrombus and blood stasis as well as a difficult identification of blood capillaries in the alveolar septum.
T394 1554-1710 Sentence denotes Importantly, however, feature identification can be confirmed by correlative 2d and 3D histology on the same section, as exemplified by Appendix 1—figure 3.
T395 1711-1731 Sentence denotes Appendix 1—figure 2.
T396 1733-1826 Sentence denotes Comparison of morphological features between conventional HE histology and virtual histology.
T397 1827-2091 Sentence denotes Artery lumen, artery wall, erythrocytes, thrombus, alveolar septum, macrophage, hyaline membrane and anthracotic pigments (i.e. the black granules) are presented on exemplary slices of different samples (I–VI) for conventional (left) and virtual histology (right).
T398 2092-2132 Sentence denotes Scale bars: left 200⁢μ⁢m, right 100⁢μ⁢m.
T399 2133-2153 Sentence denotes Appendix 1—figure 3.
T400 2155-2232 Sentence denotes Direct comparison of virtual and HE histology for an identical slice/section.
T401 2233-2361 Sentence denotes (top left) Region of interest of the parallel beam tomogram (Sample II). (bottom left) Corresponding HE stained histology slice.
T402 2362-2432 Sentence denotes Thrombi and erythrocytes can be identified in both imaging modalities.
T403 2433-2545 Sentence denotes The red square marks the position of the zoom tomogram, for which the corresponding slice is shown on the right.
T404 2546-2557 Sentence denotes Scale bars:
T405 2558-2565 Sentence denotes 50⁢μ⁢m.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
386 164-166 Chemical denotes HE
387 168-179 Chemical denotes hematoxylin MESH:D006416
388 184-189 Chemical denotes eosin MESH:D004801
389 345-350 CellLine denotes PC-CT CVCL:B848
391 438-440 Chemical denotes HE
396 1330-1332 Chemical denotes HE
397 980-988 Disease denotes thrombus MESH:D013927
398 1445-1453 Disease denotes thrombus MESH:D013927
399 927-932 CellLine denotes PC-CT CVCL:B848
401 1868-1876 Disease denotes thrombus MESH:D013927