PMC:7473770 / 3710-5049
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T27 | 585-589 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T28 | 683-696 | Body_part | denotes | blood vessels | http://purl.org/sig/ont/fma/fma63183 |
| T29 | 683-688 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T30 | 952-956 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T31 | 1207-1211 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T32 | 1292-1298 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T33 | 1327-1338 | Body_part | denotes | compartment | http://purl.org/sig/ont/fma/fma76577 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T22 | 683-696 | Body_part | denotes | blood vessels | http://purl.obolibrary.org/obo/UBERON_0001981 |
| T23 | 683-688 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T24 | 689-696 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T25 | 952-956 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T26 | 1292-1298 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T22 | 402-406 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T23 | 413-423 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T24 | 1178-1190 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 107-108 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 344-345 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T38 | 585-589 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T39 | 630-633 | http://purl.obolibrary.org/obo/CLO_0001755 | denotes | ask |
| T40 | 683-696 | http://purl.obolibrary.org/obo/UBERON_0001981 | denotes | blood vessels |
| T41 | 683-696 | http://www.ebi.ac.uk/efo/EFO_0000817 | denotes | blood vessels |
| T42 | 745-746 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43 | 952-956 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T44 | 952-956 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T45 | 1099-1107 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T46 | 1205-1211 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 585-600 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
| T9 | 828-856 | http://purl.obolibrary.org/obo/GO_0002041 | denotes | intussusceptive angiogenesis |
| T10 | 844-856 | http://purl.obolibrary.org/obo/GO_0001525 | denotes | angiogenesis |
| T11 | 1108-1117 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T12 | 1178-1190 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T19 | 0-204 | Sentence | denotes | In this work, we want to demonstrate the potential of propagation-based phase contrast x-ray tomography as a tool for virtual 3D histology in general, and in particular for the histopathology of Covid-19. |
| T20 | 205-424 | Sentence | denotes | Our work is based on the assertion that integration of 3D morphological information with well-established histology techniques can provide a substantial asset for unraveling the pathophysiology of SARS-Cov-2 infections. |
| T21 | 425-626 | Sentence | denotes | To this end, we have collected x-ray tomography data from the same autopsies, which were previously studied by immunohistochemical analysis and measurements of gene expression (Ackermann et al., 2020). |
| T22 | 627-736 | Sentence | denotes | We ask in particular, whether DAD and the morphology of blood vessels can be visualized and quantified in 3D. |
| T23 | 737-892 | Sentence | denotes | This is a timely scientific question in Covid-19 research, especially in view of increased intussusceptive angiogenesis reported in Ackermann et al., 2020. |
| T24 | 893-1009 | Sentence | denotes | Here we present first results obtained from the postmortem lung samples of six patients who succumbed from Covid-19. |
| T25 | 1010-1339 | Sentence | denotes | We exemplify the capability of this approach by 3D visualization of the DAD with hyaline membrane formation, by mapping the 3D distribution and density of angiocentric inflammation (perivascular T-cell infiltration), and by providing histograms of characteristic distances from the tissue interior to the closest air compartment. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T12 | 657-660 | Phenotype | denotes | DAD | http://purl.obolibrary.org/obo/HP_0033006 |
| T13 | 828-843 | Phenotype | denotes | intussusceptive | http://purl.obolibrary.org/obo/HP_0002576 |
| T14 | 1082-1085 | Phenotype | denotes | DAD | http://purl.obolibrary.org/obo/HP_0033006 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32815517-32437596-26997844 | 620-624 | 32437596 | denotes | 2020 |
| 32815517-32437596-26997845 | 887-891 | 32437596 | denotes | 2020 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32815517-32437596-26997844 | 620-624 | 32437596 | denotes | 2020 |
| 32815517-32437596-26997845 | 887-891 | 32437596 | denotes | 2020 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 98 | 972-980 | Species | denotes | patients | Tax:9606 |
| 99 | 195-203 | Disease | denotes | Covid-19 | MESH:C000657245 |
| 100 | 402-423 | Disease | denotes | SARS-Cov-2 infections | MESH:C000657245 |
| 101 | 777-785 | Disease | denotes | Covid-19 | MESH:C000657245 |
| 102 | 1000-1008 | Disease | denotes | Covid-19 | MESH:C000657245 |
| 103 | 1165-1190 | Disease | denotes | angiocentric inflammation | MESH:D007249 |