PMC:7473770 / 31965-34619
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T223 | 33-39 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T224 | 92-96 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T225 | 153-159 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T226 | 779-783 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T227 | 1114-1122 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T228 | 1507-1513 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T229 | 1734-1740 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T230 | 1846-1852 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T231 | 2425-2429 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T221 | 33-39 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T222 | 92-96 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T223 | 153-159 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T224 | 779-783 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T225 | 1507-1513 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T226 | 1734-1740 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T227 | 1846-1852 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T228 | 2425-2429 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T229 | 2471-2475 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
| T230 | 2570-2574 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T54 | 443-455 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T55 | 677-696 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T56 | 732-751 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T57 | 768-773 | Disease | denotes | tumor | http://purl.obolibrary.org/obo/MONDO_0005070 |
| T58 | 829-839 | Disease | denotes | carcinomas | http://purl.obolibrary.org/obo/MONDO_0004993 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T321 | 92-96 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T322 | 92-96 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T323 | 151-152 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T324 | 779-783 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T325 | 779-783 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T326 | 857-858 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T327 | 1246-1250 | http://purl.obolibrary.org/obo/CLO_0002983 | denotes | F 5 |
| T328 | 1309-1313 | http://purl.obolibrary.org/obo/CLO_0007437 | denotes | M 1 |
| T329 | 1341-1345 | http://purl.obolibrary.org/obo/CLO_0007437 | denotes | M 1 |
| T330 | 1421-1425 | http://purl.obolibrary.org/obo/CLO_0007437 | denotes | M 1 |
| T331 | 1605-1606 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T332 | 2054-2057 | http://purl.obolibrary.org/obo/CLO_0050154 | denotes | a 8 |
| T333 | 2064-2065 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T334 | 2153-2154 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T335 | 2226-2227 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T336 | 2298-2299 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T337 | 2355-2356 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T338 | 2425-2429 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T339 | 2425-2429 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T340 | 2471-2475 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
| T341 | 2512-2513 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T342 | 2558-2559 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T343 | 2570-2574 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T242 | 0-51 | Sentence | denotes | Autopsy, clinical background and tissue preparation |
| T243 | 52-150 | Sentence | denotes | In total we investigated six postmortem lung samples from Covid-19 patients (Menter et al., 2020). |
| T244 | 151-273 | Sentence | denotes | A tissue micro-array paraffin block with samples of all six patients and the corresponding HE stain is shown in Figure 1a. |
| T245 | 274-415 | Sentence | denotes | Information about age, gender, hospitalization, clinical, radiological and histological characteristics of all patients are shown in Table 2. |
| T246 | 416-540 | Sentence | denotes | All patients suffered from hypertension and were treated with RAAS (renin-angiotensin-aldosterone-system) interacting drugs. |
| T247 | 541-753 | Sentence | denotes | Heterogeneous ground glass and consolidation were observed in all patients clinical CT scans and the cause of death was also related to respiratory failure in each patient (patient IV cardio-respiratory failure). |
| T248 | 754-869 | Sentence | denotes | Additionally, tumor-free lung samples from partial resections of pulmonary carcinomas were analyzed as a reference. |
| T249 | 870-878 | Sentence | denotes | Table 2. |
| T250 | 880-911 | Sentence | denotes | Sample and medical information. |
| T251 | 912-1130 | Sentence | denotes | Age and gender, clinical presentation with hospitalization and treatment; NIV: non-invasive ventilation, I: immunosuppression, S: smoker, GGO: ground-glass opacification, C: consolidation, DAD: diffuse alveolar damage. |
| T252 | 1131-1141 | Sentence | denotes | Sample no. |
| T253 | 1143-1235 | Sentence | denotes | Age group, gender Hospitalization, clinical, radiological, and histological characteristics |
| T254 | 1236-1264 | Sentence | denotes | I 60–70, F 5-10d, GGO, DAD |
| T255 | 1265-1295 | Sentence | denotes | II 80–90, M 5-10d, C, I, DAD |
| T256 | 1296-1329 | Sentence | denotes | III 90–100, M 1-4d, GGO, C, DAD |
| T257 | 1330-1369 | Sentence | denotes | IV 70–80, M 1-4d, NIV, S, GGO, C, DAD |
| T258 | 1370-1409 | Sentence | denotes | V 60–70, M 5-10d, NIV, S, GGO, C, DAD |
| T259 | 1410-1444 | Sentence | denotes | VI 70–80, M 1-4d, S, GGO, C, DAD |
| T260 | 1445-1573 | Sentence | denotes | CTRL 20–30, M - From each of the six Covid-19 patients, two tissue samples with edge lengths of about 4 mm each were analyzed. |
| T261 | 1574-1702 | Sentence | denotes | To one sample of each patient, a metal containing stain (uranium acetate, UA) was applied, the other samples remained unstained. |
| T262 | 1703-1818 | Sentence | denotes | Separated for their stain, six tissue samples were dehydrated and embedded in the same multi-sample paraffin block. |
| T263 | 1819-1995 | Sentence | denotes | The size of the postmortem tissue samples made available for the study varied between the different patients (I-VI), with maximum cross-section of about 4 mm after dehydration. |
| T264 | 1996-2113 | Sentence | denotes | From all six samples, biopsy punches were taken by either a 8 mm or a 3.5 mm punch, depending on the individual size. |
| T265 | 2114-2354 | Sentence | denotes | The punches were then transferred onto a holder for the parallel-beam local tomography acquisition, followed by a further reduction in size (after measurement of the entire sample) to a 1 mm biopsy punch, for further tomographic recordings. |
| T266 | 2355-2412 | Sentence | denotes | A sketch of the sample preparation is shown in Figure 1b. |
| T267 | 2413-2654 | Sentence | denotes | The control lung sample was first mounted in an Eppendorf tube for parallel beam acquisitions, and a 1 mm biopsy punch was then transferred into a polyimide tube similar to the paraffin-embedded ones, but scanned in fixative buffer solution. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T29 | 446-458 | Phenotype | denotes | ertension an | http://purl.obolibrary.org/obo/HP_0000822 |
| T30 | 680-699 | Phenotype | denotes | piratory failure in | http://purl.obolibrary.org/obo/HP_0002878 |
| T31 | 735-754 | Phenotype | denotes | piratory failure). | http://purl.obolibrary.org/obo/HP_0002878 |
| T32 | 771-776 | Phenotype | denotes | or-fr | http://purl.obolibrary.org/obo/HP_0002664 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32815517-32364264-26997865 | 144-148 | 32364264 | denotes | 2020 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32815517-32364264-26997865 | 144-148 | 32364264 | denotes | 2020 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 270 | 119-127 | Species | denotes | patients | Tax:9606 |
| 271 | 211-219 | Species | denotes | patients | Tax:9606 |
| 272 | 385-393 | Species | denotes | patients | Tax:9606 |
| 273 | 420-428 | Species | denotes | patients | Tax:9606 |
| 274 | 607-615 | Species | denotes | patients | Tax:9606 |
| 275 | 705-712 | Species | denotes | patient | Tax:9606 |
| 276 | 714-721 | Species | denotes | patient | Tax:9606 |
| 277 | 242-244 | Chemical | denotes | HE | |
| 278 | 502-513 | Chemical | denotes | aldosterone | MESH:D000450 |
| 279 | 110-118 | Disease | denotes | Covid-19 | MESH:C000657245 |
| 280 | 443-455 | Disease | denotes | hypertension | MESH:D006973 |
| 281 | 651-656 | Disease | denotes | death | MESH:D003643 |
| 282 | 677-696 | Disease | denotes | respiratory failure | MESH:D012131 |
| 283 | 725-751 | Disease | denotes | cardio-respiratory failure | MESH:D012131 |
| 284 | 768-773 | Disease | denotes | tumor | MESH:D009369 |
| 285 | 819-839 | Disease | denotes | pulmonary carcinomas | MESH:D008175 |
| 287 | 1114-1129 | Disease | denotes | alveolar damage | MESH:D055370 |
| 298 | 1493-1501 | Species | denotes | patients | Tax:9606 |
| 299 | 1596-1603 | Species | denotes | patient | Tax:9606 |
| 300 | 1919-1927 | Species | denotes | patients | Tax:9606 |
| 301 | 1607-1612 | Chemical | denotes | metal | MESH:D008670 |
| 302 | 1631-1646 | Chemical | denotes | uranium acetate | MESH:C005460 |
| 303 | 1803-1811 | Chemical | denotes | paraffin | MESH:D010232 |
| 304 | 2560-2569 | Chemical | denotes | polyimide | |
| 305 | 2590-2598 | Chemical | denotes | paraffin | MESH:D010232 |
| 306 | 1484-1492 | Disease | denotes | Covid-19 | MESH:C000657245 |
| 307 | 1983-1994 | Disease | denotes | dehydration | MESH:D003681 |